BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0012.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773918.1| two-component response regulator [Bradyrhizobiu... 429 e-118 ref|YP_004866516.1| response regulator [Micavibrio aeruginosavor... 255 4e-66 ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 239... 252 2e-65 ref|ZP_08422374.1| two component transcriptional regulator, wing... 252 3e-65 ref|ZP_01895829.1| Response regulator consisting of a CheY-like ... 252 3e-65 >ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 230 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/230 (92%), Positives = 222/230 (96%) Query: 1 MTGAHRRILVVEDDPETAGQLVEELTTSGYDVDLAANGREALSQGAARDYAVITIDRMLP 60 MTG HRRILVVEDDPETAGQLVEELTTSGY+VDLAA GREALS GAARDYAVITIDRMLP Sbjct: 1 MTGGHRRILVVEDDPETAGQLVEELTTSGYEVDLAATGREALSHGAARDYAVITIDRMLP 60 Query: 61 DIDGITVMRQMRDGGIAVPFLIISALGEIDDRVRGLRAGGDDYLVKPFSFVELLARLEAL 120 DIDGITVMRQ+RD GIA PFLIISALGE+DDRVRGLRAGGDDYLVKPFSFVELLARLEAL Sbjct: 61 DIDGITVMRQLRDDGIAAPFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEAL 120 Query: 121 GRRSETVAKETILRVGDLAIDLISRTASRRGRKIPLLPKEFQLLEYLARNEGRVVSRAML 180 GRRSET+AKET+LRVGDLAIDLI+R ASRRGRKIPLLP+EFQLLEYL RNEGRVVSRAML Sbjct: 121 GRRSETIAKETLLRVGDLAIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAML 180 Query: 181 LRHVWDLHFDPSTNIIDVYVGRLRRKVDDQQAYPLIHTIRGIGYCLRAPG 230 L+HVWDLHFDPSTNIIDVYVGR+RRKVDD QAYPLIHTIRGIGYCLRAPG Sbjct: 181 LQHVWDLHFDPSTNIIDVYVGRVRRKVDDAQAYPLIHTIRGIGYCLRAPG 230 >ref|YP_004866516.1| response regulator [Micavibrio aeruginosavorus ARL-13] gb|AEP10514.1| response regulator [Micavibrio aeruginosavorus ARL-13] Length = 226 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/223 (54%), Positives = 164/223 (73%), Gaps = 2/223 (0%) Query: 7 RILVVEDDPETAGQLVEELTTSGYDVDLAANGREALSQGAARDYAVITIDRMLPDIDGIT 66 RIL++ED+PE L + + +G+ D A+G+E L +Y V+ +DRMLP++DG+T Sbjct: 2 RILIIEDEPEVLSYLAKGMREAGHTADTTASGKEGLFLATTENYDVLIVDRMLPELDGLT 61 Query: 67 VMRQMRDGGIAVPFLIISALGEIDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126 V++ +R G P LI+SALGE+DDRV+GLR+GGDDYLVKPF+F ELLAR+E L RR+ Sbjct: 62 VIKTIRGAGNTTPALILSALGEVDDRVKGLRSGGDDYLVKPFAFAELLARVEILARRTGN 121 Query: 127 VAK--ETILRVGDLAIDLISRTASRRGRKIPLLPKEFQLLEYLARNEGRVVSRAMLLRHV 184 A+ ETIL GDL ++L+SR +R R I L +EF+LLEYL R++G+VV+R MLL HV Sbjct: 122 GAQTAETILAAGDLTLNLLSRKITRGSRDIDLQAREFKLLEYLLRHKGQVVTRTMLLEHV 181 Query: 185 WDLHFDPSTNIIDVYVGRLRRKVDDQQAYPLIHTIRGIGYCLR 227 WD HFDP TN+IDV++ RLRRK+D+ PLIHT+RG GY +R Sbjct: 182 WDYHFDPQTNVIDVHISRLRRKIDENAKNPLIHTVRGAGYMIR 224 >ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/222 (55%), Positives = 158/222 (71%), Gaps = 1/222 (0%) Query: 7 RILVVEDDPETAGQLVEELTTSGYDVDLAANGREALSQGAARDYAVITIDRMLPDIDGIT 66 R+LV+EDD + A L + L SGY VD NG+ L Y ++ +DRMLP++DG++ Sbjct: 2 RVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGLS 61 Query: 67 VMRQMRDGGIAVPFLIISALGEIDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126 V+R +R GG P L++SALGE+DDRV+GLRAGGDDYLVKPFSF ELLAR+EAL RRS+ Sbjct: 62 VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQQ 121 Query: 127 VAK-ETILRVGDLAIDLISRTASRRGRKIPLLPKEFQLLEYLARNEGRVVSRAMLLRHVW 185 T L+V DL +DL++RT R G I L P+EF+LLEY RN G+V++R MLL VW Sbjct: 122 QQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKVW 181 Query: 186 DLHFDPSTNIIDVYVGRLRRKVDDQQAYPLIHTIRGIGYCLR 227 D HFDP TN+IDV++ RLR K+D PL+HTIRG GY LR Sbjct: 182 DYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLR 223 >ref|ZP_08422374.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gb|EGJ49479.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/221 (55%), Positives = 162/221 (73%) Query: 7 RILVVEDDPETAGQLVEELTTSGYDVDLAANGREALSQGAARDYAVITIDRMLPDIDGIT 66 RILV+EDD E A +++ L SG+ V+ AA+G++ L AA Y + +DRMLP +DG+T Sbjct: 2 RILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRMLPGVDGLT 61 Query: 67 VMRQMRDGGIAVPFLIISALGEIDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126 +++ +R G A P L +SA+GE+DDRVRGL+AGGDDYL KP++F ELLARLEAL RR+ Sbjct: 62 IVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAGA 121 Query: 127 VAKETILRVGDLAIDLISRTASRRGRKIPLLPKEFQLLEYLARNEGRVVSRAMLLRHVWD 186 V T+L+V DL +DL+ R+ R GR I L PKEF LLEYL R+ G+VV+R MLL +VWD Sbjct: 122 VTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENVWD 181 Query: 187 LHFDPSTNIIDVYVGRLRRKVDDQQAYPLIHTIRGIGYCLR 227 FDP TN+IDV++ RLR+K+D PL+HT+RG GY LR Sbjct: 182 YSFDPQTNVIDVHISRLRQKIDKDFDRPLLHTVRGSGYSLR 222 >ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 226 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 163/222 (73%), Gaps = 1/222 (0%) Query: 7 RILVVEDDPETAGQLVEELTTSGYDVDLAANGREALSQGAARDYAVITIDRMLPDIDGIT 66 + LV+EDD + A LV+ L S + VD AA+G+E + A+ DY ++ +DRMLP +DG++ Sbjct: 2 KALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGLS 61 Query: 67 VMRQMRDGGIAVPFLIISALGEIDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126 +++ +R G VP LI+SALG++DDRV GLR GGDDYL KPFSF ELLAR+E+L RR+ Sbjct: 62 IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121 Query: 127 VAK-ETILRVGDLAIDLISRTASRRGRKIPLLPKEFQLLEYLARNEGRVVSRAMLLRHVW 185 A+ ET+LRV DL +DL++RT R G I + P+EF+LLEYL RN G+VV+R MLL VW Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181 Query: 186 DLHFDPSTNIIDVYVGRLRRKVDDQQAYPLIHTIRGIGYCLR 227 D HFDP TN+IDV++ RLR K+D + PL+ TIRG GY LR Sbjct: 182 DYHFDPQTNVIDVHISRLRAKIDKEFETPLLQTIRGAGYMLR 223