BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0213.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530315.1| hypothetical protein RPC_0421 [Rhodopseudomonas... 253 2e-65 ref|NP_770838.1| hypothetical protein blr4198 [Bradyrhizobium ja... 246 4e-63 ref|YP_001205422.1| putative signal peptide [Bradyrhizobium sp. ... 207 2e-51 ref|YP_001240257.1| hypothetical protein BBta_4302 [Bradyrhizobi... 205 8e-51 ref|ZP_08070694.1| hypothetical protein Met49242DRAFT_0081 [Meth... 189 4e-46 >ref|YP_530315.1| hypothetical protein RPC_0421 [Rhodopseudomonas palustris BisB18] gb|ABD85996.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 377 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/309 (45%), Positives = 182/309 (58%), Gaps = 21/309 (6%) Query: 24 IDPTAWLHGPALANTTASLNFDDRFGSRSTINSASLYYPLRRGFRSSRGDFNSEFGQIED 83 IDP AW+ + +FD RF S + + RS + ++ Q + Sbjct: 82 IDPIAWVFESTPTSVVEVASFDARFLRDSISDQVAPVALPPAAMRSLTPELEAKLRQAKA 141 Query: 84 ALAGQLRDTQTELPTSQSATASVAATTTATTSTVPMPRSRPAEANLLA-------RNDQP 136 LA L Q+ P A S T + VP+PRSRP A+L+A ND Sbjct: 142 RLAQDL-TAQSVAPPDLIAMTSTPPAQTTSVVAVPLPRSRPVLADLMAAQRSAAVSND-- 198 Query: 137 PPPQPPVQQGDNRTFLQKVADMMPGKLQLASLDPNDGLLSGPSPDLGKLGYDSTTAVYDI 196 PQP L+K ++M G++ LASLDP DG L P+L LGYD+ TAVYDI Sbjct: 199 --PQP--------GLLEKFSEMFSGRMTLASLDP-DGGLGSDGPNLVALGYDNATAVYDI 247 Query: 197 TGRIVYMPDGTKFEAHSGLGNLLDDPAHVNARNAGATPPGIYEMKPREKLFHGVPALRMT 256 + R VYMP+G K EAHSG G L+DDP HV+ N GATPP +YE+KPRE+LFHGV A+RM Sbjct: 248 SARRVYMPNGVKLEAHSGFGALMDDPGHVDKHNVGATPPNVYELKPRERLFHGVQAIRMI 307 Query: 257 PVDGSDTFGRVGLLVHSYMLGPNGDSNGCISVKHYDKFLQAYRSGIIKRIAVVINIKDVQ 316 PV +DT GR GLL HSYMLGPNGDSNGC+S+K YD+FLQAY++G IKR+ VV ++ D Sbjct: 308 PVGRNDTLGRSGLLAHSYMLGPNGDSNGCVSIKQYDRFLQAYQNGEIKRLVVVPSLGDTT 367 Query: 317 SASTRAASN 325 + + R+ S Sbjct: 368 AVARRSTSQ 376 >ref|NP_770838.1| hypothetical protein blr4198 [Bradyrhizobium japonicum USDA 110] dbj|BAC49463.1| blr4198 [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 145/327 (44%), Positives = 196/327 (59%), Gaps = 18/327 (5%) Query: 6 FAVSALALSSGLAAWMVGIDPTAWLHGPALANTTASLNFDDRFGSRSTINSASLYYPLRR 65 +++A+ALS G AAW+ + + L AL A +F+DRF S AS P R Sbjct: 47 LSLAAVALSLGAAAWVADMGDSTPLVSAALPPANAP-SFEDRFAS------ASGSAPARE 99 Query: 