BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0220.p (537 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203981.1| choline dehydrogenase [Bradyrhizobium sp. OR... 944 0.0 ref|YP_001238278.1| choline dehydrogenase, a flavoprotein [Brady... 937 0.0 ref|NP_769037.1| GMC type oxidoreductase [Bradyrhizobium japonic... 898 0.0 ref|ZP_08734169.1| GMC family oxidoreductase [Vibrio nigripulchr... 624 e-177 ref|YP_004156699.1| choline dehydrogenase [Variovorax paradoxus ... 610 e-172 >ref|YP_001203981.1| choline dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL75744.1| choline dehydrogenase, a flavoprotein; alcohol dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 541 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/529 (84%), Positives = 488/529 (92%) Query: 9 EYDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM 68 E+DY++VGAGSAGCVLANRLS+DG+H+VLLLEAGPKD+NIWIHVPLGYGKLFKEK+VNWM Sbjct: 13 EFDYVVVGAGSAGCVLANRLSSDGRHTVLLLEAGPKDTNIWIHVPLGYGKLFKEKTVNWM 72 Query: 69 YQTEPEPGLNGRQVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNAGWGYDDVLPY 128 YQTEPEPGL+GR VFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGN GWGYDDVLPY Sbjct: 73 YQTEPEPGLDGRSVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNVGWGYDDVLPY 132 Query: 129 FRKAEDQQRGSNTYHGAGGPLPVSDWRHHDPLSEAFVHAAAEVGIPTNPDFNGATQEGAG 188 F++AE+Q RG++ YHG GGPLPVSDWRH DPLSEAFV AA E G+P N DFNGA+QEGAG Sbjct: 133 FKRAENQSRGADDYHGTGGPLPVSDWRHEDPLSEAFVKAAVETGLPFNGDFNGASQEGAG 192 Query: 189 FFQTTTRRGRRASTARSYLRPALTRGNLHVETSALAQRILFDGKRASGVAYKQDGQLRKA 248 FFQTTTRRGRRAS+A SYLRPAL R NLHVET ALAQRILF+G+RA GV + Q G+LR A Sbjct: 193 FFQTTTRRGRRASSAVSYLRPALGRSNLHVETDALAQRILFEGRRACGVTFSQRGRLRTA 252 Query: 249 KARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDMVLDAPGVGNDLQDHMQVRIVTRC 308 +ARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGID+VLDAPGVG DLQDH+QVRIV RC Sbjct: 253 RARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDVVLDAPGVGADLQDHLQVRIVMRC 312 Query: 309 AQTVTLNDVINHPVRRVMAGLRYAALRKGPLTIAAGTSGAFFKTSPRLASPDIQIHFLPF 368 +Q +TLND++NHPVR+VMAG RYAA RKGPLTIAAGT+GAFFKT PRLASPDIQIHF+PF Sbjct: 313 SQRITLNDIVNHPVRKVMAGARYAAFRKGPLTIAAGTAGAFFKTDPRLASPDIQIHFIPF 372 Query: 369 STDKMGEKLHPFSGFTASVCQLRPESRGSLKIRSADPGVPPEIRINYLATETDRRAFIDG 428 STDKMGEKLH FSGFTASVCQLRPESRGSL+IRSADP