BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0215.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769031.1| transcriptional regulator [Bradyrhizobium japon... 431 e-119 ref|YP_001993111.1| GntR family transcriptional regulator [Rhodo... 410 e-112 ref|YP_004108079.1| GntR family transcriptional regulator [Rhodo... 408 e-112 ref|NP_948958.1| GntR family transcriptional regulator [Rhodopse... 405 e-111 ref|YP_001203976.1| GntR family transcriptional regulator [Brady... 399 e-109 >ref|NP_769031.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47656.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 219/248 (88%), Positives = 232/248 (93%) Query: 1 MAERETDRSVSQTVRAQLALRDLVLSGGLRPGERISELQAVEFTGVSRTPVRMALVRLEE 60 MAERE DRSVSQTV+AQLALRD +LSG LRPGERISELQAVE TG SRTPVRMALVRLEE Sbjct: 1 MAEREVDRSVSQTVKAQLALRDQILSGSLRPGERISELQAVETTGASRTPVRMALVRLEE 60 Query: 61 EGLLEAIPSGGFMVKAFSERDILDSIELRGTLEGLAARFAAERGVSSRDLEPLKECLNEI 120 EGLLEAIPSGGFMVKAFSERDI DSIELRGTLEGLAARFAAERGVS+R+LEPLKEC I Sbjct: 61 EGLLEAIPSGGFMVKAFSERDISDSIELRGTLEGLAARFAAERGVSARELEPLKECSAAI 120 Query: 121 DGLVRQDPISVEVFSSYVALNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 D L+RQ PISV+ FSSYV LNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS Sbjct: 121 DELLRQVPISVDAFSSYVTLNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 Query: 181 ALPEARQILLIAQDHHRIVVDAIENREGARAEAIMREHARLAARNLRLALRNRSHLDLLP 240 ALPEA+QIL+I Q+HHR+V+DAIENREGARAEAIMREHARLA RNLRLALRNR+HLDLLP Sbjct: 181 ALPEAQQILIIGQEHHRVVIDAIENREGARAEAIMREHARLAVRNLRLALRNRTHLDLLP 240 Query: 241 ALALINSA 248 ALALI +A Sbjct: 241 ALALIKTA 248 >ref|YP_001993111.1| GntR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF02636.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris TIE-1] Length = 251 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/249 (82%), Positives = 225/249 (90%) Query: 1 MAERETDRSVSQTVRAQLALRDLVLSGGLRPGERISELQAVEFTGVSRTPVRMALVRLEE 60 M ++ +RS+SQTVRAQLALRD+VLSG LR GERISELQAVE TGVSRTPVRMALVRLE+ Sbjct: 1 MNDKAAERSMSQTVRAQLALRDMVLSGQLRAGERISELQAVEITGVSRTPVRMALVRLED 60 Query: 61 EGLLEAIPSGGFMVKAFSERDILDSIELRGTLEGLAARFAAERGVSSRDLEPLKECLNEI 120 EGLL+AIPSGGFMVKAFSERDILDSIELRGT+EGLAAR AAERG S R LEPLK+CL++I Sbjct: 61 EGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLAARLAAERGASVRQLEPLKQCLSDI 120 Query: 121 DGLVRQDPISVEVFSSYVALNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 D LVRQDPISV+ FS+YVALNARFHALL EL S P++RQIDR +ALPFASPS FVMAQS Sbjct: 121 DELVRQDPISVDAFSAYVALNARFHALLNELCGSAPVMRQIDRVAALPFASPSAFVMAQS 180 Query: 181 ALPEARQILLIAQDHHRIVVDAIENREGARAEAIMREHARLAARNLRLALRNRSHLDLLP 240 ALPEA QILLIAQDHHR V+DAIENREGARAEA+MREHARLA RNLRLALRNR+HLDLLP Sbjct: 181 ALPEAHQILLIAQDHHRAVIDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP 240 Query: 241 ALALINSAA 249 AL L+ AA Sbjct: 241 ALTLVTQAA 249 >ref|YP_004108079.1| GntR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU43346.