BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0217.p (653 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769034.1| hypothetical protein bll2394 [Bradyrhizobium ja... 1034 0.0 ref|NP_085734.1| hypothetical protein mlr9186 [Mesorhizobium lot... 630 e-178 ref|ZP_08071156.1| diguanylate cyclase/phosphodiesterase [Methyl... 495 e-137 ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PA... 433 e-119 ref|ZP_08071601.1| diguanylate cyclase/phosphodiesterase [Methyl... 430 e-118 >ref|NP_769034.1| hypothetical protein bll2394 [Bradyrhizobium japonicum USDA 110] dbj|BAC47659.1| bll2394 [Bradyrhizobium japonicum USDA 110] Length = 653 Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/653 (76%), Positives = 567/653 (86%) Query: 1 MRTHLRSYFATLFAGDLAAFGAPPADEALAGHIRAEQVSLVLGYSFGIMLANACNALVLA 60 MRT L +YFA LFAGDL+AFG P DEALAGHIRAEQ+SLVLGYS GIMLANACNA VLA Sbjct: 1 MRTQLTTYFARLFAGDLSAFGGPATDEALAGHIRAEQMSLVLGYSVGIMLANACNAAVLA 60 Query: 61 IALWQSPDWAFALVWAAAVGSAALFFGLQARAARRIAKPQFVSRRTMYRLVRNALALGTA 120 IALWQSPD AFAL+WA V AA+ FG+Q+ A+RRI KPQFVSRR ++RLVRNA LG Sbjct: 61 IALWQSPDRAFALIWAVTVAGAAIAFGVQSHASRRITKPQFVSRRAVHRLVRNAFVLGAV 120 Query: 121 WGVVPVAFFANASSGAQLVITCLCAGMLAGGAFAFSTIPIAAIAFTAPIFVGTAICLGRD 180 WG+VPVAFFA+A +G +LVITCLC+GMLAGGAFAF+TIPIAAIAFTAP+F+G AICLGR Sbjct: 121 WGIVPVAFFADADTGGKLVITCLCSGMLAGGAFAFATIPIAAIAFTAPLFLGIAICLGRS 180 Query: 181 GDFVYLLMAVLVLVYGSVLLRGVFVNAFEFRRRIIAQHEAERTVRQDPLTHLPNRVAFNE 240 D YLL+A+LV VYG+VLLR VFVN+F F RR+I Q EAERTVRQDPLTHLPNR AFNE Sbjct: 181 NDVAYLLIAILVAVYGTVLLRAVFVNSFSFARRVIRQVEAERTVRQDPLTHLPNRFAFNE 240 Query: 241 ALNGALNRLARSGEEFAVLLLDLDRFKEVNDRFGHPAGDEFLVQVAARLQRCTRAAEHVA 300 L+ AL RLA SGEEFAVLLLDLDRFKEVND+FGHPAGDEFLVQVA+RLQRCTRAAEHVA Sbjct: 241 TLDAALKRLALSGEEFAVLLLDLDRFKEVNDKFGHPAGDEFLVQVASRLQRCTRAAEHVA 300 Query: 301 RIGGDEFALIMSNLTRPEDALAIAERFVAAFAEPFPIDGLEVNRTISIGIVLAPRDGSTS 360 RIGGDEFAL+M+NL RPEDAL IAERFVA+FAEPFPI+G ++ S+GIVLAPRDG+T+ Sbjct: 301 RIGGDEFALVMANLARPEDALEIAERFVASFAEPFPIEGRQIVGATSVGIVLAPRDGNTA 360 Query: 361 HDLLKHVDIALYRAKKSAPGTICFFEASDDRSARDRRALQRDLEHAIEADELFLVYQPFL 420 D++K+ D ALYRAKK+ PGT+CFFE SDDR +RDR+ALQ DLE AI DELFL +QPFL Sbjct: 361 LDVMKNADAALYRAKKAGPGTVCFFEDSDDRVSRDRKALQSDLEGAIARDELFLAFQPFL 420 Query: 421 DIRKGRVTGFEALLRWQHPTRGLIPPTVFIPIAEESGLIHQLGEWVIRRACTMLSRWPDD 480 D+ + R+TGFEALLRWQHP+RGL+PP+ FIPIAEE+GLIH++GEWVIRRAC L+ WP++ Sbjct: 421 DLAENRITGFEALLRWQHPSRGLVPPSEFIPIAEETGLIHEIGEWVIRRACATLADWPEE 