66 -GFRS-SRGDFNSEFGQIEDA---LAGQLR-DTQTELPTSQSATASVAATTTATTSTVPM 119 G R+ R N+ ++ DA LA +L+ D T TA + VPM Sbjct: 100 LGLRTLERSALNAVQLKLRDAKAMLAQKLQGDDWRSTLTEDDRTAVDERRPSERADAVPM 159 Query: 120 PRSRPAEANLLARNDQPPPPQPPVQQGDNRTFLQKVADMMPGKLQLASLDPNDGLLSGPS 179 PRSRP +A+ A+ + DNR F +K D K++LASL P DGL S + Sbjct: 160 PRSRPVQADFSAQIASSQAYADTTPRVDNRNFFEKFTD----KIKLASLTPGDGLFS-KA 214 Query: 180 PDLGKLGYDSTTAVYDITGRIVYMPDGTKFEAHSGLGNLLDDPAHVNARNAGATPPGIYE 239 PDL LGYDS TAVYDI+ + +Y+P G EAHSG+G L+DDP HV+ R GATPP Y+ Sbjct: 215 PDLAALGYDSRTAVYDISAKALYLPSGLALEAHSGMGALMDDPQHVDQRMVGATPPATYD 274 Query: 240 MKPREKLFHGVPALRMTPVDGSDTFGRVGLLVHSYMLGPNGDSNGCISVKHYDKFLQAYR 299 +KPREKLFHG+ ALR+TP +G+ GRVGLL HSYMLGP GDSNGC+S+K Y++FL+AY Sbjct: 275 LKPREKLFHGIRALRLTPAEGTSALGRVGLLTHSYMLGPRGDSNGCVSIKDYERFLKAYD 334 Query: 300 SGIIKRIAVVINIKDVQSASTRAASNS 326 +G R+ VV +++ +AS R +++S Sbjct: 335 NGEFNRLVVVPSLRGSATASQRGSTDS 361 >ref|YP_001205422.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL77192.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 346 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/281 (42%), Positives = 165/281 (58%), Gaps = 15/281 (5%) Query: 41 SLNFDDRFGSRSTINSASLYYPLRRGFRS-SRGDFNSEFGQIEDALAGQLRDTQTELPTS 99 S+ F++RF S +A Y + R+ R Q+ DA A +R ++ P Sbjct: 61 SMTFENRFAPASASATA---YSEKDAVRALDRFALRGIDRQLLDARAALVRGMESRDPNQ 117 Query: 100 QSATAS-------VAATTTATTSTVPMPRSRPAEANLLARNDQPPPPQPPVQQGDNRTFL 152 + S T VP+PR RP+ A++ P+ V + D+R+ L Sbjct: 118 RDPNNSDWRPMLTEGNMVTMPAPGVPLPRPRPSVASMPTNLVSASAPEA-VGRVDDRSIL 176 Query: 153 QKVADMMPGKLQLASLDPNDGLLSGPSPDLGKLGYDSTTAVYDITGRIVYMPDGTKFEAH 212 QK++D++P + ASL P+ G++ DLG LGY+ T AVYDI ++VY+P G EAH Sbjct: 177 QKLSDLLPSPSKFASLGPDSGIVRS-GIDLGALGYEKT-AVYDIKAKMVYLPSGIGLEAH 234 Query: 213 SGLGNLLDDPAHVNARNAGATPPGIYEMKPREKLFHGVPALRMTPVDGSDTFGRVGLLVH 272 SG+GNL DDP HVN R GATPP Y++KPREK FHGV ALRM V+G+ T GR GLL H Sbjct: 235 SGMGNLRDDPEHVNQRMVGATPPATYDLKPREKPFHGVRALRMNVVEGT-TLGRSGLLTH 293 Query: 273 SYMLGPNGDSNGCISVKHYDKFLQAYRSGIIKRIAVVINIK 313 YMLGP GDSNGC+S+K+YD+FL+AY G R+ VV+ ++ Sbjct: 294 PYMLGPEGDSNGCVSIKNYDRFLKAYDDGEFNRLVVVVGLE 334 >ref|YP_001240257.1| hypothetical protein BBta_4302 [Bradyrhizobium sp. BTAi1] gb|ABQ36351.