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris DX-1] Length = 251 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/249 (81%), Positives = 225/249 (90%) Query: 1 MAERETDRSVSQTVRAQLALRDLVLSGGLRPGERISELQAVEFTGVSRTPVRMALVRLEE 60 M ++ DRS+SQTVRAQLALRD+VLSG LR GERISELQAV+ TGVSRTPVRMALVRLE+ Sbjct: 1 MNDKAADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLED 60 Query: 61 EGLLEAIPSGGFMVKAFSERDILDSIELRGTLEGLAARFAAERGVSSRDLEPLKECLNEI 120 EGLL+AIPSGGFMVKAFSERDILDSIELRGT+EGLA R AAERG S+R LEPLK+CL++I Sbjct: 61 EGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLATRLAAERGASARQLEPLKQCLSDI 120 Query: 121 DGLVRQDPISVEVFSSYVALNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 D LVRQDPISV+ FS+YVALNARFHALL EL S P++RQIDR +ALPFASPS FVMAQS Sbjct: 121 DELVRQDPISVDAFSAYVALNARFHALLNELCGSAPVMRQIDRVAALPFASPSAFVMAQS 180 Query: 181 ALPEARQILLIAQDHHRIVVDAIENREGARAEAIMREHARLAARNLRLALRNRSHLDLLP 240 ALPEA QILLIAQDHHR V+DAIENREGARAEA+MREHARLA RNLRLALR+R+HLDLLP Sbjct: 181 ALPEAHQILLIAQDHHRAVIDAIENREGARAEAVMREHARLAVRNLRLALRSRTHLDLLP 240 Query: 241 ALALINSAA 249 AL L+ AA Sbjct: 241 ALTLVTQAA 249 >ref|NP_948958.1| GntR family transcriptional regulator [Rhodopseudomonas palustris CGA009] emb|CAE29061.1| transcriptional regulator VanR, GntR family [Rhodopseudomonas palustris CGA009] Length = 251 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/249 (81%), Positives = 223/249 (89%) Query: 1 MAERETDRSVSQTVRAQLALRDLVLSGGLRPGERISELQAVEFTGVSRTPVRMALVRLEE 60 M ++ +RS+SQTVRAQLALRD+VLSG LR GERISELQAVE TGVSRTPVRMALVRLE+ Sbjct: 1 MNDKAAERSMSQTVRAQLALRDMVLSGQLRAGERISELQAVEITGVSRTPVRMALVRLED 60 Query: 61 EGLLEAIPSGGFMVKAFSERDILDSIELRGTLEGLAARFAAERGVSSRDLEPLKECLNEI 120 EGLL+AIPSGGFMVKAFSERDILDSIELRGT+EGLAAR AAERG S R LEPLK+CL++I Sbjct: 61 EGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLAARLAAERGASVRQLEPLKQCLSDI 120 Query: 121 DGLVRQDPISVEVFSSYVALNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 D LVRQDPISV+ FS+YVALNARFHALL EL S P++RQIDR +ALPFASPS FVMAQS Sbjct: 121 DELVRQDPISVDAFSAYVALNARFHALLNELCGSAPVMRQIDRVAALPFASPSAFVMAQS 180 Query: 181 ALPEARQILLIAQDHHRIVVDAIENREGARAEAIMREHARLAARNLRLALRNRSHLDLLP 240 L EA QILLIAQDHHR V+DAIENREGARAEA+MREHARLA RNLRLALRNR+HLDLLP Sbjct: 181 GLAEAHQILLIAQDHHRAVIDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP 240 Query: 241 ALALINSAA 249 AL L+ AA Sbjct: 241 ALTLVTQAA 249 >ref|YP_001203976.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL75739.1| transcriptional regulatory protein, GntR family [Bradyrhizobium sp. ORS 278] Length = 254 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/248 (79%), Positives = 225/248 (90%) Query: 1 MAERETDRSVSQTVRAQLALRDLVLSGGLRPGERISELQAVEFTGVSRTPVRMALVRLEE 60 MAER+ +RS+SQTVRAQL LRD++L+GGLRPGERISELQAVE GVSRTPVRMALVRLEE Sbjct: 4 MAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVRLEE 63 Query: 61 EGLLEAIPSGGFMVKAFSERDILDSIELRGTLEGLAARFAAERGVSSRDLEPLKECLNEI 120 EGLLEAIPSGGFMVK+FSERD+LDSIE+RGT+EGLAAR AAERGVS RD EP++ECL +I Sbjct: 64 EGLLEAIPSGGFMVKSFSERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECLAQI 123 Query: 121 DGLVRQDPISVEVFSSYVALNARFHALLTELSRSPPLIRQIDRASALPFASPSGFVMAQS 180 D L+ IS + FS+YVALNARFHALL ELSRSPP+IRQ+DRASALPFASPSGFVMAQS Sbjct: 124 DELIAPQEISFDAFSAYVALNARFHALLAELSRSPPVIRQVDRASALPFASPSGFVMAQS 183 Query: 181 ALPEARQILLIAQDHHRIVVDAIENREGARAEAIMREHARLAARNLRLALRNRSHLDLLP 240 ALPEAR IL++AQ+HHRIV+DAIENREGARAE IMREHARLAARNLRLA++ R +DL+P Sbjct: 184 ALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMDLVP 243 Query: 241 ALALINSA 248 A ALI ++ Sbjct: 244 AAALIKAS 251