BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0214.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769030.1| vanillate O-demethylase oxygenase subunit [Brad... 659 0.0 ref|YP_001238272.1| vanillate O-demethylase oxygenase, iron-sulf... 637 0.0 ref|YP_001203975.1| vanillate O-demethylase oxygenase, iron-sulf... 635 e-180 ref|YP_485527.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palus... 607 e-172 ref|YP_004108080.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopse... 607 e-172 >ref|NP_769030.1| vanillate O-demethylase oxygenase subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC47655.1| vanillate O-demethylase oxygenase subunit [Bradyrhizobium japonicum USDA 110] Length = 354 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/347 (89%), Positives = 328/347 (94%) Query: 3 KPFPMNAWYAAGWDAEIKHALLPRTICGKHVVMYRKGDGEVVALEDACWHRLVPLSKGRL 62 KPFPMNAWYAA WDAE+K ALLPRTICGKHVVMYRK DG V ALEDACWHRLVPLSKGRL Sbjct: 8 KPFPMNAWYAAAWDAEVKPALLPRTICGKHVVMYRKADGAVAALEDACWHRLVPLSKGRL 67 Query: 63 DGDAVVCGYHGLKYNAQGRCTFMPSQDTINPSACVRAYPVVERHRFIWLWMGDPALADPA 122 +GD VVCGYHGLKYNAQGRCTFMPSQ+TINPSACVRAYPVVERHR+IWLWMGDPALADPA Sbjct: 68 EGDTVVCGYHGLKYNAQGRCTFMPSQETINPSACVRAYPVVERHRYIWLWMGDPALADPA 127 Query: 123 LVPDMHWNHDPAWAGDGKTIHVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVT 182 LVPDMHWNHDPAWAGDGKTI V CDYRLV+DNLMDLTHETFVHGSSIGNDAVAEAPFDVT Sbjct: 128 LVPDMHWNHDPAWAGDGKTIRVNCDYRLVLDNLMDLTHETFVHGSSIGNDAVAEAPFDVT 187 Query: 183 HGEKTVTVTRWMKGIEAPPFWAKQLQKPGPVDRWQIIRFEAPCTVNIDVGVAPAGSGAPE 242 HGEKTVTVTRWM+ IE PPFWAKQL KPG VDRWQIIRFEAPCT+ IDVGVAP G+GAPE Sbjct: 188 HGEKTVTVTRWMRNIEPPPFWAKQLGKPGLVDRWQIIRFEAPCTIAIDVGVAPTGTGAPE 247 Query: 243 GDRSQGVNGYVLNTITPETEKTCHYFWAFVRNHRITEQRLTSEIRDGVAGIFHEDEIILE 302 GDRSQGVNG+VLNTITPETEKTCHYFWAFVRN++I EQR+T+EIR+GV+GIFHEDE+ILE Sbjct: 248 GDRSQGVNGFVLNTITPETEKTCHYFWAFVRNYQIGEQRITTEIREGVSGIFHEDELILE 307 Query: 303 AQQRAMDENPDRVFYNLNIDAGAMWARRVIDRMVAKENPPPQLQAAE 349 AQQRAMDENPDRVFYNLNIDAGAMW R++ID+MVAKEN P LQAAE Sbjct: 308 AQQRAMDENPDRVFYNLNIDAGAMWTRKLIDKMVAKENAPQHLQAAE 354 >ref|YP_001238272.1| vanillate O-demethylase oxygenase, iron-sulfur subunit [Bradyrhizobium sp. BTAi1] gb|ABQ34366.1| vanillate demethylase subunit A [Bradyrhizobium sp. BTAi1] Length = 347 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 294/337 (87%), Positives = 315/337 (93%) Query: 5 FPMNAWYAAGWDAEIKHALLPRTICGKHVVMYRKGDGEVVALEDACWHRLVPLSKGRLDG 64 FPMNAWYAA WDAE+K ALLPRTICGKHVVMYRK DG + ALEDACWHRLVPLSKGRL+G Sbjct: 5 FPMNAWYAAAWDAEVKQALLPRTICGKHVVMYRKADGSIAALEDACWHRLVPLSKGRLEG 64 Query: 65 DAVVCGYHGLKYNAQGRCTFMPSQDTINPSACVRAYPVVERHRFIWLWMGDPALADPALV 124 D VVCGYHGLK++ QGRCTFMPSQ+TINPSACVRAYP VERHRFIWLWMGDPALADPA + Sbjct: 65 DTVVCGYHGLKFSPQGRCTFMPSQETINPSACVRAYPAVERHRFIWLWMGDPALADPATI 