VPPEIRINYLA+ETDRRA IDG Sbjct: 373 STDKMGEKLHTFSGFTASVCQLRPESRGSLRIRSADPAVPPEIRINYLASETDRRANIDG 432 Query: 429 IRILRKILAAPALKSYSVGEVDPGAKVVSDDDLLDFCRRTGSTVYHPTSTCRMGNDPLAV 488 +RILRKILAAPALK Y E PG KVVSDDD+L +CR+TGST+YHPTSTCRMG D LAV Sbjct: 433 LRILRKILAAPALKPYVSDEAYPGGKVVSDDDILAYCRQTGSTIYHPTSTCRMGTDALAV 492 Query: 489 VDQRLKVRGIEGLRVVDASVMPDLMSGNTNAPTIMIAEKASDMILEDAR 537 VD+RL+VRGI GLRVVDAS+MPDL+SGNTNAP IMIAEKASDMIL+DAR Sbjct: 493 VDERLRVRGIGGLRVVDASIMPDLVSGNTNAPVIMIAEKASDMILQDAR 541 >ref|YP_001238278.1| choline dehydrogenase, a flavoprotein [Bradyrhizobium sp. BTAi1] gb|ABQ34372.1| choline dehydrogenase, a flavoprotein [Bradyrhizobium sp. BTAi1] Length = 541 Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/529 (83%), Positives = 487/529 (92%) Query: 9 EYDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM 68 E+DYI+VGAGSAGCVLANRLS DGKH+VLLLEAGPKD+NIWIHVPLGYGKLFK+K+VNWM Sbjct: 13 EFDYIVVGAGSAGCVLANRLSKDGKHTVLLLEAGPKDTNIWIHVPLGYGKLFKDKTVNWM 72 Query: 69 YQTEPEPGLNGRQVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNAGWGYDDVLPY 128 YQTEPEPGL GR VFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGN GWGYDDVLPY Sbjct: 73 YQTEPEPGLGGRSVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNVGWGYDDVLPY 132 Query: 129 FRKAEDQQRGSNTYHGAGGPLPVSDWRHHDPLSEAFVHAAAEVGIPTNPDFNGATQEGAG 188 F++AE+Q RG++ YHG GGPLPVSDWRH DPLSEAFV AA E G+P N DFNGA+QEGAG Sbjct: 133 FKRAENQSRGADDYHGVGGPLPVSDWRHEDPLSEAFVKAAGETGLPFNADFNGASQEGAG 192 Query: 189 FFQTTTRRGRRASTARSYLRPALTRGNLHVETSALAQRILFDGKRASGVAYKQDGQLRKA 248 FFQTTTR GRRAS+A SYLRPAL R NLHVET ALAQRILFDG+RASGV + Q G+LR A Sbjct: 193 FFQTTTRHGRRASSAVSYLRPALGRSNLHVETDALAQRILFDGRRASGVTFSQRGRLRTA 252 Query: 249 KARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDMVLDAPGVGNDLQDHMQVRIVTRC 308 +AR+E+LVSSGAYNSPQLLQLSGVGPADLLKQHGID+VLDAPGVG+DLQDH+QVRIV RC Sbjct: 253 RARREILVSSGAYNSPQLLQLSGVGPADLLKQHGIDVVLDAPGVGSDLQDHLQVRIVMRC 312 Query: 309 AQTVTLNDVINHPVRRVMAGLRYAALRKGPLTIAAGTSGAFFKTSPRLASPDIQIHFLPF 368 +Q +TLND++N+PVR+++AG RYAA RKGPLTIAAGT+GAFFKT PRLASPDIQIHF+PF Sbjct: 313 SQRITLNDIVNNPVRKLLAGARYAAFRKGPLTIAAGTAGAFFKTDPRLASPDIQIHFIPF 372 Query: 369 STDKMGEKLHPFSGFTASVCQLRPESRGSLKIRSADPGVPPEIRINYLATETDRRAFIDG 428 STDKMGEKLH FSGFTASVCQLRPESRGSL+IRSADP PEIRINYLA+ETDRRA IDG Sbjct: 373 