BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0262.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769080.1| ABC transporter permease protein [Bradyrhizobiu... 526 e-147 ref|YP_571185.1| binding-protein-dependent transport systems inn... 504 e-141 ref|YP_487815.1| binding-protein-dependent transport systems inn... 503 e-141 ref|NP_949742.1| binding-protein-dependent transport systems inn... 502 e-140 ref|YP_001238310.1| putative sugar ABC transport system, permeas... 501 e-140 >ref|NP_769080.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47705.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 268 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/268 (97%), Positives = 264/268 (98%) Query: 1 MHSIPGRRLIMALFLIFLLLPIYWLVNMSFKTNAEIVSTMTLWPHTPTLQHYKRIFTDES 60 MHSIPGRRLIM LFL+FLLLPIYWLVNMSFKTN+EIVSTMTLWPH PTLQHY+RIFTDES Sbjct: 1 MHSIPGRRLIMGLFLVFLLLPIYWLVNMSFKTNSEIVSTMTLWPHAPTLQHYRRIFTDES 60 Query: 61 WYSGYINSLEYVVLNTIISIAVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 WYSGYINSLEYVVLNTIISI+VALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF Sbjct: 61 WYSGYINSLEYVVLNTIISISVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 Query: 121 FNLYSAIDLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 FNLYSAI LFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK Sbjct: 121 FNLYSAIGLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 Query: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQAKPIAAIMTRTVSAAGMDWGLLAAA 240 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQ KPIAAIMTRTVSAAGMDWGLLAAA Sbjct: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQTKPIAAIMTRTVSAAGMDWGLLAAA 240 Query: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 GVLTIIPGALVIWFVRNYIARGFALGRV Sbjct: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 >ref|YP_571185.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE41284.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 268 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/268 (90%), Positives = 262/268 (97%) Query: 1 MHSIPGRRLIMALFLIFLLLPIYWLVNMSFKTNAEIVSTMTLWPHTPTLQHYKRIFTDES 60 MHSIPGRR++MAL+L+FL+LPIYWLVNMSFKTN EIV+TMTLWPH PTL++Y+ IFTD S Sbjct: 1 MHSIPGRRIVMALYLLFLMLPIYWLVNMSFKTNGEIVTTMTLWPHQPTLENYRTIFTDPS 60 Query: 61 WYSGYINSLEYVVLNTIISIAVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 WYSGYINSL+YVV+NT++SI+ ALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF Sbjct: 61 WYSGYINSLQYVVINTVLSISFALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 Query: 121 FNLYSAIDLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 FNLYSAI+LFDTPWAVALAHC+FNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFF+K Sbjct: 121 FNLYSAINLFDTPWAVALAHCLFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFVK 180 Query: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQAKPIAAIMTRTVSAAGMDWGLLAAA 240 IL+PLIASGIGVAAFFCFMFSWVELLLARTLTSV AKPI+A+MTRTVSAAGMDWGLLAAA Sbjct: 181 ILMPLIASGIGVAAFFCFMFSWVELLLARTLTSVNAKPISAVMTRTVSAAGMDWGLLAAA 240 Query: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 GVLTIIPGALVIWFVRNYIARGFALGRV Sbjct: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 >ref|YP_487815.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] gb|ABD08904.