124 Query: 125 PDMHWNHDPAWAGDGKTIHVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 PDMHWNHDPAWAGDGKTI VKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG Sbjct: 125 PDMHWNHDPAWAGDGKTIQVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 Query: 185 EKTVTVTRWMKGIEAPPFWAKQLQKPGPVDRWQIIRFEAPCTVNIDVGVAPAGSGAPEGD 244 E+T TVTRWM+GIE PPFWAKQL KPG VDRWQIIRFEAPCTV IDVGVAP G+GAPEGD Sbjct: 185 ERTATVTRWMRGIEPPPFWAKQLGKPGLVDRWQIIRFEAPCTVTIDVGVAPTGTGAPEGD 244 Query: 245 RSQGVNGYVLNTITPETEKTCHYFWAFVRNHRITEQRLTSEIRDGVAGIFHEDEIILEAQ 304 RSQGVNG VLNTITPET+KTCHYFWAF RN+++TEQRLT+EIR+GV+GIF EDE+ILEAQ Sbjct: 245 RSQGVNGMVLNTITPETDKTCHYFWAFARNYQLTEQRLTTEIREGVSGIFREDELILEAQ 304 Query: 305 QRAMDENPDRVFYNLNIDAGAMWARRVIDRMVAKENP 341 QRAMD NP RVFYNLNIDAGAMWARR+IDRM+A+E P Sbjct: 305 QRAMDANPGRVFYNLNIDAGAMWARRIIDRMIARETP 341 >ref|YP_001203975.1| vanillate O-demethylase oxygenase, iron-sulfur subunit [Bradyrhizobium sp. ORS 278] emb|CAL75738.1| vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (vanA-like) [Bradyrhizobium sp. ORS 278] Length = 347 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 292/337 (86%), Positives = 315/337 (93%) Query: 5 FPMNAWYAAGWDAEIKHALLPRTICGKHVVMYRKGDGEVVALEDACWHRLVPLSKGRLDG 64 FPMNAWYAA WDAE+K ALLPRTICGKHVVMYRK DG + ALEDACWHRLVPLSKGRL+G Sbjct: 5 FPMNAWYAAAWDAEVKQALLPRTICGKHVVMYRKADGAIAALEDACWHRLVPLSKGRLEG 64 Query: 65 DAVVCGYHGLKYNAQGRCTFMPSQDTINPSACVRAYPVVERHRFIWLWMGDPALADPALV 124 D VVCGYHGLK++ QGRCT+MPSQ+TINPSACVRAYP VERHRFIWLWMGDPALADPA + Sbjct: 65 DTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRAYPAVERHRFIWLWMGDPALADPATI 124 Query: 125 PDMHWNHDPAWAGDGKTIHVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 PDMHWNHDPAWAGDGKTI VKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG Sbjct: 125 PDMHWNHDPAWAGDGKTIQVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 Query: 185 EKTVTVTRWMKGIEAPPFWAKQLQKPGPVDRWQIIRFEAPCTVNIDVGVAPAGSGAPEGD 244 E+T TVTRWM+GIE PPFWAKQL KPG VDRWQIIRFE+PCTV IDVGVAP G+GAPEGD Sbjct: 185 ERTATVTRWMRGIEPPPFWAKQLGKPGLVDRWQIIRFESPCTVTIDVGVAPTGTGAPEGD 244 Query: 245 RSQGVNGYVLNTITPETEKTCHYFWAFVRNHRITEQRLTSEIRDGVAGIFHEDEIILEAQ 304 RSQGVNG VLNTITPET+KTCHYFWAF RN++++EQRLT+EIR+GV+GIF EDE ILEAQ Sbjct: 245 RSQGVNGMVLNTITPETDKTCHYFWAFARNYKLSEQRLTTEIREGVSGIFREDEFILEAQ 304 Query: 305 QRAMDENPDRVFYNLNIDAGAMWARRVIDRMVAKENP 341 QRAMDENP RVFYNLNIDAGAMWARR+IDRM+A+E P Sbjct: 305 QRAMDENPGRVFYNLNIDAGAMWARRIIDRMIARETP 341 >ref|YP_485527.