STDKMGEKLHAFSGFTASVCQLRPESRGSLRIRSADPAAAPEIRINYLASETDRRANIDG 432 Query: 429 IRILRKILAAPALKSYSVGEVDPGAKVVSDDDLLDFCRRTGSTVYHPTSTCRMGNDPLAV 488 IRILRKILAAPALK Y E PG+K+VSDDD+L +CR+TGST+YHPTSTCRMG D LAV Sbjct: 433 IRILRKILAAPALKPYVSDEAYPGSKIVSDDDILAYCRQTGSTIYHPTSTCRMGTDDLAV 492 Query: 489 VDQRLKVRGIEGLRVVDASVMPDLMSGNTNAPTIMIAEKASDMILEDAR 537 VDQRL+VRGI+GLRVVDAS+MPDL+SGNTNAP IMIAEKASDMIL+DAR Sbjct: 493 VDQRLRVRGIDGLRVVDASIMPDLVSGNTNAPVIMIAEKASDMILQDAR 541 >ref|NP_769037.1| GMC type oxidoreductase [Bradyrhizobium japonicum USDA 110] dbj|BAC47662.1| GMC type oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 541 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/529 (79%), Positives = 471/529 (89%) Query: 9 EYDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM 68 E+DYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM Sbjct: 13 EFDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM 72 Query: 69 YQTEPEPGLNGRQVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNAGWGYDDVLPY 128 YQTEPEP L GRQVFQPRGK LGGSSSINGLLYVRGQHEDYDRWRQRGN GWGYDDVLPY Sbjct: 73 YQTEPEPELKGRQVFQPRGKTLGGSSSINGLLYVRGQHEDYDRWRQRGNTGWGYDDVLPY 132 Query: 129 FRKAEDQQRGSNTYHGAGGPLPVSDWRHHDPLSEAFVHAAAEVGIPTNPDFNGATQEGAG 188 F+KAE Q RG++ YHG+ GPLPVS+ DPLS+AF+ AA E G+P NPDFNGATQEG G Sbjct: 133 FKKAESQSRGADQYHGSDGPLPVSNMTVTDPLSKAFIDAAVETGLPYNPDFNGATQEGVG 192 Query: 189 FFQTTTRRGRRASTARSYLRPALTRGNLHVETSALAQRILFDGKRASGVAYKQDGQLRKA 248 FQTTTR GRRAST+ +YL PA TRGNL +ET AL QR+LF+G+RA GV Y+Q +R+A Sbjct: 193 LFQTTTRNGRRASTSVAYLGPAKTRGNLRIETEALGQRVLFEGRRAVGVEYRQGATVRRA 252 Query: 249 KARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDMVLDAPGVGNDLQDHMQVRIVTRC 308 +ARKE+++SSGAYNSPQLLQLSGVGP DLL++HGID+VLDA GVG+DLQDHMQVRIV RC Sbjct: 253 RARKEIVLSSGAYNSPQLLQLSGVGPGDLLRKHGIDVVLDAQGVGHDLQDHMQVRIVMRC 312 Query: 309 AQTVTLNDVINHPVRRVMAGLRYAALRKGPLTIAAGTSGAFFKTSPRLASPDIQIHFLPF 368 +Q +TLND +NHP+RR +AG RYA RKG LTIAAGT+GAFFKTSPRLASPDIQ+HFLPF Sbjct: 313 SQKITLNDTVNHPLRRTLAGARYALFRKGWLTIAAGTAGAFFKTSPRLASPDIQVHFLPF 372 Query: 369 STDKMGEKLHPFSGFTASVCQLRPESRGSLKIRSADPGVPPEIRINYLATETDRRAFIDG 428 STDKMGEKLH FSGFTASVCQLRPESRG+L+IRSADP VPPEIRINY++TETDR ++ Sbjct: 373 STDKMGEKLHDFSGFTASVCQLRPESRGTLRIRSADPTVPPEIRINYMSTETDRTTNVEA 432 Query: 429 IRILRKILAAPALKSYSVGEVDPGAKVVSDDDLLDFCRRTGSTVYHPTSTCRMGNDPLAV 488 ++ILRKIL