BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0252.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769066.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicu... 702 0.0 ref|YP_576393.1| acyl-CoA dehydrogenase [Nitrobacter hamburgensi... 644 0.0 ref|ZP_07025140.1| Protein of unknown function DUF1974 [Afipia s... 633 e-179 ref|ZP_08628606.1| butyryl-CoA dehydrogenase [Bradyrhizobiaceae ... 629 e-178 ref|YP_002288218.1| acyl-coenzyme a dehydrogenase (acdh) [Oligot... 625 e-177 >ref|NP_769066.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC47691.1| blr2426 [Bradyrhizobium japonicum USDA 110] Length = 759 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/497 (73%), Positives = 398/497 (80%), Gaps = 52/497 (10%) Query: 59 ARGRRRGRXSLSAAGAAYAARTTGAYARIREQFGISISKFEGIEEPLARIAGXGSSGGAM 118 A GR SLSAAGAAYAARTTGAYARIREQFGISISKFEG+EEPLARI Sbjct: 315 AAGRGISLPSLSAAGAAYAARTTGAYARIREQFGISISKFEGVEEPLARIVAT------- 367 Query: 119 HGSPGASRSEGVTVGRGQGGARESGRAEGQMGRGAAERGQTTARPAYLLDAARRLTCAAL 178 AY LDAARRLTCAAL Sbjct: 368 ---------------------------------------------AYQLDAARRLTCAAL 382 Query: 179 NEGHHPAVISGIMKLHATERMRIAIDDAMDIHGGKAVIDGPQNYLGGLYRSVPVGITVEG 238 N G HPAVISGIMKLHATERMR A+DDAMDIHGGKAVI+GPQNYLG L+R+VPVGITVEG Sbjct: 383 NAGVHPAVISGIMKLHATERMRTAVDDAMDIHGGKAVIEGPQNYLGNLHRAVPVGITVEG 442 Query: 239 ANILTRNLIVFGQGAIRAHPYLLQEMNALSEPDRDKGLTAFDTAFWKHVGHSFATMFRAW 298 ANILTRNLIVFGQGAIRAHPYLL EMNAL++ DR++GLTAFDTAFWKHVGHSF T+FRA+ Sbjct: 443 ANILTRNLIVFGQGAIRAHPYLLDEMNALADTDRERGLTAFDTAFWKHVGHSFQTLFRAF 502 Query: 299 GRNWSFGLFAPAPDAGDATEFYRQLSRYSSAFALCADMALLTLGGALKRKEMLSARFGDI 358 GR+W+FG FA APDAGDAT FYRQLSRYS+AFALCADMALLTLGGALKRKEMLSARFGDI Sbjct: 503 GRSWTFGAFASAPDAGDATPFYRQLSRYSAAFALCADMALLTLGGALKRKEMLSARFGDI 562 Query: 359 LSELYLLSAALKRWQDEGRQKEDLPALEWCMASGFKTIENRFAEIFANLPNRPVAWLLKF 418 LSELYLLSAALKRWQDEGRQ ED ALEWCMA+GFKTIENR AEI ANLPNR VA LK Sbjct: 563 LSELYLLSAALKRWQDEGRQTEDFAALEWCMATGFKTIENRLAEILANLPNRFVAGFLKL 622 Query: 419 LIQPFGARVTGPTDRIVHLCAQLVLSPSAARDRLTPDLAFVEDDGGIARLEKAFRLVTEA 478 ++QPFGARV GP+DR+VH CA LVL PSA RDRLT DLA+V+DDGG ARLE+AF+LV Sbjct: 623 VVQPFGARVLGPSDRVVHQCASLVLEPSAVRDRLTADLAYVDDDGGFARLERAFKLVAGT 