BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0221.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01047047.1| uroporphyrinogen decarboxylase [Nitrobacter s... 596 e-168 ref|YP_578162.1| uroporphyrinogen decarboxylase [Nitrobacter ham... 592 e-167 ref|ZP_08629083.1| uroporphyrinogen III decarboxylase [Bradyrhiz... 573 e-161 ref|YP_317591.1| uroporphyrinogen decarboxylase [Nitrobacter win... 558 e-157 ref|NP_769039.1| uroporphyrinogen decarboxylase [Bradyrhizobium ... 558 e-157 >ref|ZP_01047047.1| uroporphyrinogen decarboxylase [Nitrobacter sp. Nb-311A] gb|EAQ34952.1| uroporphyrinogen decarboxylase [Nitrobacter sp. Nb-311A] Length = 372 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 283/342 (82%), Positives = 316/342 (92%) Query: 3 QDPTKKPLIDVLSGHRQAVPPLWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEITL 62 QDPT KP ++VLSG RQAVPP+WMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAE+TL Sbjct: 25 QDPTNKPFLEVLSGRRQAVPPIWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEVTL 84 Query: 63 QPIRRFNFDAAIIFSDILVIPYALGRSVRFEAGEGPRLDPLATPGEIATLSTHANFDQLE 122 QP+RRF FDAAIIFSDILVIPYALGR+VRFEAGEGPRLDPL TP +IA LS+ A+ +LE Sbjct: 85 QPVRRFAFDAAIIFSDILVIPYALGRTVRFEAGEGPRLDPLDTPDKIAALSSEADMTKLE 144 Query: 123 PVFEALRRVRRELAPEIALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYRHPDAFAKII 182 PVFEALRRV+REL + ALIGFCGAPWTVATYM+AGQGTPDQAPARM+AYRHPDAFAK+I Sbjct: 145 PVFEALRRVKRELDSKTALIGFCGAPWTVATYMIAGQGTPDQAPARMMAYRHPDAFAKVI 204 Query: 183 DVLVENSIHYLVGQLKAGADCLQIFDTWAGVLPPREFARWAIEPTRRIVAGVRKQVPEAR 242 D +V+NSI YL+GQL+AGAD LQIFDTWAGVLPPREF +W+IEPT+RIVAGVR+QVP+A+ Sbjct: 205 DAIVDNSIRYLLGQLQAGADALQIFDTWAGVLPPREFEQWSIEPTKRIVAGVRRQVPDAK 264 Query: 243 IIGFPRGAGGMLPAYVEQTGVDAVSIDWATEPSMIRERVQNRVAVQGNLDPLALIAGGAA 302 IIGFPRGAG +LP+Y+E TGVDAVSIDWA EPS+IR++VQNRVAVQGNLDPLALIAGGAA Sbjct: 265 IIGFPRGAGALLPSYIEATGVDAVSIDWAAEPSLIRDKVQNRVAVQGNLDPLALIAGGAA 324 Query: 303 LDRAVDDVLENFGKGRMIFNLGHGILPETPIAHVEQMVARVR 344 LDRAVDDVL NF GR+IFNLGHGI PETPI HVEQM+ RVR Sbjct: 325 LDRAVDDVLTNFAAGRLIFNLGHGIQPETPIPHVEQMIRRVR 366 >ref|YP_578162.1| uroporphyrinogen decarboxylase [Nitrobacter hamburgensis X14] sp|Q1QJ95.1|DCUP_NITHX RecName: Full=Uroporphyrinogen decarboxylase; Short=UPD; Short=URO-D gb|ABE63702.1| uroporphyrinogen decarboxylase [Nitrobacter hamburgensis X14] Length = 350 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 288/342 (84%), Positives = 312/342 (91%) Query: 3 QDPTKKPLIDVLSGHRQAVPPLWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEITL 62 QD T KP ++VLSG RQAVPP+WMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAE+TL Sbjct: 3 QDSTIKPFLEVLSGRRQAVPPIWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEVTL 62 Query: 63 QPIRRFNFDAAIIFSDILVIPYALGRSVRFEAGEGPRLDPLATPGEIATLSTHANFDQLE 122 QPIRRF FDAAIIFSDILVIPYALGRSVRFE GEGPRLDPL