480 Query: 481 IRIAVNFSAVQFQNVGILQTIVDALAEANVAPNRLEIEITESMLISKYGSAPAILHALLE 540 IR+AVNFSA QF N GILQTIV ALA A V+P+RLE+EITESML+SKYGSA +IL+ALL+ Sbjct: 481 IRVAVNFSAAQFHNTGILQTIVQALAHAKVSPSRLEVEITESMLLSKYGSAASILNALLQ 540 Query: 541 LGLTVALDDFGTGFSSLTYLRKLPFSRIKIDQSFIRDMLTQPDCAAIVKSVIGLAQELRI 600 LG+TVALDDFGTGFSSLTYLRKLPFSRIKIDQSFI DML QPDCAAIVKSVI LA++LRI Sbjct: 541 LGVTVALDDFGTGFSSLTYLRKLPFSRIKIDQSFISDMLVQPDCAAIVKSVISLARDLRI 600 Query: 601 GVVAEGVETADQLEYLRQTSCDEVQGYLIGRPMSGSEISALLDHNPQHSVHAA 653 VVAEGVETADQLEYLRQ SCDEVQGYLI RP+S + ALLD + +AA Sbjct: 601 AVVAEGVETADQLEYLRQISCDEVQGYLISRPVSADGVLALLDTKKLVATYAA 653 >ref|NP_085734.1| hypothetical protein mlr9186 [Mesorhizobium loti MAFF303099] dbj|BAB54575.1| mlr9186 [Mesorhizobium loti MAFF303099] Length = 653 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 329/630 (52%), Positives = 433/630 (68%) Query: 12 LFAGDLAAFGAPPADEALAGHIRAEQVSLVLGYSFGIMLANACNALVLAIALWQSPDWAF 71 L AGDL FG P E LAG IRAEQVS+VL + M+AN NA+ +A+W SPD Sbjct: 13 LLAGDLRVFGGPSTIEPLAGRIRAEQVSIVLRNTPLGMVANILNAVTFVMAVWGSPDQTK 72 Query: 72 ALVWAAAVGSAALFFGLQARAARRIAKPQFVSRRTMYRLVRNALALGTAWGVVPVAFFAN 131 A++WA+ + AA F GL+AR++ + KP+ VSRRT LVRNA GT WG +PV FF Sbjct: 73 AILWASVIIGAAGFVGLRARSSFQSVKPRSVSRRTTQNLVRNAFLFGTWWGALPVLFFGA 132 Query: 132 ASSGAQLVITCLCAGMLAGGAFAFSTIPIAAIAFTAPIFVGTAICLGRDGDFVYLLMAVL 191 A++ AQ+VITCL AGM+AGGA +F TIPIAAIA+T PIFVG+A+ + V L +A+L Sbjct: 133 ATNAAQVVITCLSAGMIAGGAASFYTIPIAAIAYTLPIFVGSAVAIVWMEGAVNLPVAIL 192 Query: 192 VLVYGSVLLRGVFVNAFEFRRRIIAQHEAERTVRQDPLTHLPNRVAFNEALNGALNRLAR 251 ++ Y L R V +A EF + I Q E+E +R+D LT LPNR +FNE L AL + Sbjct: 193 IVSYAITLFRAVLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFNERLENALVDARQ 252 Query: 252 SGEEFAVLLLDLDRFKEVNDRFGHPAGDEFLVQVAARLQRCTRAAEHVARIGGDEFALIM 311 + FA+LL DL F EV+D FG D LV++AARL++ TR ++ +AR+ G EFA+I Sbjct: 253 FDQHFALLLFDLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGIARLEGGEFAIIA 312 Query: 312 SNLTRPEDALAIAERFVAAFAEPFPIDGLEVNRTISIGIVLAPRDGSTSHDLLKHVDIAL 371 + RP+ ++A++ + PF I+G E+ S+GI LAP DG ++ LL+ VD AL Sbjct: 313 ARDIRPDQIGSLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLDANQLLRCVDTAL 372 Query: 372 YRAKKSAPGTICFFEASDDRSARDRRALQRDLEHAIEADELFLVYQPFLDIRKGRVTGFE 431 +RAK G+I FF ASDD +A R AL+RDL A+ DEL+L +QPFLD+ R+ GFE Sbjct: 373 HRAKTLGAGSIQFFSASDDDAAARRNALERDLASALANDELWLAFQPFLDLGSERIRGFE 432 Query: 432 ALLRWQHPTRGLIPPTVFIPIAEESGLIHQLGEWVIRRACTMLSRWPDDIRIAVNFSAVQ 491 