BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0257.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769073.1| transcriptional regulator [Bradyrhizobium japon... 478 e-133 ref|YP_487820.1| DeoR family transcriptional regulator [Rhodopse... 455 e-126 ref|YP_001238305.1| DeoR family transcriptional regulator [Brady... 454 e-126 ref|YP_531241.1| DeoR family transcriptional regulator [Rhodopse... 448 e-124 ref|NP_949747.1| glycerol-3-phosphate regulon repressor GlpR [Rh... 444 e-123 >ref|NP_769073.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47698.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 281 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 241/271 (88%), Positives = 253/271 (93%), Gaps = 1/271 (0%) Query: 1 VAGLSHRQTEILNIARAFGRVMVEDLAKRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIA 60 + GL+HRQ EILNIARA GRVMVE+LA+RFEVSAQTIRKDLNDLC++RSLTRIHGGAIIA Sbjct: 1 MTGLTHRQAEILNIARASGRVMVEELARRFEVSAQTIRKDLNDLCERRSLTRIHGGAIIA 60 Query: 61 SGVENLAYEARRFVAAEEKKAIGAAAAARIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 SGVENLAYEARRFVAAEEKKAIGAAAA+ IPNGCSLFINIGTTTEEVASALTSHEDLLVI Sbjct: 61 SGVENLAYEARRFVAAEEKKAIGAAAASLIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 Query: 121 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG Sbjct: 121 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 Query: 181 ALLDFDYREVQVAQAIIANARNVMLVSDSTKLRRSAPVRIAHMSQIQTFVTDSPLPAALA 240 ALLDFDYREVQVAQAIIANAR+VMLV+DSTKLRRSAPVRIAHM+QIQTFVTD LP LA Sbjct: 181 ALLDFDYREVQVAQAIIANARSVMLVADSTKLRRSAPVRIAHMTQIQTFVTDQELPERLA 240 Query: 241 NICHSRGIEVVVAMDKPQVDLDDNGADAAAA 271 ICHS+GIEVV AM K D+DD ADA A Sbjct: 241 TICHSKGIEVVEAMPKG-ADIDDVQADAQEA 270 >ref|YP_487820.1| DeoR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08909.1| transcriptional regulator, DeoR family [Rhodopseudomonas palustris HaA2] Length = 284 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/266 (83%), Positives = 247/266 (92%) Query: 1 VAGLSHRQTEILNIARAFGRVMVEDLAKRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIA 60 V LSHRQ+EILN+ARA GRVMV+DLA+RF+VSAQTIRKDLNDLCDQRSLTRIHGGAIIA Sbjct: 19 VTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLNDLCDQRSLTRIHGGAIIA 78 Query: 61 SGVENLAYEARRFVAAEEKKAIGAAAAARIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 SGVENLAYEARRFVAAEEK+AIG AAA++IP+GCSLFINIGTTTEEVASALTSH+DLLVI Sbjct: 79 SGVENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGTTTEEVASALTSHQDLLVI 138 Query: 121 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 TNNLNVAMLLY++PRIEV+VAGGTVRR+DGAV+GS A LIGQFKVDYAIIGASAIDEEG Sbjct: 139 TNNLNVAMLLYKYPRIEVIVAGGTVRRSDGAVIGSAAIGLIGQFKVDYAIIGASAIDEEG 198 Query: 181 ALLDFDYREVQVAQAIIANARNVMLVSDSTKLRRSAPVRIAHMSQIQTFVTDSPLPAALA 240 ALLDFDYREVQ +QAIIANAR+VMLV+DSTKLRRSAPVRIAH+SQIQTFVTD LP AL Sbjct: 199 ALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAHLSQIQTFVTDEALPPALQ 258 Query: 241 NICHSRGIEVVVAMDKPQVDLDDNGA 266 +IC +RGIEV+ A+ K DLD++ A Sbjct: 259 SICDTRGIEVIAALPKRADDLDESAA 284 >ref|YP_001238305.1| DeoR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34399.1| transcriptional regulator, DeoR family [Bradyrhizobium sp. BTAi1] Length = 277 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/251 (89%), Positives = 239/251 (95%) Query: 1 VAGLSHRQTEILNIARAFGRVMVEDLAKRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIA 60 +A LS RQT+ILNIARA GRVMVEDLA+RFEVSAQTIRKDLNDLC+QR+LTRIHGGAIIA