682 Query: 479 EDAAKQLRAARLHDWREAVKKGVITEADGEKLAAAHDAVAKIIEVDDFAPEALSPIYKKS 538 + AK++RAA + DW+EAV KGVIT+A+GE+LAA +AVAK+IEVDDFAPEALSPIYKK+ Sbjct: 683 DAIAKRMRAAHISDWKEAVAKGVITQAEGEQLAATREAVAKVIEVDDFAPEALSPIYKKT 742 Query: 539 ADVHQFFQELGEQRAAS 555 DVHQFFQELGEQRAAS Sbjct: 743 GDVHQFFQELGEQRAAS 759 >ref|YP_576393.1| acyl-CoA dehydrogenase [Nitrobacter hamburgensis X14] gb|ABE61933.1| acyl-CoA dehydrogenase-like protein [Nitrobacter hamburgensis X14] Length = 756 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/497 (67%), Positives = 374/497 (75%), Gaps = 53/497 (10%) Query: 59 ARGRRRGRXSLSAAGAAYAARTTGAYARIREQFGISISKFEGIEEPLARIAGXGSSGGAM 118 A GR SLSAAGAA+AARTTGAYAR+REQFGI I KFEGIEEPLARIA Sbjct: 311 AAGRGISLPSLSAAGAAFAARTTGAYARVREQFGIPIGKFEGIEEPLARIAAT------- 363 Query: 119 HGSPGASRSEGVTVGRGQGGARESGRAEGQMGRGAAERGQTTARPAYLLDAARRLTCAAL 178 AYL+DAARRLTCAAL Sbjct: 364 ---------------------------------------------AYLIDAARRLTCAAL 378 Query: 179 NEGHHPAVISGIMKLHATERMRIAIDDAMDIHGGKAVIDGPQNYLGGLYRSVPVGITVEG 238 NEGHHPAVISGIMKLHATER+R IDDAMDIHGGKAVIDGPQNY+G LYR VPV ITVEG Sbjct: 379 NEGHHPAVISGIMKLHATERLRTVIDDAMDIHGGKAVIDGPQNYIGNLYRGVPVSITVEG 438 Query: 239 ANILTRNLIVFGQGAIRAHPYLLQEMNALSEPDRDKGLTAFDTAFWKHVGHSFATMFRAW 298 ANILTRNLI+FGQGAIRAHP+LLQEMNAL + D+ +GL FD AFW H+ HSF T+FRAW Sbjct: 439 ANILTRNLIIFGQGAIRAHPFLLQEMNALGDADKLRGLDTFDKAFWAHISHSFTTLFRAW 498 Query: 299 GRNWSFGLFAPAPD-AGDATEFYRQLSRYSSAFALCADMALLTLGGALKRKEMLSARFGD 357 GR+WS G+FAPAPD AG T FYRQLSRYSSAFALCADMALLTLGG LKRKEMLSARFGD Sbjct: 499 GRSWSGGVFAPAPDDAGAVTGFYRQLSRYSSAFALCADMALLTLGGKLKRKEMLSARFGD 558 Query: 358 ILSELYLLSAALKRWQDEGRQKEDLPALEWCMASGFKTIENRFAEIFANLPNRPVAWLLK 417 ILSELYLLSA +KRW D+GRQ+ DLP +EWCMA+GF+TIE RFA+I ANLPNR VA +LK Sbjct: 559 ILSELYLLSAVIKRWHDDGRQEVDLPMVEWCMATGFRTIEQRFADILANLPNRFVALMLK 618 Query: 418 FLIQPFGARVTGPTDRIVHLCAQLVLSPSAARDRLTPDLAFVEDDGGIARLEKAFRLVTE 477 F+IQP GA+ GP+D +VH CAQLVL PS ARDRLT L+ V+D A LEKAF LVT Sbjct: 619 FMIQPLGAQARGPSDAVVHACAQLVLEPSVARDRLTSGLSQVDDGSSPALLEKAFLLVTA 678 Query: 478 AEDAAKQLRAARLHDWREAVKKGVITEADGEKLAAAHDAVAKIIEVDDFAPEALSPIYKK 537 AED +++RAARLHD EAVK+GVIT+ + E+ AAH+AV ++IEVDDFAPEALSPIYKK Sbjct: 679 AEDVFRRMRAARLHDADEAVKQGVITQVEAEQYKAAHEAVVRVIEVDDFAPEALSPIYKK 738 Query: 538 SADVHQFFQELGEQRAA 554 A VHQ QEL E RA Sbjct: 739 PAGVHQVVQELSETRAV 755 >ref|ZP_07025140.1| Protein of unknown function DUF1974 [Afipia sp. 1NLS2] gb|EFI52282.1| Protein of unknown function DUF1974 [Afipia sp. 1NLS2] Length = 754 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 320/497 (64%), Positives = 367/497 (73%), Gaps = 61/497 (12%) Query: 51 QSRVGAGH-------ARGRRRGRXSLSAAGAAYAARTTGAYARIREQFGISISKFEGIEE 103 Q+R+G G A GR S SA+GAAY AR GAYAR+REQF + I KFEGIEE Sbjct: 298 QARIGQGWKMLMSALAAGRGISLPSQSASGAAYCARNAGAYARVREQFKVPIGKFEGIEE 357 Query: 104 PLARIAGXGSSGGAMHGSPGASRSEGVTVGRGQGGARESGRAEGQMGRGAAERGQTTARP 163 PLARIAG Sbjct: 358 PLARIAGT---------------------------------------------------- 365 Query: 164 AYLLDAARRLTCAALNEGHHPAVISGIMKLHATERMRIAIDDAMDIHGGKAVIDGPQNYL 223 AY LDAARRLTCAALN+G HPAVISGIMKLHATER+RI +DDAMDIHGGKA+I+GPQNY+ Sbjct: 366 AYQLDAARRLTCAALNQGKHPAVISGIMKLHATERLRIVVDDAMDIHGGKAIIEGPQNYM 425 Query: 224 GGLYRSVPVGITVEGANILTRNLIVFGQGAIRAHPYLLQEMNALSEPDRDKGLTAFDTAF 283 G LYRSVPV ITVEGANILTRNLIVFGQGA RAHPYLL E+NA+ PD+D GL AFD +F Sbjct: 426 GNLYRSVPVAITVEGANILTRNLIVFGQGATRAHPYLLAEINAIGNPDKDAGLDAFDQSF 485 Query: 284 WKHVGHSFATMFRAWGRNWSFGLFAPAPDAGDATEFYRQLSRYSSAFALCADMALLTLGG 343 WKHVGH+F +FRAWGR+W+ GLFAPAPDAG AT +YRQLSRYSSAFALCADMALLTLGG Sbjct: 486 WKHVGHAFTNLFRAWGRSWTGGLFAPAPDAGAATGYYRQLSRYSSAFALCADMALLTLGG 545 Query: 344 ALKRKEMLSARFGDILSELYLLSAALKRWQDEGRQKEDLPALEWCMASGFKTIENRFAEI 403 ALKRKEMLSARFGDILSELYLLSAALKRW+DEGRQ DLPAL W MA+G +T+E RFAE+ Sbjct: 546 ALKRKEMLSARFGDILSELYLLSAALKRWEDEGRQDADLPALRWVMANGIRTMELRFAEV 605 Query: 404 FANLPNRPVAWLLKFLIQPFGARVTGPTDRIVHLCAQLVLSPSAARDRLTPDL--AFVED 461 ANLPNRPVAWLLKF++QP G+ GP+D++VH CAQ++LSPS RDRLT L A D Sbjct: 606 LANLPNRPVAWLLKFVVQPLGSNALGPSDKVVHQCAQMILSPSPERDRLTAGLYHAGAND 665 Query: 462 DGGIARLEKAFRLVTEAEDAAKQLRAARLHDWREAVKKGVITEADGEKLAAAHDAVAKII 521 DG +ARLE+AF LVT E K++RAA + DW+EA +G+IT AD E + A +AVAK+I Sbjct: 666 DGPLARLERAFLLVTANEPIEKKMRAAHIRDWQEAASRGIITAADVEAIKTAQEAVAKVI 725 Query: 522 EVDDFAPEALSPIYKKS 538 EVDDFAPEALSPIY+++ Sbjct: 726 