BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0216.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769032.1| dioxygenase subunit [Bradyrhizobium japonicum U... 498 e-139 ref|YP_001203977.1| putative oxydoreductase [Bradyrhizobium sp. ... 483 e-134 ref|YP_001238274.1| putative oxydoreductase [Bradyrhizobium sp. ... 472 e-131 ref|YP_001993112.1| oxidoreductase FAD/NAD(P)-binding domain-con... 423 e-116 ref|YP_004108078.1| ferredoxin [Rhodopseudomonas palustris DX-1]... 415 e-114 >ref|NP_769032.1| dioxygenase subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC47657.1| blr2392 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/330 (74%), Positives = 276/330 (83%), Gaps = 4/330 (1%) Query: 1 MRFIETWTSATLLAVRDLTPGIREFLLRPDDFTGAPYPVGSHIDVGVTIEGQPQTRSYSL 60 MRFIETWT ATL++ RDL PGIREFL+ PD F GA YPVGSHI+V VTI+G P+TRSYSL Sbjct: 1 MRFIETWTPATLVSTRDLAPGIREFLILPDQFDGAAYPVGSHINVSVTIDGLPETRSYSL 60 Query: 61 VGEADPQGYRIAVRRAADSRGGSRYMWSLAPGARLNITLPTSLVQLDWTRRHYCLIAGGI 120 VGEA +G RIAVRRA DSRGGSRYMW LAPGARL+IT P SL+ +DW R +YCLIAGGI Sbjct: 61 VGEASARGLRIAVRRAEDSRGGSRYMWQLAPGARLDITQPASLLAVDWARDNYCLIAGGI 120 Query: 121 GITPIVGAAQALARRDAAVALHYAVRTRGDAAYLEPLERLLGDRLIVHAGDEGGRLDLDG 180 GITPI+GAAQALARR A V LHYAVR+R +AAYL+ L +LGDRL+VHA DEG RLDLD Sbjct: 121 GITPILGAAQALARRGANVTLHYAVRSRSEAAYLDDLAGMLGDRLVVHASDEGRRLDLDA 180 Query: 181 VFEGLPQDTMTLFCGPMRMLDAARRAWEASGRPLSDLRYETFGSSGLLPTEPFRVRLRGQ 240 +F LPQ + LFCGPMRMLDAAR AW +G PL DLRYETFGSSG LPTE FRVRL+ Sbjct: 181 LFASLPQGALALFCGPMRMLDAARHAWIGAGHPLPDLRYETFGSSGTLPTETFRVRLKDT 240 Query: 241 GTELGTEFVIPRDRSMLDVLNEAGHEVMSDCRRGECGVCALDVVDVDGEIDHRDVFFSDH 300 EL IPR+RSMLDVLN +GH+VM DC+RGECG+CA+DVVDVDGEIDHRDVFFSDH Sbjct: 241 DIELE----IPRERSMLDVLNASGHDVMYDCKRGECGLCAIDVVDVDGEIDHRDVFFSDH 296 Query: 301 QKQESRKICACVSRARGTITVDTLHRSDAL 330 QKQ ++KICACVSRARGTITVDTL R+DA+ Sbjct: 297 QKQSNQKICACVSRARGTITVDTLLRADAI 326 >ref|YP_001203977.1| putative oxydoreductase [Bradyrhizobium sp. ORS 278] emb|CAL75740.1| putative Oxydoreductase [Bradyrhizobium sp. ORS 278] Length = 326 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/330 (71%), Positives = 268/330 (81%), Gaps = 4/330 (1%) Query: 1 MRFIETWTSATLLAVRDLTPGIREFLLRPDDFTGAPYPVGSHIDVGVTIEGQPQTRSYSL 60 MRF + WT+ATL+A RDL GIREF+LRPD + APYPVGSHI V V I GQP RSYSL Sbjct: 1 MRFQDHWTTATLVATRDLASGIREFILRPDGYVCAPYPVGSHIKVSVLIGGQPDVRSYSL 60 Query: 61 VGEADPQGYRIAVRRAADSRGGSRYMWSLAPGARLNITLPTSLVQLDWTRRHYCLIAGGI 120 VGEADP+GYRIAVR A DSRGGSRY+WSL PGARL++T PTSL+Q+ W HYCL+AGGI Sbjct: 61 VGEADPRGYRIAVRHADDSRGGSRYLWSLQPGARLDVTSPTSLLQVGWQYEHYCLVAGGI 