BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0008.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_485429.1| biopolymer transport protein ExbD/TolR [Rhodops...   226   8e-58
ref|YP_571269.1| biopolymer transport protein ExbD/TolR [Rhodops...   224   3e-57
ref|NP_946469.1| putative tolR protein [Rhodopseudomonas palustr...   223   6e-57
ref|YP_004107644.1| biopolymer transport protein ExbD/TolR [Rhod...   222   2e-56
ref|YP_001990324.1| biopolymer transport protein ExbD/TolR [Rhod...   219   1e-55

>ref|YP_485429.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           HaA2]
 gb|ABD06518.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           HaA2]
          Length = 157

 Score =  226 bits (576), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 121/138 (87%)

Query: 16  RKPVMAEINVTPMVDVMLVLLIIFMVAAPLMTSNIDIDLPVASGGKSISSNQPPLTLSVK 75
           ++PVMAEINVTPMVDVMLVLLIIFMVAAPL+T++IDIDLPVA GG  I SN PPLTLSVK
Sbjct: 19  KRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGAQIQSNTPPLTLSVK 78

Query: 76  RTGGGCNSNVELYLGDAPVTAADFPAKIKAIGDARSDAEKVVYLRGDKDVCYTDMMKLLG 135
           RTGGGCNS VELY+GD+PV  A+  AKIKAI   RS+ + VVYLRGDKDVCYTDMMKLLG
Sbjct: 79  RTGGGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVVYLRGDKDVCYTDMMKLLG 138

Query: 136 EVRAAGFKANIVIIPEGG 153
           ++R AGFKANIVI+PE G
Sbjct: 139 QIRTAGFKANIVIVPEQG 156


>ref|YP_571269.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           BisB5]
 gb|ABE41368.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           BisB5]
          Length = 156

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 119/136 (87%)

Query: 18  PVMAEINVTPMVDVMLVLLIIFMVAAPLMTSNIDIDLPVASGGKSISSNQPPLTLSVKRT 77
           PVMAEINVTPMVDVMLVLLIIFMVAAPL+T++IDIDLP+A GG  I SN PPLTLSVKRT
Sbjct: 20  PVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPIARGGAQIQSNSPPLTLSVKRT 79

Query: 78  GGGCNSNVELYLGDAPVTAADFPAKIKAIGDARSDAEKVVYLRGDKDVCYTDMMKLLGEV 137
           GGGCNS VELYLGD+PV  A+  +KIKAI   RS+ + VVYLRGDKDVCYTDMMKLLG++
Sbjct: 80  GGGCNSQVELYLGDSPVAPAEMESKIKAIRTTRSETDNVVYLRGDKDVCYTDMMKLLGQI 139

Query: 138 RAAGFKANIVIIPEGG 153
           R AGFKANIVI+PE G
Sbjct: 140 RTAGFKANIVIVPEQG 155


>ref|NP_946469.1| putative tolR protein [Rhodopseudomonas palustris CGA009]
 emb|CAE26561.1| putative tolR protein, uptake of enterochelin; tonB-dependent
           uptake of B colicins [Rhodopseudomonas palustris CGA009]
          Length = 156

 Score =  223 bits (569), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 119/136 (87%)

Query: 18  PVMAEINVTPMVDVMLVLLIIFMVAAPLMTSNIDIDLPVASGGKSISSNQPPLTLSVKRT 77
           PVMAEINVTPMVDVMLVLLIIFMVAAPL+T++IDIDLPVA GG  I SN PPLTLSVKRT
Sbjct: 20  PVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGNQIQSNSPPLTLSVKRT 79

Query: 78  GGGCNSNVELYLGDAPVTAADFPAKIKAIGDARSDAEKVVYLRGDKDVCYTDMMKLLGEV 137
           GG CNS VELYLGD+P+ A++  AK+KAI + RS+ + VVYLRGDKDVCYTDMMKLLG +
Sbjct: 80  GGTCNSQVELYLGDSPIAASELEAKMKAIRETRSETDNVVYLRGDKDVCYTDMMKLLGNI 139

Query: 138 RAAGFKANIVIIPEGG 153
           R AGFKANIVI+PE G
Sbjct: 140 RTAGFKANIVIVPEQG 155


>ref|YP_004107644.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           DX-1]
 gb|ADU42911.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           DX-1]
          Length = 156

 Score =  222 bits (565), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 118/136 (86%)

Query: 18  PVMAEINVTPMVDVMLVLLIIFMVAAPLMTSNIDIDLPVASGGKSISSNQPPLTLSVKRT 77
           PVMAEINVTPMVDVMLVLLIIFMVAAPL+T++IDIDLPVA GG  I SN PPLTLSVKRT
Sbjct: 20  PVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGNQIQSNSPPLTLSVKRT 79

Query: 78  GGGCNSNVELYLGDAPVTAADFPAKIKAIGDARSDAEKVVYLRGDKDVCYTDMMKLLGEV 137
           GG CNS VELYLGD+P+ A++  AK+KAI + RS+ +  VYLRGDKDVCYTDMMKLLG +
Sbjct: 80  GGTCNSQVELYLGDSPIAASELEAKMKAIRETRSETDNTVYLRGDKDVCYTDMMKLLGNI 139

Query: 138 RAAGFKANIVIIPEGG 153
           R AGFKANIVI+PE G
Sbjct: 140 RTAGFKANIVIVPEQG 155


>ref|YP_001990324.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           TIE-1]
 gb|ACE99848.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris
           TIE-1]
          Length = 135

 Score =  219 bits (558), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 117/134 (87%)

Query: 20  MAEINVTPMVDVMLVLLIIFMVAAPLMTSNIDIDLPVASGGKSISSNQPPLTLSVKRTGG 79
           MAEINVTPMVDVMLVLLIIFMVAAPL+T++IDIDLPVA GG  I SN PPLTLSVKRTGG
Sbjct: 1   MAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGNQIQSNSPPLTLSVKRTGG 60

Query: 80  GCNSNVELYLGDAPVTAADFPAKIKAIGDARSDAEKVVYLRGDKDVCYTDMMKLLGEVRA 139
            CNS VELYLGD+P+ A++  AK+KAI + RS+ + VVYLRGDKDVCYTDMMKLLG +R 
Sbjct: 61  TCNSQVELYLGDSPIAASELEAKMKAIRETRSETDNVVYLRGDKDVCYTDMMKLLGNIRT 120

Query: 140 AGFKANIVIIPEGG 153
           AGFKANIVI+PE G
Sbjct: 121 AGFKANIVIVPEQG 134