EVDDFAPEALSPIYRQN 742 >ref|ZP_08628606.1| butyryl-CoA dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08671.1| butyryl-CoA dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] Length = 753 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 325/500 (65%), Positives = 364/500 (72%), Gaps = 59/500 (11%) Query: 51 QSRVGAGH-------ARGRRRGRXSLSAAGAAYAARTTGAYARIREQFGISISKFEGIEE 103 Q R+G G A GR S S+AGAAY AR TGAYARIREQF + I KFEGIEE Sbjct: 298 QERIGQGWKMLMTALAAGRGISLPSQSSAGAAYCARATGAYARIREQFHVPIGKFEGIEE 357 Query: 104 PLARIAGXGSSGGAMHGSPGASRSEGVTVGRGQGGARESGRAEGQMGRGAAERGQTTARP 163 PLARIAG Sbjct: 358 PLARIAGT---------------------------------------------------- 365 Query: 164 AYLLDAARRLTCAALNEGHHPAVISGIMKLHATERMRIAIDDAMDIHGGKAVIDGPQNYL 223 AY LDAARRLTCAALN+G HPAVISGIMKLHATER+RIA DDAMD+HGGKAVIDGPQNY+ Sbjct: 366 AYQLDAARRLTCAALNQGIHPAVISGIMKLHATERLRIATDDAMDVHGGKAVIDGPQNYM 425 Query: 224 GGLYRSVPVGITVEGANILTRNLIVFGQGAIRAHPYLLQEMNALSEPDRDKGLTAFDTAF 283 G LYRSVPV ITVEGANILTRNLIVFGQG++RAHPYLL EM A+ E D+ KGL FDT+F Sbjct: 426 GSLYRSVPVAITVEGANILTRNLIVFGQGSVRAHPYLLSEMTAIGEADQKKGLADFDTSF 485 Query: 284 WKHVGHSFATMFRAWGRNWSFGLFAPAPDAGDATEFYRQLSRYSSAFALCADMALLTLGG 343 WKHVGH+ FRAWGR+W+ G FAPAPDAG AT +YRQLSRYS+AFALC+DMALLTLGG Sbjct: 486 WKHVGHAITNTFRAWGRSWTGGAFAPAPDAGAATGYYRQLSRYSAAFALCSDMALLTLGG 545 Query: 344 ALKRKEMLSARFGDILSELYLLSAALKRWQDEGRQKEDLPALEWCMASGFKTIENRFAEI 403 ALKR+EMLSAR GDILSELYLLSAALKRW+DEGRQ+ D PALEW MA+G +TIENR AE+ Sbjct: 546 ALKRREMLSARLGDILSELYLLSAALKRWEDEGRQEADFPALEWVMANGIRTIENRLAEV 605 Query: 404 FANLPNRPVAWLLKFLIQPFGARVTGPTDRIVHLCAQLVLSPSAARDRLTPDLAFVEDDG 463 ANLPNR V +LK LIQP GA GP+D +VH CAQL+L+PSAARDRLT L +DDG Sbjct: 606 IANLPNRFVGMILKVLIQPLGANPLGPSDEVVHRCAQLILAPSAARDRLTAGLYHTDDDG 665 Query: 464 GIARLEKAFRLVTEAEDAAKQLRAARLHDWREAVKKGVITEADGEKLAAAHDAVAKIIEV 523 +ARLEKAF LVT E K++ AA L DW +AVKKGVIT +GEK+ AAHDAVA++IEV Sbjct: 666 PLARLEKAFLLVTANEAIEKKMHAAHLRDWSQAVKKGVITAEEGEKIKAAHDAVARVIEV 725 Query: 524 DDFAPEALSPIYKKSADVHQ 543 DDFAPEALSPIY K + Q Sbjct: 726 DDFAPEALSPIYHKRLESKQ 745 >ref|YP_002288218.1| acyl-coenzyme a dehydrogenase (acdh) [Oligotropha carboxidovorans OM5] ref|YP_004633682.1| acyl-coenzyme