BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0001.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769788.1| hypothetical protein bll3148 [Bradyrhizobium ja...   227   5e-58
ref|YP_001239121.1| hypothetical protein BBta_3097 [Bradyrhizobi...   219   2e-55
ref|YP_001206884.1| hypothetical protein BRADO4965 [Bradyrhizobi...   215   2e-54
ref|ZP_08631055.1| inosine-5'-monophosphate dehydrogenase [Brady...   194   4e-48
ref|YP_001416151.1| signal-transduction protein [Xanthobacter au...   134   6e-30

>ref|NP_769788.1| hypothetical protein bll3148 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48413.1| bll3148 [Bradyrhizobium japonicum USDA 110]
          Length = 142

 Score =  227 bits (578), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 120/132 (90%)

Query: 1   MQVGDILRKKTPRVATVRMNETVAIAAQLMRASNISALVVKDVVRTEGNTAVGMFTERDV 60
           M VGDILRKKTPRV TVRMNETV IAA+LMRA+NISALVVKDVVR+EGNTAVGMFTERDV
Sbjct: 1   MLVGDILRKKTPRVVTVRMNETVGIAAKLMRANNISALVVKDVVRSEGNTAVGMFTERDV 60

Query: 61  VRAIAEHGAAGAGMKVSQFVSVQQLVSCTSSDTLEHIRHLMTKHHIRHVPVIDNYSLIGV 120
           VRA+AEHGA    +KVSQ VSVQQLVSCTS DT+EH+RHLM +HHIRH+PVID+YSLI V
Sbjct: 61  VRAVAEHGANAINVKVSQLVSVQQLVSCTSIDTIEHVRHLMNRHHIRHLPVIDDYSLISV 120

Query: 121 VSMRDIAAAFDE 132
           +SMRDIAAA DE
Sbjct: 121 ISMRDIAAAVDE 132


>ref|YP_001239121.1| hypothetical protein BBta_3097 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35215.1| hypothetical protein BBta_3097 [Bradyrhizobium sp. BTAi1]
          Length = 139

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 120/135 (88%)

Query: 1   MQVGDILRKKTPRVATVRMNETVAIAAQLMRASNISALVVKDVVRTEGNTAVGMFTERDV 60
           M+VGDILR KT RV TVRMNETV +AAQLMRA N+SALVVKDVVRTEGNTA GMFTERDV
Sbjct: 1   MKVGDILRNKTARVITVRMNETVGVAAQLMRAGNVSALVVKDVVRTEGNTAAGMFTERDV 60

Query: 61  VRAIAEHGAAGAGMKVSQFVSVQQLVSCTSSDTLEHIRHLMTKHHIRHVPVIDNYSLIGV 120
           VRAIAEHGAAG  +KVSQ +S Q+L+SC+++DTLEH+RHLM  HHIRH+PVID+++L GV
Sbjct: 61  VRAIAEHGAAGVNLKVSQLISPQRLISCSTTDTLEHVRHLMNVHHIRHLPVIDDFALAGV 120

Query: 121 VSMRDIAAAFDEETA 135
           +SMRD+++AFDE  A
Sbjct: 121 ISMRDVSSAFDEAAA 135


>ref|YP_001206884.1| hypothetical protein BRADO4965 [Bradyrhizobium sp. ORS 278]
 emb|CAL78667.1| conserved hypothetical protein with CBS domain [Bradyrhizobium sp.
           ORS 278]
          Length = 139

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 121/137 (88%)

Query: 1   MQVGDILRKKTPRVATVRMNETVAIAAQLMRASNISALVVKDVVRTEGNTAVGMFTERDV 60
           M+VGDILR KT RV TVRMNETV +AAQLMRASN+SALVVKDVVRTEGNTA GMFTERDV
Sbjct: 1   MKVGDILRNKTARVITVRMNETVGVAAQLMRASNVSALVVKDVVRTEGNTAAGMFTERDV 60

Query: 61  VRAIAEHGAAGAGMKVSQFVSVQQLVSCTSSDTLEHIRHLMTKHHIRHVPVIDNYSLIGV 120
           VRAIAEHGAAG  M+VSQ +S Q+L+SC++ D+LEH+RHLM  HHIRH+PVI +++L GV
Sbjct: 61  VRAIAEHGAAGVTMRVSQLISPQRLISCSTEDSLEHVRHLMNVHHIRHLPVIVDFALAGV 120

Query: 121 VSMRDIAAAFDEETAAS 137
           +SMRD+++AFDE  A++
Sbjct: 121 ISMRDVSSAFDEAEASA 137


>ref|ZP_08631055.1| inosine-5'-monophosphate dehydrogenase [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP06156.1| inosine-5'-monophosphate dehydrogenase [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 148

 Score =  194 bits (492), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 111/129 (86%)

Query: 1   MQVGDILRKKTPRVATVRMNETVAIAAQLMRASNISALVVKDVVRTEGNTAVGMFTERDV 60
           M+VGDIL +K  R+ATVRMNETVA AA+L+R  NISALVVKDV RTEGN AVGMFTERDV
Sbjct: 1   MRVGDILNRKNTRIATVRMNETVATAARLLRDENISALVVKDVCRTEGNVAVGMFTERDV 60

Query: 61  VRAIAEHGAAGAGMKVSQFVSVQQLVSCTSSDTLEHIRHLMTKHHIRHVPVIDNYSLIGV 120
           VRA+AEHGAAG  MKVS  +SVQ+LVSC S+D L+++R LM  HHIRH+PVID+++L+GV
Sbjct: 61  VRAVAEHGAAGLSMKVSALISVQKLVSCHSTDLLDYVRELMNDHHIRHLPVIDDHTLVGV 120

Query: 121 VSMRDIAAA 129
           +SMRDI A+
Sbjct: 121 ISMRDINAS 129


>ref|YP_001416151.1| signal-transduction protein [Xanthobacter autotrophicus Py2]
 gb|ABS66494.1| putative signal-transduction protein with CBS domains [Xanthobacter
           autotrophicus Py2]
          Length = 155

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 104/145 (71%), Gaps = 2/145 (1%)

Query: 1   MQVGDILR-KKTPRVATVRMNETVAIAAQLMRASNISALVVKDVVRTEGNTAVGMFTERD 59
           M V D+LR K+  R+ T+RM+ETVA A  +M+  NIS+++VKDV RTEGNT VG+F+ERD
Sbjct: 2   MTVDDMLRAKRDTRIITLRMHETVADAVLVMKRENISSVIVKDVCRTEGNTVVGVFSERD 61

Query: 60  VVRAIAEHGAAGAGMKVSQFVSVQQLVSCTSSDTLEHIRHLMTKHHIRHVPVIDNYSLIG 119
           V RA+ EHGA    M ++  +  ++++SC+ +D++E +  LM +H +RH+PVI+N+SL+G
Sbjct: 62  VTRAVLEHGANTPKMVLASLLK-REVISCSLADSIETVLRLMVEHQVRHLPVIENHSLVG 120

Query: 120 VVSMRDIAAAFDEETAASKKDAVPA 144
           V+S  D+   + +E  A+ ++ V A
Sbjct: 121 VISATDLMRHYLKEEEAALREPVTA 145