BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0241.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769059.1| hypothetical protein blr2419 [Bradyrhizobium ja... 552 e-155 ref|YP_001238295.1| hypothetical protein BBta_2209 [Bradyrhizobi... 481 e-134 ref|YP_001204000.1| hypothetical protein BRADO1895 [Bradyrhizobi... 477 e-132 ref|ZP_01226670.1| conserved hypothetical protein [Aurantimonas ... 433 e-119 ref|YP_001601466.1| hypothetical protein GDI_1210 [Gluconacetoba... 421 e-115 >ref|NP_769059.1| hypothetical protein blr2419 [Bradyrhizobium japonicum USDA 110] dbj|BAC47684.1| blr2419 [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 273/334 (81%), Positives = 293/334 (87%), Gaps = 5/334 (1%) Query: 1 VIERCHHHILFTRIPDYRRADLKQAQSRDKSVFEYWTHALSYVPSKDIGIFLPAMKAHKR 60 VIERCHHHILF+RIP YRRADL+QAQS D+SVFEYWTHALSY+PS D FLPAM+ H+R Sbjct: 55 VIERCHHHILFSRIPSYRRADLRQAQSVDRSVFEYWTHALSYIPSNDFRFFLPAMREHRR 114 Query: 61 EGHKWFSSVTPADTRKVLRLLRAGPLTIRDIDDDVLTEKEHLWQSRKPSKRALQLAFYGG 120 EGHKWF+SV PADTRKV+RL+RA PLTIRDI+DDVLTEKEHLWQSRKPSKRALQLAFY G Sbjct: 115 EGHKWFASVKPADTRKVMRLVRAAPLTIRDIEDDVLTEKEHLWQSRKPSKRALQLAFYTG 174 Query: 121 VVTISERAGMLKTYELMTRHFGWDK--PPASAR--TAYLLDRALRSQGIVSLDSICHLDA 176 VTISER GMLKTYELMTRHFGWDK PASA+ TAYLLDRALRSQG+VSLDS+CHLDA Sbjct: 175 AVTISERQGMLKTYELMTRHFGWDKLPKPASAKDITAYLLDRALRSQGVVSLDSVCHLDA 234 Query: 177 PSKKAVRSLIEARLRRKELVQVALEGAGKQEHWARPEVLEATGEG-DPTLVHILSPFDPL 235 PSKKAV LI AR+RR ELV VA++GAGKQEHW P VLEA GEG P LVHILSPFDPL Sbjct: 235 PSKKAVARLIAARVRRGELVPVAIDGAGKQEHWGAPAVLEAGGEGPSPDLVHILSPFDPL 294 Query: 236 IIQRKRTELFFGYGHRFEAYVPKEKRLFGYFALPVLVGDDIVAALDLKTDRQNKKLLMQK 295 IIQRKRT L FGY H FEAYVPK KR GYFALPVLVGD+IVAALDLKTDRQ KKLLMQK Sbjct: 295 IIQRKRTSLIFGYNHLFEAYVPKAKRKLGYFALPVLVGDEIVAALDLKTDRQAKKLLMQK 354 Query: 296 WSWVGTGKKQAARKELKRRIEEELDRFERFQLAE 329 W+WVG G+K A RKELKR IEEELDRFERFQLA+ Sbjct: 355 WTWVGEGRKTAGRKELKRVIEEELDRFERFQLAD 388 >ref|YP_001238295.1| hypothetical protein BBta_2209 [Bradyrhizobium sp. BTAi1] gb|ABQ34389.1| hypothetical protein BBta_2209 [Bradyrhizobium sp. BTAi1] Length = 404 Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/336 (69%), Positives = 273/336 (81%), Gaps = 7/336 (2%) Query: 1 VIERCHHHILFTRIPDYRRADLKQAQSRDKSVFEYWTHALSYVPSKDIGIFLPAMKAHKR 60 VIERCHHHILF+RIP YRRADL+QAQS DK+VFEYWTHALSYVP +D F+PAM+ ++R Sbjct: 69 VIERCHHHILFSRIPAYRRADLRQAQSADKTVFEYWTHALSYVPVQDFRYFVPAMRRYRR 128 Query: 61 EGHKWFSSVTPADTRKVLRLLR-AGPLTIRDIDDDVLTEKEHLWQSRKPSKRALQLAFYG 119 EGH WF +V P DTRKV+RL+R G LTIRDIDDDVL EK+H W SRKPSKRALQL FY Sbjct: 129 EGHGWFKTVKPEDTRKVMRLVRQGGALTIRDIDDDVLREKDHAWASRKPSKRALQLGFYE 188 Query: 120 