120 Query: 121 GITPIVGAAQALARRDAAVALHYAVRTRGDAAYLEPLERLLGDRLIVHAGDEGGRLDLDG 180 GITP+VGAAQAL R+ V+LHYAV++R DAAY + L LLG RL V+A D+ RLDL G Sbjct: 121 GITPLVGAAQALLRKTPNVSLHYAVKSRADAAYADELATLLGGRLAVYAADQSQRLDLAG 180 Query: 181 VFEGLPQDTMTLFCGPMRMLDAARRAWEASGRPLSDLRYETFGSSGLLPTEPFRVRLRGQ 240 +F GLP T LFCGPMRMLDAAR AW ASGR +DL YETFGSSG L TEPF+VRLRG Sbjct: 181 LFAGLPAGTAVLFCGPMRMLDAARSAWAASGRAPADLSYETFGSSGRLSTEPFKVRLRGS 240 Query: 241 GTELGTEFVIPRDRSMLDVLNEAGHEVMSDCRRGECGVCALDVVDVDGEIDHRDVFFSDH 300 G E+ V+PRDRSMLDVLN AGHEVM+DCRRGECGVCA+DVV+VDGEIDHRDVFFS Sbjct: 241 GEEI----VVPRDRSMLDVLNAAGHEVMADCRRGECGVCAIDVVEVDGEIDHRDVFFSAE 296 Query: 301 QKQESRKICACVSRARGTITVDTLHRSDAL 330 QK ESRK+CACVSRA G +T+DTL R+DAL Sbjct: 297 QKHESRKLCACVSRAHGVVTIDTLERADAL 326 >ref|YP_001238274.1| putative oxydoreductase [Bradyrhizobium sp. BTAi1] gb|ABQ34368.1| vanillate demethylase subunit B [Bradyrhizobium sp. BTAi1] Length = 326 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 238/330 (72%), Positives = 272/330 (82%), Gaps = 4/330 (1%) Query: 1 MRFIETWTSATLLAVRDLTPGIREFLLRPDDFTGAPYPVGSHIDVGVTIEGQPQTRSYSL 60 MRF + W+ ATL+A RDL PGIREF+LRPD + APYPVGSHI V V I GQ RSYSL Sbjct: 1 MRFQDNWSPATLVATRDLAPGIREFILRPDGYACAPYPVGSHIKVSVFIAGQADVRSYSL 60 Query: 61 VGEADPQGYRIAVRRAADSRGGSRYMWSLAPGARLNITLPTSLVQLDWTRRHYCLIAGGI 120 VGEADP+GYRIAVR A DSRGGSRY+WSL PGARL++T PTSL+Q+DW R+HYCL+AGGI Sbjct: 61 VGEADPRGYRIAVRFAEDSRGGSRYLWSLQPGARLDVTSPTSLLQVDWQRQHYCLVAGGI 120 Query: 121 GITPIVGAAQALARRDAAVALHYAVRTRGDAAYLEPLERLLGDRLIVHAGDEGGRLDLDG 180 GITP+VGAAQAL R+ VALHYAVR+RGDAAYL+ L LLGDRL V+A D+ RLDL G Sbjct: 121 GITPLVGAAQALMRKTPNVALHYAVRSRGDAAYLDELSPLLGDRLAVYAADQAQRLDLAG 180 Query: 181 VFEGLPQDTMTLFCGPMRMLDAARRAWEASGRPLSDLRYETFGSSGLLPTEPFRVRLRGQ 240 +F GLP T LFCGPMRMLDAAR AW A GR SDL YETFGSSG L TEPF+VRLRG Sbjct: 181 LFAGLPAGTAVLFCGPMRMLDAARAAWAACGRASSDLNYETFGSSGRLATEPFKVRLRGS 240 Query: 241 GTELGTEFVIPRDRSMLDVLNEAGHEVMSDCRRGECGVCALDVVDVDGEIDHRDVFFSDH 300 G E+ ++PRDRSMLDVLN AGHEVM+DCRRGECGVCA+DVV V+GEIDHRDVFFS+ Sbjct: 241 GEEI----IVPRDRSMLDVLNAAGHEVMADCRRGECGVCAIDVVAVEGEIDHRDVFFSEE 296 Query: 301 QKQESRKICACVSRARGTITVDTLHRSDAL 330 QK ++RK+CACVSRA G +T+DTL R+DAL Sbjct: 297 QKHDNRKLCACVSRAHGVVTIDTLERADAL 326 >ref|YP_001993112.1| oxidoreductase FAD/NAD(P)-binding domain-containing protein [Rhodopseudomonas palustris TIE-1] gb|ACF02637.1| oxidoreductase FAD/NAD(P)-binding domain protein [Rhodopseudomonas palustris TIE-1] Length = 330 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 252/330 (76%), Gaps = 5/330 (1%) Query: 1 