BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0261.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769079.1| ABC transporter permease protein [Bradyrhizobiu... 560 e-157 ref|YP_001238309.1| putative ABC transporter permease [Bradyrhiz... 545 e-153 ref|NP_949743.1| binding-protein-dependent transport systems inn... 544 e-153 ref|YP_571186.1| binding-protein-dependent transport systems inn... 543 e-153 ref|YP_001993856.1| ABC transporter inner membrane protein [Rhod... 542 e-152 >ref|NP_769079.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47704.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 324 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 283/303 (93%), Positives = 289/303 (95%), Gaps = 4/303 (1%) Query: 1 MDKTV-XKAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 59 MDKT+ KAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS Sbjct: 1 MDKTINQKAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 60 Query: 60 TDLGGRFLASLGRNLFFSAVILAIEVPLGIIVALSMPREGWGVAACLVILALPLLIPWNV 119 TDLGGRFLASLGRNLFFS VILAIEVPLGI+VALSMPR+GW VAACLVILALPLLIPWNV Sbjct: 61 TDLGGRFLASLGRNLFFSLVILAIEVPLGIVVALSMPRDGWTVAACLVILALPLLIPWNV 120 Query: 120 VGTIWQIFGRPDIGLLGYVLNHLGLNYNYVSNEVDAWVTVIVMDVWHWTSLVALLCYAGL 179 VGTIWQIFGRPDIGLLGY LN +GL+YNYVSN VDAWVTVIVMDVWHWTSLVALLCYAGL Sbjct: 121 VGTIWQIFGRPDIGLLGYTLNAMGLDYNYVSNAVDAWVTVIVMDVWHWTSLVALLCYAGL 180 Query: 180 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 239 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP Sbjct: 181 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 240 Query: 240 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTVMVNAGSERPA---KE 296 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCW+FYTVM NAG ER A KE Sbjct: 241 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWIFYTVMTNAGVERKAQAEKE 300 Query: 297 GAA 299 AA Sbjct: 301 PAA 303 >ref|YP_001238309.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34403.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 300 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/300 (89%), Positives = 283/300 (94%), Gaps = 1/300 (0%) Query: 1 MDKTVX-KAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 59 MDKT+ KAWFLVLPVFL+VAFSA+LPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS Sbjct: 1 MDKTINNKAWFLVLPVFLLVAFSAILPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 60 Query: 60 TDLGGRFLASLGRNLFFSAVILAIEVPLGIIVALSMPREGWGVAACLVILALPLLIPWNV 119 TDLGGRFLASLGRNL FS ILAIEVPLGI+VALSMPR+GW VA CLV+LALPLLIPWNV Sbjct: 61 TDLGGRFLASLGRNLIFSLAILAIEVPLGIVVALSMPRDGWTVAFCLVVLALPLLIPWNV 120 Query: 120 VGTIWQIFGRPDIGLLGYVLNHLGLNYNYVSNEVDAWVTVIVMDVWHWTSLVALLCYAGL 179 VGTIWQIFGRPDIGLLGY L +G++YNYVSN++DAW TVIVMDVWHWTSLVALLCYAGL Sbjct: 121 VGTIWQIFGRPDIGLLGYTLTSMGIDYNYVSNDLDAWATVIVMDVWHWTSLVALLCYAGL 180 Query: 180 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 239 KSIPDAYYQAAQIDGASRWAVF AIQLPKM+RVLLIAVLLRFMDSFMIYTEPFVVTGGGP Sbjct: 181 KSIPDAYYQAAQIDGASRWAVFTAIQLPKMHRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 240 Query: 240 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTVMVNAGSERPAKEGAA 299 GNSTTF+SIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYT+M NAG+ER EG A Sbjct: 241 GNSTTFISIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTIMTNAGAERRPAEGGA 300 >ref|NP_949743.