GVVTISERAGMLKTYELMTRHFGWDKPPASAR----TAYLLDRALRSQGIVSLDSICHLD 175 GV+T+S R GMLKTY+L TRHFGW++ P A YLLDR LR+QG+VSLDS+CHL+ Sbjct: 189 GVLTVSGRDGMLKTYDLTTRHFGWERLPKGASEREIATYLLDRGLRAQGVVSLDSLCHLN 248 Query: 176 APSKKAVRSLIEARLRRKELVQVALEGAGKQEHWARPEVLEATGEGDPTLVHILSPFDPL 235 A K VR +I+ R+RR ELV VALEGAG+QEHWA P L E P VHILSPFDPL Sbjct: 249 AARKSDVRRVIDGRVRRGELVPVALEGAGRQEHWATPGALAEVIEISPERVHILSPFDPL 308 Query: 236 IIQRKRTELFFGYGHRFEAYVPKEKRLFGYFALPVLVGDDIVAALDLKTDRQNKKLLMQK 295 IIQRKRT+ FGY HRFEAYVPK++RLFGYFALPVLVG++IVAALDLKTDRQN +LLMQ+ Sbjct: 309 IIQRKRTQAIFGYDHRFEAYVPKDRRLFGYFALPVLVGEEIVAALDLKTDRQNGRLLMQQ 368 Query: 296 WSWVGTGK--KQAARKELKRRIEEELDRFERFQLAE 329 WSWVG GK + A RK+LKRRIE+EL RF++FQL + Sbjct: 369 WSWVGAGKSARGAGRKDLKRRIEDELHRFQKFQLGD 404 >ref|YP_001204000.1| hypothetical protein BRADO1895 [Bradyrhizobium sp. ORS 278] emb|CAL75763.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 403 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 236/336 (70%), Positives = 271/336 (80%), Gaps = 7/336 (2%) Query: 1 VIERCHHHILFTRIPDYRRADLKQAQSRDKSVFEYWTHALSYVPSKDIGIFLPAMKAHKR 60 VIERCHHHILF+RIP YRRADL+QAQS DK+VFEYWTHALSYVP +D F+PAM+ ++R Sbjct: 68 VIERCHHHILFSRIPAYRRADLRQAQSADKTVFEYWTHALSYVPVQDFRYFVPAMRRYRR 127 Query: 61 EGHKWFSSVTPADTRKVLRLLR-AGPLTIRDIDDDVLTEKEHLWQSRKPSKRALQLAFYG 119 GH+W ++V P DTRKV+RL+R G LTIRDIDDD L EK+H W SRKPSKRALQL FY Sbjct: 128 VGHRWLTTVKPEDTRKVMRLIRQGGALTIRDIDDDELREKDHAWASRKPSKRALQLGFYE 187 Query: 120 GVVTISERAGMLKTYELMTRHFGWDKPPASAR----TAYLLDRALRSQGIVSLDSICHLD 175 GV+T++ R GMLKTY+L TRHFGWD+ P A AYLLDR LR+QG+VSLDS+CHL+ Sbjct: 188 GVLTVAGRDGMLKTYDLTTRHFGWDRLPKGATEREIAAYLLDRGLRAQGVVSLDSLCHLN 247 Query: 176 APSKKAVRSLIEARLRRKELVQVALEGAGKQEHWARPEVLEATGEGDPTLVHILSPFDPL 235 AP K VR +IEAR+RR EL VALEGA KQEHWA P L+ E P VHILSPFDPL Sbjct: 248 APRKADVRKVIEARVRRGELRPVALEGAAKQEHWATPAALDERIEISPERVHILSPFDPL 307 Query: 236 IIQRKRTELFFGYGHRFEAYVPKEKRLFGYFALPVLVGDDIVAALDLKTDRQNKKLLMQK 295 IIQRKRT+ FGY HRFEAYVPK+KRLFGYFALPVLVG++IVAA+DLKTDRQN KLLMQK Sbjct: 308 IIQRKRTQAIFGYDHRFEAYVPKDKRLFGYFALPVLVGEEIVAAIDLKTDRQNGKLLMQK 367 Query: 296 WSWVGTGK--KQAARKELKRRIEEELDRFERFQLAE 329 WSWVG GK + RK LKR IE+EL RF+RFQL + Sbjct: 368 WSWVGPGKAARGDQRKALKRIIEDELHRFQRFQLGD 403 >ref|ZP_01226670.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gb|EAS50544.