ALLRWQHPT G IPP+ FIPIAEE+ LIH +G W ++ AC WP D+R++VN SAVQ Sbjct: 433 ALLRWQHPTLGAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPRDLRVSVNLSAVQ 492 Query: 492 FQNVGILQTIVDALAEANVAPNRLEIEITESMLISKYGSAPAILHALLELGLTVALDDFG 551 ++ +L IV AL+E + P RLE+EITES+LIS + A ++L +L L +TVALDDFG Sbjct: 493 LKDKALLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLSFLSVTVALDDFG 552 Query: 552 TGFSSLTYLRKLPFSRIKIDQSFIRDMLTQPDCAAIVKSVIGLAQELRIGVVAEGVETAD 611 TGFSSLTYLRKLP SR+KID+SF++DML DCAAIV+S++ LA ELRI V AEGVET + Sbjct: 553 TGFSSLTYLRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELRIEVTAEGVETPE 612 Query: 612 QLEYLRQTSCDEVQGYLIGRPMSGSEISAL 641 QL+YLR+ CDE QGYLIG+P+ +I + Sbjct: 613 QLDYLRRVGCDEAQGYLIGKPVRIDDIPGI 642 >ref|ZP_08071156.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] gb|EFY01683.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] Length = 659 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 279/625 (44%), Positives = 396/625 (63%), Gaps = 9/625 (1%) Query: 22 APPADEALAGHIRAEQVSLVLGYSFGIMLANACNALVLAIALWQSPDWAFALVWAAA--- 78 A PAD A ++ EQ++ V + G+M AN CNALVL ALW +P A +WA+A Sbjct: 21 AAPADPHAAERLQEEQLAAVWRNTPGMMAANLCNALVLLAALWDTPMAGAATLWASALIA 80 Query: 79 -VGSAALFFGLQARAARRIAKPQFVSRRTMYRLVRNALALGTAWGVVPVAFFANASSGAQ 137 VG L +AR ++ VSRR ++ NAL LG W VP FF +A SG + Sbjct: 81 VVGYIYLRARRRARKRLTTSRLSRVSRRAVF----NALLLGALWAAVPALFFIDADSGGR 136 Query: 138 LVITCLCAGMLAGGAFAFSTIPIAAIAFTAPIFVGTAICLGRDGDFVYLLMAVLVLVYGS 197 L++ L AGML GGAFA +T P+AA+AF +PI + + R GD ++ +A+++ +Y + Sbjct: 137 LMVVSLTAGMLFGGAFALATAPLAALAFISPIVIASEATFLRGGDPDHMRIAIVLAIYVA 196 Query: 198 VLLRGVFVNAFEFRRRIIAQHEAERTVRQDPLTHLPNRVAFNEALNGALNRLARSGEEFA 257 VLLR VFV+A R+R++ +AE+ R D LT LPNR+ F +A+ R++R+G F Sbjct: 197 VLLRTVFVDAENLRKRVLTHMDAEQQARTDALTGLPNRLGFTDAIEREFARMSRTGAGFL 256 Query: 258 VLLLDLDRFKEVNDRFGHPAGDEFLVQVAARLQRCTRAAEHVARIGGDEFALIMSNLTRP 317 +L +DLD FK +NDR GHPAGDE LV A R++ C R + VAR+GGDEFA+I + + Sbjct: 257 LLCVDLDNFKTINDRLGHPAGDELLVAAAERMRACLRGYDVVARLGGDEFAIIANGVDGR 316 Query: 318 EDALAIAERFVAAFAEPFPIDGLEVNRTISIGIVLAPRDGSTSHDLLKHVDIALYRAKKS 377 E+A+A+AER + F E F I+G E+ S+G LAP +G+ +L+K DIALY+AK+ Sbjct: 317 ENAVALAERIILCFDESFLIEGREIYGAASVGGALAPINGADQRELVKSADIALYQAKQR 376 Query: 378 APGTICFFEASDDRSARDRRALQRDLEHAIEADELFLVYQPFLDIRKGRVTGFEALLRWQ 437 G FE++ D +R+ RAL+ DL I +L LV+QP +++ GR+ G EALLRW Sbjct: 377 G-GCWRLFESNHDMESRESRALELDLRRTISLRQLALVFQPIINVATGRIVGCEALLRWN 435 Query: 438 