APALK + + E DPGAKV +D +LLD+CR GST+YHPTSTCRMGND LAV Sbjct: 433 LKILRKILNAPALKPFVINEYDPGAKVSTDGELLDYCRERGSTIYHPTSTCRMGNDALAV 492 Query: 489 VDQRLKVRGIEGLRVVDASVMPDLMSGNTNAPTIMIAEKASDMILEDAR 537 VDQRLKVRG+EGLRVVD SVMPDL+SGNTNAP IMIAEKASDMILEDAR Sbjct: 493 VDQRLKVRGLEGLRVVDGSVMPDLVSGNTNAPIIMIAEKASDMILEDAR 541 >ref|ZP_08734169.1| GMC family oxidoreductase [Vibrio nigripulchritudo ATCC 27043] gb|EGU56669.1| GMC family oxidoreductase [Vibrio nigripulchritudo ATCC 27043] Length = 535 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 294/532 (55%), Positives = 386/532 (72%), Gaps = 1/532 (0%) Query: 4 SNDAAEYDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEK 63 S A++DYI+VGAGSAGCVLANRLSA+ K+ VLLLEAG DSN W+H+P+GY K Sbjct: 2 STSEAQFDYIVVGAGSAGCVLANRLSANPKNKVLLLEAGGNDSNPWLHIPVGYFKTMHNP 61 Query: 64 SVNWMYQTEPEPGLNGRQVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNAGWGYD 123 +W Y T P+ G+N RQ+ PRGKV+GGSS++NGLLYVRGQ EDYDRW + GN GW Y Sbjct: 62 KTDWCYLTAPDKGINHRQLQWPRGKVIGGSSALNGLLYVRGQAEDYDRWEKLGNKGWSYQ 121 Query: 124 DVLPYFRKAEDQQRGSNTYHGAGGPLPVSDWRHHDPLSEAFVHAAAEVGIPTNPDFNGAT 183 +VLPYF+K+EDQ+RG + +HG GGPL VSD R P+++ F+ AA + GIP NPD+NG + Sbjct: 122 EVLPYFKKSEDQERGKSEFHGVGGPLKVSDLRLRRPIADFFIQAAVQAGIPENPDYNGTS 181 Query: 184 QEGAGFFQTTTRRGRRASTARSYLRPALTRGNLHVETSALAQRILFDGKRASGVAYKQDG 243 QEG G+FQ T +G R STA+ +L+P L+R NL V A RILF+GK A G+ Y+Q Sbjct: 182 QEGVGYFQQTAYKGFRWSTAKGFLKPVLSRPNLTVALHAQVHRILFEGKTAIGIEYQQKQ 241 Query: 244 QLRKAKARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDMVLDAPGVGNDLQDHMQVR 303 KA KEV++SSGA SPQ+LQLSG+G DL+ Q I ++ PGVG +LQDH+Q+R Sbjct: 242 SKVITKASKEVILSSGAIGSPQILQLSGIGDRDLMDQLNIPLIHALPGVGQNLQDHLQIR 301 Query: 304 IVTRCAQTVTLNDVINHPVRRVMAGLRYAALRKGPLTIAAGTSGAFFKTSPRLASPDIQI 363 +V + +Q TLND +N +R+ G++YA R GPLT+AA F +++ L+ PDIQ Sbjct: 302 LVFKTSQR-TLNDEVNSVFKRLWVGMQYAFNRTGPLTLAASQVAVFTQSNESLSRPDIQF 360 Query: 364 HFLPFSTDKMGEKLHPFSGFTASVCQLRPESRGSLKIRSADPGVPPEIRINYLATETDRR 423 H P S DK GE HPFS FT+SVCQLRP SRG ++I+S+DP PEI+ NYL+ E D + Sbjct: 361 HMQPLSADKPGEGAHPFSAFTSSVCQLRPYSRGYVQIKSSDPAEHPEIQPNYLSDERDEK 420 Query: 424 AFIDGIRILRKILAAPALKSYSVGEVDPGAKVVSDDDLLDFCRRTGSTVYHPTSTCRMGN 483 +D I++ RKI A PAL + + E PG++ +D++LL+ R T+YHPTSTC+MGN Sbjct: 421 TVVDAIKVARKISAQPALAKHILEEFVPGSQYQTDEELLEAARNFSQTIYHPTSTCKMGN 480 