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris CGA009] emb|CAE29848.1| permease protein of sugar ABC transporter [Rhodopseudomonas palustris CGA009] Length = 300 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/299 (88%), Positives = 281/299 (93%), Gaps = 1/299 (0%) Query: 1 MDKTV-XKAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 59 MDK V KAWFLVLPVF +VAFSA+LPLMTVVNYS+QDTFGNNQFFWNGVGWFKELLDPS Sbjct: 1 MDKVVNQKAWFLVLPVFAIVAFSAILPLMTVVNYSVQDTFGNNQFFWNGVGWFKELLDPS 60 Query: 60 TDLGGRFLASLGRNLFFSAVILAIEVPLGIIVALSMPREGWGVAACLVILALPLLIPWNV 119 +DLGGRF ASLGRNL FS +ILAIEVPLGI+VAL+MPR GW VA CLVI+ALPLLIPWNV Sbjct: 61 SDLGGRFFASLGRNLAFSMIILAIEVPLGIVVALAMPRHGWSVAFCLVIMALPLLIPWNV 120 Query: 120 VGTIWQIFGRPDIGLLGYVLNHLGLNYNYVSNEVDAWVTVIVMDVWHWTSLVALLCYAGL 179 VGTIWQIFGRPDIGL+GY LNHLG NYNYVSNE DAW TV+VMDVWHWTSLVALLCYAGL Sbjct: 121 VGTIWQIFGRPDIGLMGYTLNHLGFNYNYVSNEFDAWATVVVMDVWHWTSLVALLCYAGL 180 Query: 180 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 239 KSIPDAYYQAAQIDGASRWAVFKAIQLPKM+RVLLIAVLLRFMDSFMIYTEPFVVTGGGP Sbjct: 181 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMHRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 240 Query: 240 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTVMVNAGSERPAKEGA 298 GNSTTF+SIELVKIALGQFDLGKAAALS+VYNLII+IVCWVFYTVM NAG+ER EG+ Sbjct: 241 GNSTTFISIELVKIALGQFDLGKAAALSIVYNLIIIIVCWVFYTVMTNAGNERRQAEGS 299 >ref|YP_571186.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE41285.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 300 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 267/300 (89%), Positives = 282/300 (94%), Gaps = 1/300 (0%) Query: 1 MDKTV-XKAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 59 M+K V KAWFLVLPVF +VAFSA+LPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS Sbjct: 1 MEKIVNQKAWFLVLPVFAIVAFSAILPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 60 Query: 60 TDLGGRFLASLGRNLFFSAVILAIEVPLGIIVALSMPREGWGVAACLVILALPLLIPWNV 119 TDLGGRF ASL RNL FSA+ILAIEVPLGI+VAL+MPR GW VAACLVI+ALPLLIPWNV Sbjct: 61 TDLGGRFFASLWRNLAFSAIILAIEVPLGIVVALAMPRHGWSVAACLVIMALPLLIPWNV 120 Query: 120 VGTIWQIFGRPDIGLLGYVLNHLGLNYNYVSNEVDAWVTVIVMDVWHWTSLVALLCYAGL 179 VGTIWQIFGRPDIGLLGY LN LG+NYNYVSNE DAW TV+VMDVWHWTSLVALLCYAGL Sbjct: 121 VGTIWQIFGRPDIGLLGYTLNSLGINYNYVSNEFDAWATVVVMDVWHWTSLVALLCYAGL 180 Query: 180 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 239 KSIPDAYYQAAQIDGASRWAVFKAIQLPKM+RVLLIAVLLRFMDSFMIYTEPFVVTGGGP Sbjct: 181 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMHRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 240 Query: 240 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTVMVNAGSERPAKEGAA 299 GNSTTF+SIELVKIALGQFDLGKAAALS+VYNLII+IVCWVFYTVM NAG+ER G+A Sbjct: 241 GNSTTFISIELVKIALGQFDLGKAAALSIVYNLIIIIVCWVFYTVMTNAGAERQQTPGSA 300 >ref|YP_001993856.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] gb|ACF03381.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 300 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/299 (88%), Positives = 281/299 (93%), Gaps = 1/299 (0%) Query: 1 MDKTV-XKAWFLVLPVFLVVAFSAVLPLMTVVNYSMQDTFGNNQFFWNGVGWFKELLDPS 59 MDK V KAWFLVLPVF +VAFSA+LPLMTVVNYS+QDTFGNNQFFWNGVGWFKELLDPS Sbjct: 1 MDKVVNQKAWFLVLPVFAIVAFSAILPLMTVVNYSVQDTFGNNQFFWNGVGWFKELLDPS 60 Query: 60 TDLGGRFLASLGRNLFFSAVILAIEVPLGIIVALSMPREGWGVAACLVILALPLLIPWNV 119 TDLGGRF ASL RNL FSA+ILAIEVPLGI+VAL+MPR GW VA CLVI+ALPLLIPWNV Sbjct: 61 TDLGGRFFASLWRNLAFSAIILAIEVPLGIVVALAMPRHGWSVAFCLVIMALPLLIPWNV 120 Query: 120 VGTIWQIFGRPDIGLLGYVLNHLGLNYNYVSNEVDAWVTVIVMDVWHWTSLVALLCYAGL 179 VGTIWQIFGRPDIGL+GY LNHLG NYNYVSN+ DAW TV+VMDVWHWTSLVALLCYAGL Sbjct: 121 VGTIWQIFGRPDIGLMGYTLNHLGFNYNYVSNDFDAWATVVVMDVWHWTSLVALLCYAGL 180 Query: 180 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMNRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 239 KSIPDAYYQAAQIDGASRWAVFKAIQLPKM+RVLLIAVLLRFMDSFMIYTEPFVVTGGGP Sbjct: 181 KSIPDAYYQAAQIDGASRWAVFKAIQLPKMHRVLLIAVLLRFMDSFMIYTEPFVVTGGGP 240 Query: 240 GNSTTFVSIELVKIALGQFDLGKAAALSLVYNLIILIVCWVFYTVMVNAGSERPAKEGA 298 GNSTTF+SIELVKIALGQFDLGKAAALS+VYNLII+IVCWVFYTVM NAG+ER EG+ Sbjct: 241 GNSTTFISIELVKIALGQFDLGKAAALSIVYNLIIIIVCWVFYTVMTNAGNERRQAEGS 299