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] gb|ABD06616.1| Rieske (2Fe-2S) protein [Rhodopseudomonas palustris HaA2] Length = 347 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 294/345 (85%), Positives = 325/345 (94%), Gaps = 1/345 (0%) Query: 5 FPMNAWYAAGWDAEIKHALLPRTICGKHVVMYRKGDGEVVALEDACWHRLVPLSKGRLDG 64 FP+NAWYAA WDA+IKHAL PRTIC KHVVMYRK DG V ALEDACWHRLVPLSKGRL+G Sbjct: 4 FPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEG 63 Query: 65 DAVVCGYHGLKYNAQGRCTFMPSQDTINPSACVRAYPVVERHRFIWLWMGDPALADPALV 124 D VVCGYHGLK++ QGRCT+MPSQ+TINPSACVR+YPVVERHRF+WLWMGDPALADPALV Sbjct: 64 DTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADPALV 123 Query: 125 PDMHWNHDPAWAGDGKTIHVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 PDMHWN DPAWAGDGKTIH +CD+RLVVDNLMDLTHET+VHGSSIGN+AVAEAPFDVTHG Sbjct: 124 PDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDVTHG 183 Query: 185 EKTVTVTRWMKGIEAPPFWAKQLQKPGPVDRWQIIRFEAPCTVNIDVGVAPAGSGAPEGD 244 ++TVTVTRWM+GIEAPPFWA QL+KPGPVDRWQIIRFEAP TV IDVGVAPAGSGAPEGD Sbjct: 184 DRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAPEGD 243 Query: 245 RSQGVNGYVLNTITPETEKTCHYFWAFVRNHRITEQRLTSEIRDGVAGIFHEDEIILEAQ 304 RSQGVNG+VLNT+TPET+ TCHYFWAFVRN+R+ +QRLT+EIR+GV+GIF EDEIILEAQ Sbjct: 244 RSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIILEAQ 303 Query: 305 QRAMDENPDRVFYNLNIDAGAMWARRVIDRMVAKENPPPQLQAAE 349 QRA+ ENPDRVFYNLNIDAGAMW+R++IDRMVAKE P+LQAAE Sbjct: 304 QRAISENPDRVFYNLNIDAGAMWSRKLIDRMVAKE-AAPRLQAAE 347 >ref|YP_004108080.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] gb|ADU43347.1| Rieske (2Fe-2S) iron-sulfur domain [Rhodopseudomonas palustris DX-1] Length = 347 Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust. Identities = 296/345 (85%), Positives = 322/345 (93%), Gaps = 1/345 (0%) Query: 5 FPMNAWYAAGWDAEIKHALLPRTICGKHVVMYRKGDGEVVALEDACWHRLVPLSKGRLDG 64 FP+NAWYAA WDA+IKHAL PRTICGKHVVMYRK DG V ALEDACWHRLVPLSKGRL+G Sbjct: 4 FPLNAWYAAAWDADIKHALFPRTICGKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEG 63 Query: 65 DAVVCGYHGLKYNAQGRCTFMPSQDTINPSACVRAYPVVERHRFIWLWMGDPALADPALV 124 D VVCGYHGLK+N QGRCTFMPSQ+TINPSACVR+YPVVERHRF+WLWMGDP LADPALV Sbjct: 64 DTVVCGYHGLKFNPQGRCTFMPSQETINPSACVRSYPVVERHRFVWLWMGDPVLADPALV 123 Query: 125 PDMHWNHDPAWAGDGKTIHVKCDYRLVVDNLMDLTHETFVHGSSIGNDAVAEAPFDVTHG 184 PDMHWN DPAWAGDGKTIH KCD+RLVVDNLMDLTHET+VHGSSIGN+AVAEAPFDVTHG Sbjct: 124 PDMHWNDDPAWAGDGKTIHAKCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDVTHG 183 Query: 185 EKTVTVTRWMKGIEAPPFWAKQLQKPGPVDRWQIIRFEAPCTVNIDVGVAPAGSGAPEGD 244 ++TVTVTRWM GIE PPFWA QL KPG VDRWQIIRFEAP TV IDVGVAPAG+GAPEGD Sbjct: 184 DRTVTVTRWMHGIEPPPFWAAQLGKPGLVDRWQIIRFEAPGTVTIDVGVAPAGTGAPEGD 243 Query: 245 RSQGVNGYVLNTITPETEKTCHYFWAFVRNHRITEQRLTSEIRDGVAGIFHEDEIILEAQ 304 RSQGVNGYVLNT+TPET+ TCHYFWAFVRN+R+ +QRLT+EIR+GV+GIF EDEIILEAQ Sbjct: 244 RSQGVNGYVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFREDEIILEAQ 303 Query: 305 QRAMDENPDRVFYNLNIDAGAMWARRVIDRMVAKENPPPQLQAAE 349 QRAM ENPDRVFYNLNIDAGAMW+R++IDRMVA+EN P+LQAAE Sbjct: 304 QRAMLENPDRVFYNLNIDAGAMWSRKLIDRMVAQEN-APKLQAAE 347