A dehydrogenase FadE [Oligotropha carboxidovorans OM5] gb|ACI92353.1| acyl-coenzyme a dehydrogenase (acdh) [Oligotropha carboxidovorans OM5] gb|AEI03864.1| acyl-coenzyme A dehydrogenase FadE [Oligotropha carboxidovorans OM4] gb|AEI07441.1| acyl-coenzyme A dehydrogenase FadE [Oligotropha carboxidovorans OM5] Length = 754 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 320/493 (64%), Positives = 363/493 (73%), Gaps = 61/493 (12%) Query: 51 QSRVGAGH-------ARGRRRGRXSLSAAGAAYAARTTGAYARIREQFGISISKFEGIEE 103 Q+R+G G A GR S SA+GAAY ART GAYAR+REQF + I KFEGIEE Sbjct: 298 QARIGQGWKMLMSALAAGRGISLPSQSASGAAYCARTAGAYARVREQFKVPIGKFEGIEE 357 Query: 104 PLARIAGXGSSGGAMHGSPGASRSEGVTVGRGQGGARESGRAEGQMGRGAAERGQTTARP 163 PLARIAG Sbjct: 358 PLARIAGT---------------------------------------------------- 365 Query: 164 AYLLDAARRLTCAALNEGHHPAVISGIMKLHATERMRIAIDDAMDIHGGKAVIDGPQNYL 223 AY LDAARRLTCAALN+G HPAVISGIMKLHATER+R +DD MDIHGGKA+I+GPQNY+ Sbjct: 366 AYQLDAARRLTCAALNQGKHPAVISGIMKLHATERLRTVVDDGMDIHGGKAIIEGPQNYM 425 Query: 224 GGLYRSVPVGITVEGANILTRNLIVFGQGAIRAHPYLLQEMNALSEPDRDKGLTAFDTAF 283 G LYRSVPV ITVEGANILTRNLIVFGQGA RAHPYLLQE+NA+ PD+ GL AFD+AF Sbjct: 426 GNLYRSVPVAITVEGANILTRNLIVFGQGATRAHPYLLQEINAIGNPDKAAGLDAFDSAF 485 Query: 284 WKHVGHSFATMFRAWGRNWSFGLFAPAPDAGDATEFYRQLSRYSSAFALCADMALLTLGG 343 WKHVGH+FA +FRAWGR+W+ GLFAPAPDAG +YRQLSRY+SAFAL ADMALLTLGG Sbjct: 486 WKHVGHAFANLFRAWGRSWTGGLFAPAPDAGPVIGYYRQLSRYASAFALGADMALLTLGG 545 Query: 344 ALKRKEMLSARFGDILSELYLLSAALKRWQDEGRQKEDLPALEWCMASGFKTIENRFAEI 403 ALKRKEMLSARFGDILSELYLLSAALKRW+DEGRQ+ DLPAL W MA+G +T+E RFAE+ Sbjct: 546 ALKRKEMLSARFGDILSELYLLSAALKRWEDEGRQQADLPALRWVMANGIRTMELRFAEV 605 Query: 404 FANLPNRPVAWLLKFLIQPFGARVTGPTDRIVHLCAQLVLSPSAARDRLTPDL--AFVED 461 ANLPNRP+AWLLKF++QPFG R GP+D++VH CAQ++LSPSA RDRLT L A D Sbjct: 606 LANLPNRPIAWLLKFVVQPFGPRALGPSDKVVHQCAQMILSPSAERDRLTAGLYHAGAND 665 Query: 462 DGGIARLEKAFRLVTEAEDAAKQLRAARLHDWREAVKKGVITEADGEKLAAAHDAVAKII 521 DG +ARLE AFRLV E K+LRAA + DW+EA + +IT AD E L AA +AVAK+I Sbjct: 666 DGPLARLEHAFRLVVANEPIEKRLRAAHIRDWQEAASRSIITAADVEALTAAKEAVAKVI 725 Query: 522 EVDDFAPEALSPI 534 EVDDFAPEALSPI Sbjct: 726 EVDDFAPEALSPI 738