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 268 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/268 (90%), Positives = 261/268 (97%) Query: 1 MHSIPGRRLIMALFLIFLLLPIYWLVNMSFKTNAEIVSTMTLWPHTPTLQHYKRIFTDES 60 MHSIPGRR++MA +LIFL+LPIYWLVNMSFKTN EIVSTMTLWPH PTL++Y+ IFTD S Sbjct: 1 MHSIPGRRIVMACYLIFLMLPIYWLVNMSFKTNGEIVSTMTLWPHQPTLENYRTIFTDPS 60 Query: 61 WYSGYINSLEYVVLNTIISIAVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 WYSGYINSL+YVV+NT++SI+ ALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF Sbjct: 61 WYSGYINSLQYVVINTVLSISFALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 Query: 121 FNLYSAIDLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 FNLYSAI+LFDTPWAVALAHC+FNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFF+K Sbjct: 121 FNLYSAINLFDTPWAVALAHCLFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFVK 180 Query: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQAKPIAAIMTRTVSAAGMDWGLLAAA 240 IL+PLIASGIGVAAFFCFMFSWVELLLARTLTSV AKPI+A+MTRTVSAAGMDWGLLAAA Sbjct: 181 ILMPLIASGIGVAAFFCFMFSWVELLLARTLTSVNAKPISAVMTRTVSAAGMDWGLLAAA 240 Query: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 GVLTIIPGALVIWFVRNYIARGFALGRV Sbjct: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 >ref|NP_949742.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris CGA009] ref|YP_001993855.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] ref|YP_004110905.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] emb|CAE29847.1| sugar ABC transport system, permease component [Rhodopseudomonas palustris CGA009] gb|ACF03380.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] gb|ADU46172.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 268 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/268 (89%), Positives = 262/268 (97%) Query: 1 MHSIPGRRLIMALFLIFLLLPIYWLVNMSFKTNAEIVSTMTLWPHTPTLQHYKRIFTDES 60 MHSIPGRR++MAL+L+FL+LPIYWLVNMSFKTN EIVSTMTLWPH PTL++Y+ IFTD S Sbjct: 1 MHSIPGRRIVMALYLLFLMLPIYWLVNMSFKTNGEIVSTMTLWPHQPTLENYRTIFTDPS 60 Query: 61 WYSGYINSLEYVVLNTIISIAVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 WYSGYINSL+YVV+NT++SI+ ALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF Sbjct: 61 WYSGYINSLQYVVINTVLSISFALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 Query: 121 FNLYSAIDLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 FNLYSA++LFDTPWAVALAHC+FNVPLAVWILEGFVSGVP+EIDETAFLDGYSFPRFF+K Sbjct: 121 FNLYSALNLFDTPWAVALAHCLFNVPLAVWILEGFVSGVPKEIDETAFLDGYSFPRFFVK 180 Query: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQAKPIAAIMTRTVSAAGMDWGLLAAA 240 IL+PLIASGIGVAAFFCFMFSWVELLLARTLTSV AKPI+A+MTRTVSAAGMDWGLLAAA Sbjct: 181 ILMPLIASGIGVAAFFCFMFSWVELLLARTLTSVNAKPISAVMTRTVSAAGMDWGLLAAA 240 Query: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 GVLTIIPGALVIWFVRNYIARGFALGRV Sbjct: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 >ref|YP_001238310.1| putative sugar ABC transport system, permease component [Bradyrhizobium sp. BTAi1] gb|ABQ34404.1| carbohydrate ABC transporter membrane protein 2, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 268 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/268 (91%), Positives = 260/268 (97%) Query: 1 MHSIPGRRLIMALFLIFLLLPIYWLVNMSFKTNAEIVSTMTLWPHTPTLQHYKRIFTDES 60 M++IPGRR+IMA+FL+FLLLPIYWLVNMSFKTN EIV+TMTLWPH PT+ +Y RIFTDES Sbjct: 1 MNTIPGRRVIMAVFLVFLLLPIYWLVNMSFKTNNEIVTTMTLWPHQPTIANYMRIFTDES 60 Query: 61 WYSGYINSLEYVVLNTIISIAVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 WYSGYINSL+YV+LNT+ISI VALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF Sbjct: 61 WYSGYINSLKYVILNTVISILVALPAAYAFSRYRFLGDKHLFFWLLSNRMAPAAVYALPF 120 Query: 121 FNLYSAIDLFDTPWAVALAHCIFNVPLAVWILEGFVSGVPREIDETAFLDGYSFPRFFIK 180 FNLYSAI LFDTPWAVALAHCIFN+PLAVWILEGFVS VPREIDETAFLDGYSFPRFF+K Sbjct: 121 FNLYSAIGLFDTPWAVALAHCIFNIPLAVWILEGFVSSVPREIDETAFLDGYSFPRFFVK 180 Query: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVQAKPIAAIMTRTVSAAGMDWGLLAAA 240 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSV AKPI+A+MTRTVSA+GMDWGLLAAA Sbjct: 181 ILVPLIASGIGVAAFFCFMFSWVELLLARTLTSVDAKPISAVMTRTVSASGMDWGLLAAA 240 Query: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268 GVLTIIPGALVIWFVRNYIARGFALGRV Sbjct: 241 GVLTIIPGALVIWFVRNYIARGFALGRV 268