TP ATLS A+ +LE Sbjct: 63 QPIRRFAFDAAIIFSDILVIPYALGRSVRFEVGEGPRLDPLDTPDMAATLSREADMTKLE 122 Query: 123 PVFEALRRVRRELAPEIALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYRHPDAFAKII 182 PVFEALRRVRREL + ALIGFCGAPWTVATYMVAG+GTPDQAPARM+AYRHP+AFAKII Sbjct: 123 PVFEALRRVRRELDSKTALIGFCGAPWTVATYMVAGRGTPDQAPARMMAYRHPEAFAKII 182 Query: 183 DVLVENSIHYLVGQLKAGADCLQIFDTWAGVLPPREFARWAIEPTRRIVAGVRKQVPEAR 242 DVLVENS+ YL+GQLKAGAD LQIFDTWAGVLPPREFARW+IEPTRRIV GVRK VP+A+ Sbjct: 183 DVLVENSVRYLLGQLKAGADVLQIFDTWAGVLPPREFARWSIEPTRRIVEGVRKIVPDAK 242 Query: 243 IIGFPRGAGGMLPAYVEQTGVDAVSIDWATEPSMIRERVQNRVAVQGNLDPLALIAGGAA 302 IIGFPRGAG +LP+Y+E TGVDAVSIDWA EPS++RE+VQ+RVAVQGNLDPLALIAGGAA Sbjct: 243 IIGFPRGAGALLPSYIEATGVDAVSIDWAAEPSLVREKVQSRVAVQGNLDPLALIAGGAA 302 Query: 303 LDRAVDDVLENFGKGRMIFNLGHGILPETPIAHVEQMVARVR 344 LDRAVDDVL NF GR+IFNLGHGI PETPI HVEQM+ RVR Sbjct: 303 LDRAVDDVLANFAGGRLIFNLGHGIQPETPIPHVEQMIRRVR 344 >ref|ZP_08629083.1| uroporphyrinogen III decarboxylase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08442.1| uroporphyrinogen III decarboxylase [Bradyrhizobiaceae bacterium SG-6C] Length = 364 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/341 (81%), Positives = 302/341 (88%) Query: 8 KPLIDVLSGHRQAVPPLWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEITLQPIRR 67 KP ++VLSG RQAVPP+WMMRQAGRYLPEYRELRAKAG FLDLCF PE+AAE+TLQPIRR Sbjct: 24 KPFLEVLSGSRQAVPPVWMMRQAGRYLPEYRELRAKAGSFLDLCFNPEWAAEVTLQPIRR 83 Query: 68 FNFDAAIIFSDILVIPYALGRSVRFEAGEGPRLDPLATPGEIATLSTHANFDQLEPVFEA 127 F FDAAIIFSDILVIP+ALGRSVRFEAGEGPRLDPL TP +I TL+ A+F +LEPV+EA Sbjct: 84 FGFDAAIIFSDILVIPHALGRSVRFEAGEGPRLDPLDTPEKINTLTGAADFTKLEPVYEA 143 Query: 128 LRRVRRELAPEIALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYRHPDAFAKIIDVLVE 187 LRRVR L P+IALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYR PDAFAKIIDVLVE Sbjct: 144 LRRVRSALDPKIALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYRAPDAFAKIIDVLVE 203 Query: 188 NSIHYLVGQLKAGADCLQIFDTWAGVLPPREFARWAIEPTRRIVAGVRKQVPEARIIGFP 247 NSI YL+ QLKAGAD LQIFDTWAGVLPPREF RW++EPTRRIV GVR + P A+IIGFP Sbjct: 204 NSIQYLLEQLKAGADALQIFDTWAGVLPPREFQRWSVEPTRRIVEGVRAKAPHAKIIGFP 263 Query: 248 RGAGGMLPAYVEQTGVDAVSIDWATEPSMIRERVQNRVAVQGNLDPLALIAGGAALDRAV 307 RGAG LP+YVE T VD VSIDW +PS+IRERVQNRVAVQGNLDPLALIAGG ALDRA+ Sbjct: 264 RGAGAQLPSYVEATAVDGVSIDWTADPSLIRERVQNRVAVQGNLDPLALIAGGGALDRAI 323 Query: 308 DDVLENFGKGRMIFNLGHGILPETPIAHVEQMVARVRAYKG 348 DD L N+ GR IFNLGHGI PETPIAHVEQM+ RVRAYK Sbjct: 324 DDALTNYAGGRYIFNLGHGIQPETPIAHVEQMLRRVRAYKS 364 >ref|YP_317591.1| uroporphyrinogen decarboxylase [Nitrobacter winogradskyi Nb-255] gb|ABA04239.1| uroporphyrinogen decarboxylase [Nitrobacter winogradskyi Nb-255] Length = 325 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 269/319 (84%), Positives = 296/319 (92%) Query: 26 MMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEITLQPIRRFNFDAAIIFSDILVIPYA 85 MMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAE+TLQPIRRF FDAAIIFSDILVIPYA Sbjct: 1 MMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEVTLQPIRRFGFDAAIIFSDILVIPYA 60 Query: 86 LGRSVRFEAGEGPRLDPLATPGEIATLSTHANFDQLEPVFEALRRVRRELAPEIALIGFC 145 LGRSVRFEAGEGPRLDPL TP +IA LS+ A+ +LEPVFEALRRV+ EL P+ ALIGFC Sbjct: 61 LGRSVRFEAGEGPRLDPLDTPDKIAALSSEADMTKLEPVFEALRRVKSELDPKTALIGFC 120 Query: 146 GAPWTVATYMVAGQGTPDQAPARMLAYRHPDAFAKIIDVLVENSIHYLVGQLKAGADCLQ 205 GAPWTVATYMVAGQGTPDQAPARM+AYRHPDAFAK+ID +V+NSI YL+GQLKAGAD LQ Sbjct: 121 GAPWTVATYMVAGQGTPDQAPARMMAYRHPDAFAKVIDAIVDNSIRYLLGQLKAGADALQ 180 Query: 206 IFDTWAGVLPPREFARWAIEPTRRIVAGVRKQVPEARIIGFPRGAGGMLPAYVEQTGVDA 265 IFDTWAGVLPPREFA+W+IEPT+RIVAGVR+QVP+A+IIGFPRGAG +LP+Y+E TGVDA Sbjct: 181 IFDTWAGVLPPREFAQWSIEPTKRIVAGVRRQVPDAKIIGFPRGAGALLPSYIEATGVDA 240 Query: 266 VSIDWATEPSMIRERVQNRVAVQGNLDPLALIAGGAALDRAVDDVLENFGKGRMIFNLGH 325 VSIDWA EP +IR++VQNRVAVQGNLDPLALIAGGAAL+RAVDDVL NF GR+IFNLGH Sbjct: 241 VSIDWAAEPFLIRDKVQNRVAVQGNLDPLALIAGGAALNRAVDDVLTNFAGGRLIFNLGH 300 Query: 326 GILPETPIAHVEQMVARVR 344 GI PETPI HVEQM+ RVR Sbjct: 301 GIQPETPIPHVEQMIRRVR 319 >ref|NP_769039.1| uroporphyrinogen decarboxylase [Bradyrhizobium japonicum USDA 110] sp|Q89SK1.1|DCUP_BRAJA RecName: Full=Uroporphyrinogen decarboxylase; Short=UPD; Short=URO-D dbj|BAC47664.1| uroporphyrinogen decarboxylase [Bradyrhizobium japonicum USDA 110] Length = 344 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/344 (78%), Positives = 300/344 (87%), Gaps = 1/344 (0%) Query: 1 VPQDPTKKPLIDVLSGHRQAVPPLWMMRQAGRYLPEYRELRAKAGGFLDLCFTPEFAAEI 60 +PQ TK P IDVLSG RQA+PP+WMMRQAGRYLPEYRE+RAKAGGFLDLCF PE AAE+ Sbjct: 1 MPQSATK-PFIDVLSGQRQAIPPMWMMRQAGRYLPEYREVRAKAGGFLDLCFNPELAAEV 59 Query: 61 TLQPIRRFNFDAAIIFSDILVIPYALGRSVRFEAGEGPRLDPLATPGEIATLSTHANFDQ 120 TLQPIRRF FDAAIIFSDILVIPYALGRSVRFE GEGPRL+PL P ++ATL+ A+F + Sbjct: 60 TLQPIRRFGFDAAIIFSDILVIPYALGRSVRFEVGEGPRLEPLDDPAKVATLAPRADFGK 119 Query: 121 LEPVFEALRRVRRELAPEIALIGFCGAPWTVATYMVAGQGTPDQAPARMLAYRHPDAFAK 180 L PVF+AL+ VR L P+ ALIGFCGAPWTVATYMVAG GTPDQAPARM+AYRHPDAFAK Sbjct: 120 LAPVFDALKIVRGALDPKTALIGFCGAPWTVATYMVAGHGTPDQAPARMMAYRHPDAFAK 179 Query: 181 IIDVLVENSIHYLVGQLKAGADCLQIFDTWAGVLPPREFARWAIEPTRRIVAGVRKQVPE 240 IIDVLV+NSI YL+ QL AGA+ LQIFDTWAGVLPP EFARW++EPTRRIV GVR +VP+ Sbjct: 180 IIDVLVDNSIEYLLAQLAAGANALQIFDTWAGVLPPAEFARWSVEPTRRIVEGVRAKVPD 239 Query: 241 ARIIGFPRGAGGMLPAYVEQTGVDAVSIDWATEPSMIRERVQNRVAVQGNLDPLALIAGG 300 A+IIGFPRGAG LP YVE TGV+ VSIDW EP+ IRERVQ+RVAVQGNLDPL LI GG Sbjct: 240 AKIIGFPRGAGAQLPGYVEATGVNGVSIDWTAEPAFIRERVQSRVAVQGNLDPLVLITGG 299 Query: 301 AALDRAVDDVLENFGKGRMIFNLGHGILPETPIAHVEQMVARVR 344 AALDRAVD+VL NF +GR IFNLGHGI PETPIAHVEQM+ RVR Sbjct: 300 AALDRAVDNVLANFAQGRFIFNLGHGIQPETPIAHVEQMLKRVR 343