MRFIETWTSATLLAVRDLTPGIREFLLRPDDFTGAPYPVGSHIDVGVTIEGQPQTRSYSL 60 MRF E WTS+T+++ RDLTP IRE +L PD P GSHI+V V I+GQP RSYSL Sbjct: 1 MRFAEQWTSSTVVSTRDLTPSIREIVLEPDVAVTTCAP-GSHINVAVLIDGQPDKRSYSL 59 Query: 61 VGEADPQGYRIAVRRAADSRGGSRYMWSLAPGARLNITLPTSLVQLDWTRRHYCLIAGGI 120 VG + RIAVR AADSRGGS+ MW+L PG R++IT PTSL +LDW+R+HY LIAGGI Sbjct: 60 VGPPEQGRLRIAVRLAADSRGGSQTMWALKPGQRIDITHPTSLFELDWSRKHYALIAGGI 119 Query: 121 GITPIVGAAQALARRDAAVALHYAVRTRGDAAYLEPLERLLGDRLIVHAGDEGGRLDLDG 180 G+TP++G A ALARR + +HYAV++R DAA + L LLGDRL +HAGDEG RLDLD Sbjct: 120 GVTPMLGIAAALARRSTELTMHYAVKSRSDAALHDELSSLLGDRLRLHAGDEGARLDLDT 179 Query: 181 VFEGLPQDTMTLFCGPMRMLDAARRAWEASGRPLSDLRYETFGSSGLLPTEPFRVRLRGQ 240 F LP+ + + CGP+RML+AAR AW +GRP SDL +ETFGSSG LPT FRVR+ Sbjct: 180 TFRALPEGAVAVLCGPLRMLEAARHAWHQAGRPASDLCFETFGSSGRLPTSEFRVRIAAT 239 Query: 241 GTELGTEFVIPRDRSMLDVLNEAGHEVMSDCRRGECGVCALDVVDVDGEIDHRDVFFSDH 300 G+E+ V+PRDRSMLD LN AG EV+SDC RGECGVCA+DV ++GEIDHRDVFFS+H Sbjct: 240 GSEI----VVPRDRSMLDALNAAGFEVISDCERGECGVCAVDVTAIEGEIDHRDVFFSEH 295 Query: 301 QKQESRKICACVSRARGTITVDTLHRSDAL 330 QK +S K+CACVSRARGT+T+DTL+R D L Sbjct: 296 QKHDSGKMCACVSRARGTVTIDTLYRPDQL 325 >ref|YP_004108078.1| ferredoxin [Rhodopseudomonas palustris DX-1] gb|ADU43345.1| ferredoxin [Rhodopseudomonas palustris DX-1] Length = 330 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/330 (62%), Positives = 247/330 (74%), Gaps = 5/330 (1%) Query: 1 MRFIETWTSATLLAVRDLTPGIREFLLRPDDFTGAPYPVGSHIDVGVTIEGQPQTRSYSL 60 MRF E WTS+T+++ RDLTP IRE +L PD P GSHI+V V I+G+P RSYSL Sbjct: 1 MRFAEQWTSSTVVSTRDLTPSIREIVLEPDTAVTTCAP-GSHINVAVLIDGRPDKRSYSL 59 Query: 61 VGEADPQGYRIAVRRAADSRGGSRYMWSLAPGARLNITLPTSLVQLDWTRRHYCLIAGGI 120 VG D RIAVR A DSRGGS+ MW+L PG R++IT PTSL ++DW+RR YCLIAGGI Sbjct: 60 VGAPDHGRLRIAVRLAGDSRGGSQAMWALKPGQRIDITHPTSLFEIDWSRRSYCLIAGGI 119 Query: 121 GITPIVGAAQALARRDAAVALHYAVRTRGDAAYLEPLERLLGDRLIVHAGDEGGRLDLDG 180 G+TP++G A ALARR + +HYAV++R DA + L LLGDRL +HAGDEG RLDLD Sbjct: 120 GVTPMLGIAAALARRGTELTMHYAVKSRADATLHDELTGLLGDRLRLHAGDEGARLDLDA 179 Query: 181 VFEGLPQDTMTLFCGPMRMLDAARRAWEASGRPLSDLRYETFGSSGLLPTEPFRVRLRGQ 240 F LP+ + + CGP+RML+AAR AW +GRP SDL +ETFGSSG LPT F VR+ Sbjct: 180 TFRALPEGAVAVLCGPLRMLEAARHAWHRAGRPASDLCFETFGSSGRLPTTEFCVRIAAT 239 Query: 241 GTELGTEFVIPRDRSMLDVLNEAGHEVMSDCRRGECGVCALDVVDVDGEIDHRDVFFSDH 300 G E+ V+PRDRSMLD LN AG EV+SDC RGECGVC +DV V+GEIDHRDVFFSDH Sbjct: 240 GNEI----VVPRDRSMLDALNAAGFEVISDCERGECGVCTVDVTAVEGEIDHRDVFFSDH 295 Query: 301 QKQESRKICACVSRARGTITVDTLHRSDAL 330 QK +S K+CACVSRARGT+T+DTL+R D L Sbjct: 296 QKHDSGKMCACVSRARGTVTIDTLYRPDQL 325