HPTRGLIPPTVFIPIAEESGLIHQLGEWVIRRACTMLSRWPDDIRIAVNFSAVQFQNVGI 497 HPTRG + P++FIP+AE++G I ++G WVI AC + +P D R+A+N S +Q + Sbjct: 436 HPTRGQVAPSLFIPLAEKTGFIDEIGLWVIEEACAAAAHFPPDFRVAINISPLQLRRQEF 495 Query: 498 LQTIVDALAEANVAPNRLEIEITESMLISKYGSAPAILHALLELGLTVALDDFGTGFSSL 557 + +AL P+R+EIEITE+ L++ + A + L GL+++LDDFG G+SSL Sbjct: 496 PDCVFEALTRTQAEPSRIEIEITETALLADDEVSDAAIRKLSGAGLSISLDDFGAGYSSL 555 Query: 558 TYLRKLPFSRIKIDQSFIRDMLTQPDCAAIVKSVIGLAQELRIGVVAEGVETADQLEYLR 617 YLRKLP R+KID+SF+ D+LT+ DCAAIV V +A +L + +VAEGVET QL++LR Sbjct: 556 NYLRKLPLHRVKIDRSFVGDVLTKKDCAAIVTGVTRMAADLDMRIVAEGVETLAQLQWLR 615 Query: 618 QTSCDEVQGYLIGRPMSGSEISALL 642 C E QGYLI RP+ E A L Sbjct: 616 NVGCSEAQGYLISRPLPRQEFLAFL 640 >ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gb|EFI50486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 830 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/442 (48%), Positives = 285/442 (64%) Query: 202 GVFVNAFEFRRRIIAQHEAERTVRQDPLTHLPNRVAFNEALNGALNRLARSGEEFAVLLL 261 G V A + R A+ D LT LPNRV F E L+ AL R S E VL + Sbjct: 373 GFLVTAVDITERRRAEARIAYMAHHDNLTGLPNRVKFREHLDQALERSDGSDERIGVLCI 432 Query: 262 DLDRFKEVNDRFGHPAGDEFLVQVAARLQRCTRAAEHVARIGGDEFALIMSNLTRPEDAL 321 DLD FK VND FGHP GD L VA RL A VAR+GGDEFA+I+ P D Sbjct: 433 DLDMFKNVNDSFGHPVGDRLLKMVAERLHAVIPADSLVARLGGDEFAMIVKRNPMPRDLN 492 Query: 322 AIAERFVAAFAEPFPIDGLEVNRTISIGIVLAPRDGSTSHDLLKHVDIALYRAKKSAPGT 381 ++ +A + P+ +DGLE+ S+GI ++P DG T DLL++ D+ALYRAK G Sbjct: 493 DLSAILIADVSAPYAVDGLELVIGASVGIAMSPGDGVTGDDLLRNADMALYRAKSEGGGA 552 Query: 382 ICFFEASDDRSARDRRALQRDLEHAIEADELFLVYQPFLDIRKGRVTGFEALLRWQHPTR 441 CFFE DR A+ RRAL+ DL HA+ E L YQP +D+ R+ FE+L+RW+HP R Sbjct: 553 HCFFEQEMDRQAQTRRALEFDLRHALANGEFELHYQPLVDVAANRIVAFESLIRWRHPER 612 Query: 442 GLIPPTVFIPIAEESGLIHQLGEWVIRRACTMLSRWPDDIRIAVNFSAVQFQNVGILQTI 501 G++ P FIP+AE+ GLI LGEWV+R ACT ++WP DI++AVN S +QF++ ++QT+ Sbjct: 613 GMVSPAEFIPVAEDIGLIVTLGEWVLREACTEAAKWPADIKVAVNLSPIQFRSRNLVQTV 672 Query: 502 VDALAEANVAPNRLEIEITESMLISKYGSAPAILHALLELGLTVALDDFGTGFSSLTYLR 561 + ALA + +AP RLE+EITES+ +++ + A+LH L LG+ +++DDFGTG+SSL+YLR Sbjct: 673 IAALAHSGLAPTRLELEITESLFLAETEANLAMLHQLRSLGVRISMDDFGTGYSSLSYLR 732 Query: 562 KLPFSRIKIDQSFIRDMLTQPDCAAIVKSVIGLAQELRIGVVAEGVETADQLEYLRQTSC 621 PF +IKID+SF+RD+ + DC AIVK++ GL Q L I AEGVET DQLE LR C Sbjct: 733 SFPFDKIKIDRSFVRDLAEREDCVAIVKAISGLGQSLNISTTAEGVETEDQLERLRAMGC 792 Query: 622 DEVQGYLIGRPMSGSEISALLD 643 EVQG+L G +I+ LLD Sbjct: 793 TEVQGFLFSAAKPGVDIAGLLD 814 >ref|ZP_08071601.