BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0232.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001203992.1| hypothetical protein BRADO1886 [Bradyrhizobi...   315   2e-84
ref|ZP_08628601.1| hypothetical protein CSIRO_1684 [Bradyrhizobi...   310   7e-83
ref|NP_769047.1| hypothetical protein blr2407 [Bradyrhizobium ja...   301   2e-80
ref|YP_001238288.1| hypothetical protein BBta_2202 [Bradyrhizobi...   296   8e-79
ref|ZP_07028050.1| Cupin 2 conserved barrel domain protein [Afip...   292   2e-77

>ref|YP_001203992.1| hypothetical protein BRADO1886 [Bradyrhizobium sp. ORS 278]
 emb|CAL75755.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 172

 Score =  315 bits (806), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/172 (89%), Positives = 160/172 (93%), Gaps = 1/172 (0%)

Query: 1   MSGSHDHTHSHDHHHHDDERWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKL 60
           MSGSHDH H H H H  D+RWKHDGVRV+PGNQLD NVPST GMDRKAAINFARVGAQKL
Sbjct: 1   MSGSHDHAHGHSHDH-GDQRWKHDGVRVVPGNQLDGNVPSTPGMDRKAAINFARVGAQKL 59

Query: 61  WAGTVSIKPDAKTGAHHHGHLESIIYVVKGKARMRWGEKLQFTAEAGPGDFIFVPPYVPH 120
           WAGTV+IKPDAKTGAHHHGHLES+IYVVKGKARMRWGE+LQFTAEAGPGDFIFVPPYVPH
Sbjct: 60  WAGTVTIKPDAKTGAHHHGHLESVIYVVKGKARMRWGEQLQFTAEAGPGDFIFVPPYVPH 119

Query: 121 QEINASPDEVLECVLVRSDGEAVAINLDIEPVEKPENVLWVDPVHRHPDEKK 172
           QEINASPDEVLECVLVRSDGEAVAIN+DIEPVEKPE VLWVDPVHR P E K
Sbjct: 120 QEINASPDEVLECVLVRSDGEAVAINIDIEPVEKPETVLWVDPVHRDPAETK 171


>ref|ZP_08628601.1| hypothetical protein CSIRO_1684 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08666.1| hypothetical protein CSIRO_1684 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 177

 Score =  310 bits (793), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 151/158 (95%), Positives = 152/158 (96%)

Query: 14  HHHDDERWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKT 73
           H HDDERWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKT
Sbjct: 19  HAHDDERWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKT 78

Query: 74  GAHHHGHLESIIYVVKGKARMRWGEKLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLEC 133
           GAHHHGHLESIIYVVKGKARMRWGE LQFTAEAGPGDFIFVPPYVPHQEINASPDEVLEC
Sbjct: 79  GAHHHGHLESIIYVVKGKARMRWGEHLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLEC 138

Query: 134 VLVRSDGEAVAINLDIEPVEKPENVLWVDPVHRHPDEK 171
           VLVRSDGEAVAINLDIEPVEKPE VLWVDP+HR P  K
Sbjct: 139 VLVRSDGEAVAINLDIEPVEKPETVLWVDPIHRDPAAK 176


>ref|NP_769047.1| hypothetical protein blr2407 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47672.1| blr2406 [Bradyrhizobium japonicum USDA 110]
          Length = 170

 Score =  301 bits (772), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/153 (94%), Positives = 148/153 (96%)

Query: 20  RWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKTGAHHHG 79
           RWKHDGVRVIPGNQLD NVPSTAGMDR AAINFARVGAQKLWAGTVSIKPDAKTGAHHHG
Sbjct: 18  RWKHDGVRVIPGNQLDTNVPSTAGMDRAAAINFARVGAQKLWAGTVSIKPDAKTGAHHHG 77

Query: 80  HLESIIYVVKGKARMRWGEKLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRSD 139
           HLES+IYVVKGKARMRWGE LQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRSD
Sbjct: 78  HLESVIYVVKGKARMRWGESLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRSD 137

Query: 140 GEAVAINLDIEPVEKPENVLWVDPVHRHPDEKK 172
           GEAVAINLDIEPVEKPE VLW+DPVHR P+EKK
Sbjct: 138 GEAVAINLDIEPVEKPETVLWIDPVHRDPNEKK 170


>ref|YP_001238288.1| hypothetical protein BBta_2202 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34382.1| hypothetical protein BBta_2202 [Bradyrhizobium sp. BTAi1]
          Length = 172

 Score =  296 bits (758), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 141/154 (91%), Positives = 148/154 (96%)

Query: 19  ERWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKTGAHHH 78
           ERWKHDGVRVIPGNQLD NVPST GMDRKAAINFARVGAQKLWAGTV+I+PDAKTGAHHH
Sbjct: 17  ERWKHDGVRVIPGNQLDSNVPSTPGMDRKAAINFARVGAQKLWAGTVTIRPDAKTGAHHH 76

Query: 79  GHLESIIYVVKGKARMRWGEKLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRS 138
           GHLES+IYVVKGKARMRWGE+LQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRS
Sbjct: 77  GHLESVIYVVKGKARMRWGEQLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRS 136

Query: 139 DGEAVAINLDIEPVEKPENVLWVDPVHRHPDEKK 172
           DGEAVAIN+DIEPVEKPE VLW+DPVHR P E +
Sbjct: 137 DGEAVAINIDIEPVEKPETVLWIDPVHRDPAESQ 170


>ref|ZP_07028050.1| Cupin 2 conserved barrel domain protein [Afipia sp. 1NLS2]
 gb|EFI50871.1| Cupin 2 conserved barrel domain protein [Afipia sp. 1NLS2]
          Length = 166

 Score =  292 bits (747), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/153 (90%), Positives = 145/153 (94%)

Query: 20  RWKHDGVRVIPGNQLDPNVPSTAGMDRKAAINFARVGAQKLWAGTVSIKPDAKTGAHHHG 79
           RWKHDGVRVIPGNQLDPNVPST GMDRKAAINFAR GAQKLWAGTV+IKPDAKTGAHHHG
Sbjct: 14  RWKHDGVRVIPGNQLDPNVPSTPGMDRKAAINFARAGAQKLWAGTVTIKPDAKTGAHHHG 73

Query: 80  HLESIIYVVKGKARMRWGEKLQFTAEAGPGDFIFVPPYVPHQEINASPDEVLECVLVRSD 139
           HLESIIYVVKGKARMRWGE LQFTAEA PGDFIFVPPYVPHQEINAS DEVLECVLVRSD
Sbjct: 74  HLESIIYVVKGKARMRWGEHLQFTAEANPGDFIFVPPYVPHQEINASTDEVLECVLVRSD 133

Query: 140 GEAVAINLDIEPVEKPENVLWVDPVHRHPDEKK 172
           GEAVAINLDIEP+EKPE VLW+DP+HR P+E +
Sbjct: 134 GEAVAINLDIEPIEKPETVLWIDPIHRDPNESR 166