Query: 484 DPLAVVDQRLKVRGIEGLRVVDASVMPDLMSGNTNAPTIMIAEKASDMILED 535 D +AVVD+RL+V G++ LRV DAS+MP+++SGNTNAPTIMIAEKA+DMILED Sbjct: 481 DDMAVVDERLRVHGVKQLRVADASIMPEIVSGNTNAPTIMIAEKAADMILED 532 >ref|YP_004156699.1| choline dehydrogenase [Variovorax paradoxus EPS] gb|ADU38588.1| Choline dehydrogenase [Variovorax paradoxus EPS] Length = 541 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 293/535 (54%), Positives = 377/535 (70%), Gaps = 6/535 (1%) Query: 9 EYDYIIVGAGSAGCVLANRLSADGKHSVLLLEAGPKDSNIWIHVPLGYGKLFKEKSVNWM 68 E+DYI+VGAGSAGCVLA RLS D VLLLEAGP+D ++WIH+P+GYGK + NW Sbjct: 5 EFDYIVVGAGSAGCVLAGRLSEDPATRVLLLEAGPRDRSLWIHLPIGYGKTMWSPTYNWR 64 Query: 69 YQTEPEPGLNGRQVFQPRGKVLGGSSSINGLLYVRGQHEDYDRWRQRGNAGWGYDDVLPY 128 ++T+P+P +NGR+++ PRGK LGGSS+INGL+Y+RGQ EDYD W GNAGWGYDDVLPY Sbjct: 65 FETDPDPNMNGRRIYWPRGKTLGGSSAINGLIYIRGQREDYDHWAALGNAGWGYDDVLPY 124 Query: 129 FRKAEDQQRGSNTYHGAGGPLPVSDWRHHDPLSEAFVHAAAEVGIPTNPDFNGATQEGAG 188 F K+E QRG + +HG GPL VSD L EAF+ A + G+P DFNGA QEGAG Sbjct: 125 FIKSEGNQRGGDAFHGGDGPLKVSDIAAKHELIEAFIDGARQTGVPRTEDFNGAAQEGAG 184 Query: 189 FFQTTTRRGRRASTARSYLRPALTRGNLHVETSALAQRILFDGKRASGVAYKQDGQLRKA 248 ++Q TT +G R STA++YL PA R NL +ET ALA +++F+G+RA G+ Y+Q G+L+ A Sbjct: 185 YYQLTTYKGWRCSTAKAYLTPAKHRPNLRIETEALASKLVFEGRRAVGITYRQGGELKTA 244 Query: 249 KARKEVLVSSGAYNSPQLLQLSGVGPADLLKQHGIDMVLDAPGVGNDLQDHMQVRIVTRC 308 + R EVL+S+G+ SPQLLQLSG+GP LL + G+ +V D GVG +LQDH+Q+R+ C Sbjct: 245 RCRAEVLLSAGSIQSPQLLQLSGIGPRALLDRLGVPVVHDLAGVGENLQDHLQIRLGYEC 304 Query: 309 AQTVTLNDVINHPVRRVMAGLRYAALRKGPLTIAAGTSGAFFKT------SPRLASPDIQ 362 + +T ND +N ++ G+ + R GPL + G F + P A+PDIQ Sbjct: 305 TKPITTNDQLNAWSGQIGMGMEWLMHRTGPLAVGINQGGCFMRALKDEHGQPVAATPDIQ 364 Query: 363 IHFLPFSTDKMGEKLHPFSGFTASVCQLRPESRGSLKIRSADPGVPPEIRINYLATETDR 422 H S D G K+HP+SGFT SVCQLRPESRG + IRS D PPE++ NYLATE DR Sbjct: 365 FHVATLSADMAGGKVHPYSGFTMSVCQLRPESRGHIHIRSLDAAEPPEMQPNYLATELDR 424 Query: 423 RAFIDGIRILRKILAAPALKSYSVGEVDPGAKVVSDDDLLDFCRRTGSTVYHPTSTCRMG 482 + G++ R I APA++ Y EV PG SD+DLL+FCR G+T++HPT TCRMG Sbjct: 425 ATTVAGVKAARAIADAPAMRPYVKREVKPGPTAASDEDLLEFCRNNGATIFHPTGTCRMG 484 Query: 483 NDPLAVVDQRLKVRGIEGLRVVDASVMPDLMSGNTNAPTIMIAEKASDMILEDAR 537 +D LAVVD RL+V GI GLRV+D S MP L+SGNTNAP +M+AEKA DMI EDA+ Sbjct: 485 SDALAVVDARLRVHGIAGLRVIDCSAMPTLVSGNTNAPAVMMAEKAVDMIREDAK 539