BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0004.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770012.1| hypothetical protein bll3372 [Bradyrhizobium ja... 210 7e-53 ref|YP_001206715.1| hypothetical protein BRADO4772 [Bradyrhizobi... 165 3e-39 ref|YP_001240736.1| hypothetical protein BBta_4806 [Bradyrhizobi... 163 1e-38 ref|ZP_07375928.1| VWA containing CoxE family protein [Ahrensia ... 103 1e-20 ref|YP_004611961.1| VWA containing CoxE family protein [Mesorhiz... 97 1e-18 >ref|NP_770012.1| hypothetical protein bll3372 [Bradyrhizobium japonicum USDA 110] dbj|BAC48637.1| bll3372 [Bradyrhizobium japonicum USDA 110] Length = 375 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 107/144 (74%), Positives = 128/144 (88%), Gaps = 1/144 (0%) Query: 1 VSDDLQLPRAARIFVSFVALLRANGFAVAPEQTTSFLAAIELLGPRSLEHVRLAGLATLA 60 +S +LQLP+AAR+FVSFVALLRANGFAVAPEQTT+FL AIELLGPR L +R A LATLA Sbjct: 1 MSPELQLPQAARVFVSFVALLRANGFAVAPEQTTAFLTAIELLGPRHLGDIRQAALATLA 60 Query: 61 PPPERRATYDRLFDIHFRGAEAIEQ-AEGEDEETVRLQEEGRGEDEPPLADEANESGLAA 119 PPPERRAT+DRLFD+HFRG+EA+ + +GED+ETVRLQEEGRG++EP L+D+ANESGLAA Sbjct: 61 PPPERRATFDRLFDLHFRGSEAVTRDDDGEDDETVRLQEEGRGDEEPLLSDDANESGLAA 120 Query: 120 ARAEALVERRFAQAATSDPLRKLS 143 R+EALVERRFAQ + D LR+L+ Sbjct: 121 TRSEALVERRFAQLSPGDALRRLT 144 >ref|YP_001206715.1| hypothetical protein BRADO4772 [Bradyrhizobium sp. ORS 278] emb|CAL78498.1| conserved hypothetical protein with VWA domain containing CoxE-like protein; COG3552 Protein containing von Willebrand factor type A (vWA) domain [Bradyrhizobium sp. ORS 278] Length = 372 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/151 (60%), Positives = 115/151 (76%), Gaps = 3/151 (1%) Query: 4 DLQLPRAARIFVSFVALLRANGFAVAPEQTTSFLAAIELLGPRSLEHVRLAGLATLAPPP 63 +L+LP+ A IFV+F ALLR NGFAVAPEQTT+FLAAIELLGP SL+ +R AG A LAPPP Sbjct: 3 ELRLPQPAEIFVTFAALLRRNGFAVAPEQTTAFLAAIELLGPTSLDDIRRAGAAMLAPPP 62 Query: 64 ERRATYDRLFDIHFRGAE--AIEQAEGEDEETVRLQEEGRGEDEPPLADEANESGLAAAR 121 ER ATY+ LFDIHF +E A+ +++ +D + VRLQEEG G +P LA E NESG+AA R Sbjct: 63 ERLATYNLLFDIHFGVSEPSALGESDQQD-DVVRLQEEGEGAVDPDLAQEQNESGMAATR 121 Query: 122 AEALVERRFAQAATSDPLRKLSREAARRLPR 152 AEALV RR A + L++L+R+A +LP+ Sbjct: 122 AEALVARRLGVATGRNALQQLARQARAKLPK 152 >ref|YP_001240736.1| hypothetical protein BBta_4806 [Bradyrhizobium sp. BTAi1] gb|ABQ36830.1| hypothetical protein BBta_4806 [Bradyrhizobium sp. BTAi1] Length = 372 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/148 (60%), Positives = 109/148 (73%), Gaps = 1/148 (0%) Query: 6 QLPRAARIFVSFVALLRANGFAVAPEQTTSFLAAIELLGPRSLEHVRLAGLATLAPPPER 65 +LP A IF+SF ALLR NGFA+APEQTTSFL AI LLGP SL+ +R AG ATLAPPPER Sbjct: 5 RLPNAVVIFISFAALLRRNGFAIAPEQTTSFLEAIALLGPTSLDDIRRAGAATLAPPPER 64 Query: 66 RATYDRLFDIHFRGAEAIEQAEGED-EETVRLQEEGRGEDEPPLADEANESGLAAARAEA 124 RATY+ LFDIHF EA +E + ++ VRLQEEG G + LA+E NESGLAA RAEA Sbjct: 65 RATYNLLFDIHFGVTEAAALSESDQRDDIVRLQEEGDGAVDRDLAEEQNESGLAATRAEA 124 Query: 125 LVERRFAQAATSDPLRKLSREAARRLPR 152 LV RR A + + L++L+R+A LP+ Sbjct: 125 LVARRLAGSTGGNALQRLARQARATLPK 152 >ref|ZP_07375928.1| VWA containing CoxE family protein [Ahrensia sp. R2A130] gb|EFL87822.1| VWA containing CoxE family protein [Ahrensia sp. R2A130] Length = 393 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 3/173 (1%) Query: 7 LPRAARIFVSFVALLRANGFAVAPEQTTSFLAAIELLGPRSLEHVRLAGLATLAPPPERR 66 +P+A R FV F +LR NGFA+APEQTT F+ A+ LLGPR + + AG+A LA P R Sbjct: 16 MPKATRAFVDFAHVLRNNGFAIAPEQTTGFIEAVGLLGPRDINDIHKAGIAMLAIPRARW 75 Query: 67 ATYDRLFDIHFRGAEAIEQAEGEDEETVRLQEEGRGEDEPPLADEANESGLAAARAEALV 126 + YD LF F A G+DE+ ++ + + + + E G A+R+EAL Sbjct: 76 SIYDALFRAFFLDQAISAPATGDDEDEMQALDPRDTSRDVEVDSDDTEVGAEASRSEALS 135 Query: 127 ERRFAQAATSDPLRKLSREAARRLPRRA---RPPAPSRTEWPVRRSAPHATRQ 176 +R F +++ LR +R A + LPRR R PA +RR+ A R+ Sbjct: 136 QREFVGFDSAEVLRHFTRNAPKLLPRRLSYRRRPANRGDRLDMRRALREAVRR 188 >ref|YP_004611961.1| VWA containing CoxE family protein [Mesorhizobium opportunistum WSM2075] gb|AEH87867.1| VWA containing CoxE family protein [Mesorhizobium opportunistum WSM2075] Length = 378 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 3/125 (2%) Query: 7 LPRAARIFVSFVALLRANGFAVAPEQTTSFLAAIELLGPRSLEHVRLAGLATLAPPPERR 66 LPRAA F LLR GFA+APEQ +SF+ A+ LLGPRS+ +R A LATLAPPP+RR Sbjct: 7 LPRAAVPLFGFARLLRRYGFAIAPEQVSSFMQAVTLLGPRSMADIREAALATLAPPPDRR 66 Query: 67 ATYDRLFDIHFRG-AEAIEQAEGEDEETVRLQEEGRGEDEPPLADEANESGLAAARAEAL 125 ++ F HF G A A+ +A+ DEET R++++G +DE A++ E G ++ E L Sbjct: 67 DEFEAHFQSHFYGNASAVVEADA-DEET-RIKDDGGADDERIEAEQQQEVGELSSALEQL 124 Query: 126 VERRF 130 R F Sbjct: 125 SMRDF 129