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 347 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 102/197 (51%), Positives = 136/197 (69%), Gaps = 4/197 (2%) Query: 117 VPMPRSRPAEANLLARNDQPPPPQPPVQQGDNRTFLQKVADMMPGKLQLASLDPNDGLLS 176 VP+PR RP+ A++ N P + D+R+ LQ+++D++P + ASL P+ G++ Sbjct: 143 VPLPRPRPSTADMPV-NLASAAPAETTGRVDDRSILQRLSDLLPSPTKYASLGPDSGVVR 201 Query: 177 GPSPDLGKLGYDSTTAVYDITGRIVYMPDGTKFEAHSGLGNLLDDPAHVNARNAGATPPG 236 DLG LGY+ T AVYDI ++VY+P G EAHSG+G+L DDP HVN R GATPP Sbjct: 202 S-GIDLGALGYEKT-AVYDIKAKMVYLPSGIGLEAHSGMGSLRDDPEHVNQRMIGATPPA 259 Query: 237 IYEMKPREKLFHGVPALRMTPVDGSDTFGRVGLLVHSYMLGPNGDSNGCISVKHYDKFLQ 296 YE+KPREK FHGV ALRM V+G+ T GR GLL H YMLGP GDSNGC+S+K+YD+FL+ Sbjct: 260 TYELKPREKPFHGVRALRMNVVEGT-TLGRSGLLTHPYMLGPEGDSNGCVSIKNYDRFLK 318 Query: 297 AYRSGIIKRIAVVINIK 313 AY G R+ VV+ ++ Sbjct: 319 AYDEGEFNRLVVVVGLE 335 >ref|ZP_08070694.1| hypothetical protein Met49242DRAFT_0081 [Methylocystis sp. ATCC 49242] gb|EFY01221.1| hypothetical protein Met49242DRAFT_0081 [Methylocystis sp. ATCC 49242] Length = 340 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 167/354 (47%), Gaps = 85/354 (24%) Query: 7 AVSALALSSGLAAWMV------------------GIDPTAWLHGPALANTTASLNFDDRF 48 AVSALALS WM+ G P A+ +GP L + Sbjct: 24 AVSALALSLSAGLWMLHGQPNAPSEVAGAPRAASGTTPVAFPYGPMLVD----------M 73 Query: 49 GSRSTINSASLYYPLRRGFRSSRGDFNSEFGQIEDALAGQLRDTQTELPTSQSATASVAA 108 G+R+ + S ++ ++E + +T + P + A Sbjct: 74 GARARMAS------------------TAQTARVEAKV-----ETSPQTPAAVPEQQQAAT 110 Query: 109 TTTATTSTVPMPRSRPAEANLLARNDQPPPPQPPVQQG-------------DNRTFLQKV 155 T P+P RP+E A P + P++Q DNR+ +K Sbjct: 111 TAVVEGEVAPLPPRRPSELRYSASRG---PVRVPLRQALQNAPAAPAAAPADNRSIFEKF 167 Query: 156 ----------ADMMPGKLQLASLDPNDGLLSGPSPDLGKL-------GYDSTTAVYDITG 198 A PG+ LA GL G P G D TA+YDI+ Sbjct: 168 FGASTPASPQAAQAPGQ-ALAYAPAETGLFGGTKPATAPAPVSPSTGGADRYTAIYDISA 226 Query: 199 RIVYMPDGTKFEAHSGLGNLLDDPAHVNARNAGATPPGIYEMKPREKLFHGVPALRMTPV 258 VYMP+GTK EAHSGLG+ LDDP +V+ R G TPP +Y + PRE LFHGV ALR+TP+ Sbjct: 227 HTVYMPNGTKLEAHSGLGSRLDDPRYVHERMHGPTPPHVYSLSPREALFHGVEALRLTPI 286 Query: 259 DGSDTFGRVGLLVHSYMLGPNGDSNGCISVKHYDKFLQAYRSGIIKRIAVVINI 312 G + FGR GLL H+YMLGPNGDSNGC+S ++YD FLQAY+ G +KR+ VV ++ Sbjct: 287 GGGNIFGRAGLLAHTYMLGPNGDSNGCVSFRNYDAFLQAYKRGEVKRLVVVAHM 340