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 385 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/332 (65%), Positives = 254/332 (76%), Gaps = 9/332 (2%) Query: 1 VIERCHHHILFTRIPDYRRADLKQAQSRDKSVFEYWTHALSYVPSKDIGIFLPAMKAHKR 60 VIERCHHHIL++RIP YRRADL +AQS DKSVFEYWTHALSYVP++DI FLP MK H+ Sbjct: 56 VIERCHHHILWSRIPGYRRADLHRAQSVDKSVFEYWTHALSYVPTRDIRFFLPEMKRHRE 115 Query: 61 EGHKWFSSVTPADTRKVLRLLRA-GPLTIRDIDDDVLTEKEHLWQSRKPSKRALQLAFYG 119 +WF V+PAD +KVL L+R GPL+IRDI+DDVL EK+H W SRKPSKRALQ+AFY Sbjct: 116 APSRWFERVSPADLKKVLTLIRKEGPLSIRDIEDDVLVEKDHAWASRKPSKRALQMAFYT 175 Query: 120 GVVTISERAGMLKTYELMTRHFGWDKPP--ASAR--TAYLLDRALRSQGIVSLDSICHLD 175 G +T+SER GMLKTYEL RHFGW++ P AS R AY+LDRALR+QG+VSLDS+CHL Sbjct: 176 GALTVSERTGMLKTYELTDRHFGWERRPRPASERQVAAYMLDRALRAQGLVSLDSVCHLS 235 Query: 176 APSKKAVRSLIEARLRRKELVQVALEGAGKQEHWARPEVLEATGEGDPTLVHILSPFDPL 235 A K A+R LI AR+R + LV VA+E AGK HWA PE L E +VH+LSPFDPL Sbjct: 236 AGRKPAIRELIAARVRSRRLVPVAVEDAGKVGHWAEPETLATIPEATAPVVHVLSPFDPL 295 Query: 236 IIQRKRTELFFGYGHRFEAYVPKEKRLFGYFALPVLVGDDIVAALDLKTDRQNKKLLMQK 295 IIQR+R LFF Y HRFEAYVPKEKR+ GYFALPVLVGD IVAA+DLKTDR +LL Q+ Sbjct: 296 IIQRRRLALFFDYEHRFEAYVPKEKRVLGYFALPVLVGDRIVAAIDLKTDRAEGRLLTQQ 355 Query: 296 WSWVGTGKKQAARKELKRRIEEELDRFERFQL 327 WSWVG G+ + IE+ L RFE FQL Sbjct: 356 WSWVGEGEPSRHTQP----IEDALHRFEAFQL 383 >ref|YP_001601466.1| hypothetical protein GDI_1210 [Gluconacetobacter diazotrophicus PAl 5] ref|YP_002276297.1| hypothetical protein Gdia_1922 [Gluconacetobacter diazotrophicus PAl 5] emb|CAP55153.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI51682.1| protein of unknown function DUF1006 [Gluconacetobacter diazotrophicus PAl 5] Length = 380 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/332 (64%), Positives = 247/332 (74%), Gaps = 10/332 (3%) Query: 1 VIERCHHHILFTRIPDYRRADLKQAQSRDKSVFEYWTHALSYVPSKDIGIFLPAMKAHKR 60 VIERCHHHIL++RIPDYRR L QAQS DK+VFEYWTHALSYVP++D+ FL M+ ++ Sbjct: 51 VIERCHHHILWSRIPDYRREHLHQAQSIDKTVFEYWTHALSYVPTRDLRFFLADMRQRRQ 110 Query: 61 EGHKWFSSVTPADTRKVL-RLLRAGPLTIRDIDDDVLTEKEHLWQSRKPSKRALQLAFYG 119 WF +VTP D RKVL R+ R G L+IRDIDDDVL EK+H W SRKPSKRALQLAF Sbjct: 111 SPGSWFDTVTPEDLRKVLARVRRDGALSIRDIDDDVLVEKDHAWASRKPSKRALQLAFLT 170 Query: 120 GVVTISERAGMLKTYELMTRHFGWDKPP---ASARTA-YLLDRALRSQGIVSLDSICHLD 175 G + +S RAGMLKTYEL RHFGW+ PP + RT YLLDRALRSQG+VSL+SICHLD Sbjct: 171 GALAVSARAGMLKTYELTNRHFGWETPPRPVSERRTLDYLLDRALRSQGVVSLESICHLD 230 Query: 176 APSKKAVRSLIEARLRRKELVQVALEGAGKQEHWARPEVLEATGEGDPTLVHILSPFDPL 235 AP K +R +IE R+RR LV VALE AG+ HWARPE L D VHILSPFDPL Sbjct: 231 APRKAGIRQVIEDRVRRNHLVPVALEDAGRTGHWARPEDLAPLPPMDHAPVHILSPFDPL 290 Query: 236 IIQRKRTELFFGYGHRFEAYVPKEKRLFGYFALPVLVGDDIVAALDLKTDRQNKKLLMQK 295 IIQR+R FGY HRFEAYVPK KR+FGYFALPVLVGD IVAA+DLK DR+ + L +Q+ Sbjct: 291 IIQRRRLRQMFGYDHRFEAYVPKAKRVFGYFALPVLVGDTIVAAIDLKADRRRRSLQIQQ 350 Query: 296 WSWVGTGKKQAARKELKRRIEEELDRFERFQL 327 W+W+G G K RIE+ L RFERFQ Sbjct: 351 WTWIGPGSDAH-----KGRIEDMLHRFERFQF 377