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] gb|EFY01113.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] Length = 683 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 250/638 (39%), Positives = 357/638 (55%), Gaps = 14/638 (2%) Query: 12 LFAGDLAAFGAPPADEALAGHIRAEQVSLVLGYSFGIMLANACNALVLAIALWQSPDWAF 71 F GD AF A+ RAEQ+S + + G MLA+ +AL A+++W +P Sbjct: 33 FFEGDPLAFDHRTVSPAVRARFRAEQLSDLEKSTPGAMLASCFSALTFAMSMWATPQADE 92 Query: 72 ALVWAAAVGSAALFFGLQARAARRIAKPQF----VSRRTMYRLVRNALALGTAWGVVPVA 127 A WAA++ F ARR++ PQ S ++R NAL + WG +P+ Sbjct: 93 ARAWAASI-----FILGGVIYARRMSAPQTHRRAASTNGVWRATANALMHASLWGTLPIF 147 Query: 128 FFANASSGAQLVITCLCAGMLAGGAFAFSTIPIAAIAFTAPIFVGTAICLGRDGDFVYLL 187 FFA AS Q +I C C L GG FA S IP++ A PI G + + + ++ + Sbjct: 148 FFAEASPPQQFLIACFCFTTLFGGGFALSMIPVSMFAHIIPIVAGLLVAVVNAHNPIFDV 207 Query: 188 MAVLVLVYGSVLLRGVFVNAFEFRRRIIAQHEAERTVRQDPLTHLPNRVAFNEALNGALN 247 A +V +Y V++ A RR A+ AE +D LT LPNRVAF E L A Sbjct: 208 AAGVVAIYAVVIINAAINRAAMAARRCAAEAAAEEGALRDELTKLPNRVAFREELTRAFA 267 Query: 248 RLARSGEEFAVLLLDLDRFKEVNDRFGHPAGDEFLVQVAARLQRCTRAAEHVARIGGDEF 307 R AR E FA++ DLD FK VND GH GD L++ A R++ TR ++ +AR+GGDEF Sbjct: 268 RHARVNERFALMCFDLDGFKSVNDSMGHETGDAVLIEAARRVRVSTRESDLIARLGGDEF 327 Query: 308 ALIMSNLTRPEDALAIAERFVAAFAEPFPIDGLEVNRTISIGIVLAPRDGSTSHDLLKHV 367 ALI ++ EDA++IAER + AF PF + G + ++SIG+ +AP DG LL++ Sbjct: 328 ALIAVDIRSVEDAVSIAERILNAFRAPFEVGGRSFSISVSIGVAIAPSDGVDPESLLRNA 387 Query: 368 DIALYRAKKSAPGTICFFEASDDRSA--RDRRALQRDLEHAIEADELFLVYQPFLDIRKG 425 D A+Y K++ C + DR +R L +L+ A ELF+V+QPF+D Sbjct: 388 DNAMYATKQAGR---CGYTLFRDRFGFVAERNTLDAELDRAFAKKELFMVFQPFVDTETL 444 Query: 426 RVTGFEALLRWQHPTRGLIPPTVFIPIAEESGLIHQLGEWVIRRACTMLSRWPDDIRIAV 485 TGFEALLRW+HP RG++ IP+ E +G I +G W + + + + WPD +R+AV Sbjct: 445 ETTGFEALLRWRHPARGVLSAGEIIPLFERAGQIDMVGAWALEESMAIAATWPDHLRVAV 504 Query: 486 NFSAVQFQNVGILQTIVDALAEANVAPNRLEIEITESMLISKYGSAPAILHALLELGLTV 545 N SA+Q + QT++ ALA + + P RLE+E+TE+ +I A +L +L LG+ Sbjct: 505 NISALQLRKPNFEQTVLSALARSGLDPRRLELELTETAMILDGERAFEMLASLRRLGIRT 564 Query: 546 ALDDFGTGFSSLTYLRKLPFSRIKIDQSFIRDMLTQPDCAAIVKSVIGLAQELRIGVVAE 605 ALDD GTG+SSL L LP R+KID+SF+ ++ T P CA++ K + L + L + V AE Sbjct: 565 ALDDLGTGYSSLANLVGLPLDRVKIDRSFVANLETNPMCASVTKLSVELGRSLSLAVTAE 624 Query: 606 GVETADQLEYLRQTSCDEVQGYLIGRPMSGSEISALLD 643 GVE QLE LR C E QGYL +P S+I+ L + Sbjct: 625 GVEDRRQLEMLRAFGCREAQGYLFSQPRPASQIAHLFE 662