Sbjct: 1 MAVLSQRQTDILNIARASGRVMVEDLARRFEVSAQTIRKDLNDLCEQRALTRIHGGAIIA 60 Query: 61 SGVENLAYEARRFVAAEEKKAIGAAAAARIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 SGVENLAYEARRFVAA+EKKAIG AAARIPNG SLFINIGTTTEEVASAL+SH+DLLVI Sbjct: 61 SGVENLAYEARRFVAADEKKAIGTVAAARIPNGSSLFINIGTTTEEVASALSSHQDLLVI 120 Query: 121 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 TNNLNVAMLLY HPRIEV+VAGGTVRR+DG VVGSTATQLIGQFKVDYAIIGASAIDEEG Sbjct: 121 TNNLNVAMLLYPHPRIEVIVAGGTVRRSDGGVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 Query: 181 ALLDFDYREVQVAQAIIANARNVMLVSDSTKLRRSAPVRIAHMSQIQTFVTDSPLPAALA 240 ALLDFDYREVQVAQAIIANAR+VMLV+DSTKL RSAPVRIAH+SQIQTFVTD PLP LA Sbjct: 181 ALLDFDYREVQVAQAIIANARSVMLVADSTKLHRSAPVRIAHLSQIQTFVTDRPLPDGLA 240 Query: 241 NICHSRGIEVV 251 ++CHSRGIEVV Sbjct: 241 SLCHSRGIEVV 251 >ref|YP_531241.1| DeoR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD86922.1| transcriptional regulator, DeoR family [Rhodopseudomonas palustris BisB18] Length = 274 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/263 (84%), Positives = 246/263 (93%) Query: 1 VAGLSHRQTEILNIARAFGRVMVEDLAKRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIA 60 +AGL+HRQ+EILNIAR+FGRVMV+DL +RFEVSAQTIRKDLNDLCD+RSLTRIHGGAIIA Sbjct: 1 MAGLTHRQSEILNIARSFGRVMVDDLTRRFEVSAQTIRKDLNDLCDRRSLTRIHGGAIIA 60 Query: 61 SGVENLAYEARRFVAAEEKKAIGAAAAARIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 SGVENLAYEARRFVAAEEKKAIGAAAAA+IPNGCSLFINIGTTTEEVASALTSHEDLLVI Sbjct: 61 SGVENLAYEARRFVAAEEKKAIGAAAAAQIPNGCSLFINIGTTTEEVASALTSHEDLLVI 120 Query: 121 TNNLNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEG 180 TNNLNVAM LYRHPRIEV+VAGGTVRRADGAV+GS A LIGQFKVDYAIIGASAIDEEG Sbjct: 121 TNNLNVAMQLYRHPRIEVIVAGGTVRRADGAVIGSAAISLIGQFKVDYAIIGASAIDEEG 180 Query: 181 ALLDFDYREVQVAQAIIANARNVMLVSDSTKLRRSAPVRIAHMSQIQTFVTDSPLPAALA 240 ALLDFDYREVQ AQAI+ANAR+VMLV+DSTKLRRSAPVRIAH+SQIQTFVTD LP +L Sbjct: 181 ALLDFDYREVQAAQAIVANARSVMLVADSTKLRRSAPVRIAHLSQIQTFVTDLALPDSLQ 240 Query: 241 NICHSRGIEVVVAMDKPQVDLDD 263 +IC ++GI V+ A+ K V+ ++ Sbjct: 241 SICDAKGIHVITALPKRPVESEE 263 >ref|NP_949747.1| glycerol-3-phosphate regulon repressor GlpR [Rhodopseudomonas palustris CGA009] emb|CAE29852.1| glycerol-3-phosphate regulon repressor glpR, DeoR family [Rhodopseudomonas palustris CGA009] Length = 265 Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/263 (84%), Positives = 245/263 (93%), Gaps = 1/263 (0%) Query: 4 LSHRQTEILNIARAFGRVMVEDLAKRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIASGV 63 L+HRQ+EILN+ARA GRVMVEDL +RFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIASGV Sbjct: 4 LTHRQSEILNLARASGRVMVEDLVRRFEVSAQTIRKDLNDLCDQRSLTRIHGGAIIASGV 63 Query: 64 ENLAYEARRFVAAEEKKAIGAAAAARIPNGCSLFINIGTTTEEVASALTSHEDLLVITNN 123 NLAYEARRFVAAEEKKAIGAAAAA+IPNGCSLFINIGTTTEEVASAL++H+DLLVITNN Sbjct: 64 ANLAYEARRFVAAEEKKAIGAAAAAQIPNGCSLFINIGTTTEEVASALSAHQDLLVITNN 123 Query: 124 LNVAMLLYRHPRIEVVVAGGTVRRADGAVVGSTATQLIGQFKVDYAIIGASAIDEEGALL 183 LNVAMLLYRHPRIEV+VAGGTVRRADGAV+GSTAT LIGQFKVDYAIIGASAIDEEGALL Sbjct: 124 LNVAMLLYRHPRIEVIVAGGTVRRADGAVIGSTATSLIGQFKVDYAIIGASAIDEEGALL 183 Query: 184 DFDYREVQVAQAIIANARNVMLVSDSTKLRRSAPVRIAHMSQIQTFVTDSPLPAALANIC 243 DFDYREVQ +QAIIANAR+VMLV+DSTKL R+APVRIAH+SQIQTFVTD LP++L IC Sbjct: 184 DFDYREVQASQAIIANARSVMLVADSTKLERNAPVRIAHLSQIQTFVTDRALPSSLQAIC 243 Query: 244 HSRGIEVVVAMDKPQVDLDDNGA 266 + GIEV+ A ++DLD++ A Sbjct: 244 DTNGIEVIEAC-AAKLDLDESAA 265