BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0211.p (535 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628136.1| hypothetical protein CSIRO_1207 [Bradyrhizobi... 446 e-123 ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium lot... 409 e-112 ref|ZP_07776665.1| sensory box/GGDEF domain/EAL domain protein [... 384 e-104 ref|YP_004352741.1| diguanylate cyclase/phosphodiesterase [Pseud... 380 e-103 ref|YP_349814.1| PAS/PAC sensor-containing diguanylate cyclase/p... 380 e-103 >ref|ZP_08628136.1| hypothetical protein CSIRO_1207 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09045.1| hypothetical protein CSIRO_1207 [Bradyrhizobiaceae bacterium SG-6C] Length = 808 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 256/552 (46%), Positives = 343/552 (62%), Gaps = 28/552 (5%) Query: 3 MFFSFRS--WALWRVVGPLLAIVLLLGGLSAGSLQVMSAVRAYVAGESMWSKGQKDAIHD 60 M F+F S L R+V P +AIVLL L+ SL V+S+VRAYV GES+WSKGQKDAIH Sbjct: 1 MKFNFLSARMRLLRLVSPFVAIVLLQAFLAGLSLSVLSSVRAYVGGESLWSKGQKDAIHY 60 Query: 61 LQTYVSTGAPLYLQKFDAAIAVPLADRTARRALESPGNNDAVARAGFARAGNHDDDIGGL 120 L Y TG Y ++++ +I PL DR AR AL+ + ARAGF + GNH +DI GL Sbjct: 61 LTLYGETGDDRYFEQYEKSITAPLGDRAARIALDKKPVDIKAARAGFLQGGNHPEDIDGL 120 Query: 121 IWLFKYFRKMHHVAGAVTAWRNSDALLDQLIEIRNEAANDVALHDPSAATIRHWAERIGV 180 IWL++YFR++ A+ W N+D +LD L+++ + + S + ERI Sbjct: 121 IWLYRYFRQLPPFKTAIRHWMNTDPMLDDLMDLAKQIQLEQNGTIASQQELSSLRERIDG 180 Query: 181 VDAALSTLAVDFSDHLGKASRQVSALLLLVNLVIAACLAGIVLVHTRRMLWRRWLAETAL 240 +A + A+ F+ LG SRQV L +VNL A L +LV TRR L +R AL Sbjct: 181 FNARFAPEAMSFAKSLGNGSRQVKLALTIVNLFTAGLLVAFLLVVTRRFLAQRRRFVHAL 240 Query: 241 AVEKERAQLTLASIGDAVIVMTQDDRVDYMNTAAQRLIAA-GQEVTGRPLASLFNIAE-- 297 EKERAQ+TLA+IGDAVI + RVDYMN AA+RL+A+ G P+ SLF I + Sbjct: 241 RSEKERAQITLAAIGDAVISTDAEGRVDYMNPAAERLVASRALSARGLPIDSLFRILDEE 300 Query: 298 ----------QPVRGSFDADDESRPQLLVRPDHSSVPVSVVETPIVHAGEPAGRVMIIHD 347 Q ++GS + +RPQLL RPD +SV +S+ TP+ G AG V+++HD Sbjct: 301 TGQQRENQFRQILQGS-NLPPTTRPQLLQRPDSTSVAISMTGTPLYKDGTVAGAVLVLHD 359 Query: 348 MTAERRLVEELAWAASHDALTGLANRRQFEFELHKAMSG------SPAMGADLMLIDLDQ 401 MT+E++ + L+W ASHD+LT LANRR+FE L KA+ SP LM +DLDQ Sbjct: 360 MTSEKKFIARLSWQASHDSLTKLANRREFEHRLEKALQAQDHGDTSPRA---LMFLDLDQ 416 Query: 402 FKIVNDTCGHMAGDRLLKQVARLLAAEVGGSGLVARLGGDEFGILLHEDGSATHDVAADV 461 FKI+NDTCGH AGD+LL +VA +L + L+ARLGGDEF ILL E+G + AA V Sbjct: 417 FKIINDTCGHAAGDKLLCEVAEVLQLHLRVDDLLARLGGDEFAILL-ENGDL--ERAAIV 473 Query: 462 AERIRAVIEQSNFVYEGSSFRISASIGLVGLADSAGVQDALRLADVACFLAKDKGRNRVQ 521 AE++R ++ NF++ G SF ++ASIGLV + A + LR AD+AC+LAK+KGRNR+Q Sbjct: 474 AEKLRQAVQDLNFIWNGRSFTVTASIGLVQIHGRATKDETLRTADLACYLAKEKGRNRIQ 533 Query: 522 EHRPSDTGMAVR 533 H PSDT + R Sbjct: 534 IHNPSDTELLHR 545 >ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium loti MAFF303099] dbj|BAB50121.1| mlr3171 [Mesorhizobium loti MAFF303099] Length = 832 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/535 (44%), Positives = 331/535 (61%), Gaps = 20/535 (3%) Query: 15 VVGPLLAIVLLLGGLSAGSLQVMSAVRAYVAGESMWSKGQKDAIHDLQTYVSTGAPLYLQ 74 +V P +A+VL+ +++ SL +SAVRAYV GES WSKGQK AI+ L Y TG + Sbjct: 18 LVWPFIAVVLIQALVASLSLYTLSAVRAYVGGESQWSKGQKHAIYFLSLYADTGNEEFFT 77 Query: 75 KFDAAIAVPLADRTARRALESPGNNDAVARAGFARAGNHDDDIGGLIWLFKYFRKMHHVA 134 ++ AIAVPLADR+AR ALE P + ARAGF + NH DD+ GLIWLF FR ++ Sbjct: 78 EYREAIAVPLADRSARLALEQPEPDTEAARAGFLQGRNHPDDVAGLIWLFHNFRNFSYLD 137 Query: 135 GAVTAWRNSDALLDQLIEIRNEAANDVALHDPSAATIRHWAERIGVVDAALSTLAVDFSD 194 A+ W +D ++ + + + + S A I W I +D ++ L+ FSD Sbjct: 138 TAIRHWAAADTMILAIQRLGDTMHATLGKGPASTAEISTWKAEIHRLDRQVTPLSKAFSD 197 Query: 195 HLGKASRQVSALLLLVNLVIAACLAGIVLVHTRRMLWRRWLAETALAVEKERAQLTLASI 254 LG+ SR + LL NLV AA L + ++ TR++L +R + AL E+ERAQ+TLASI Sbjct: 198 SLGEGSRFIRMLLTFANLVTAALLILLAVLRTRKLLAQRQAFQLALNAERERAQITLASI 257 Query: 255 GDAVIVMTQDDRVDYMNTAAQRLIAAGQEVT-GRPLASLFN-------IAEQPVRGSFDA 306 G AVI +D R+DYMN A++L+A T G+P+ASLF + E + G A Sbjct: 258 GQAVISTGRDGRLDYMNAVAEKLLACPFGATRGKPIASLFRLVDKDTGVEETQLVGRLLA 317 Query: 307 DD----ESRPQLLVRPDHSSVPVSVVETPIVHAGEPAGRVMIIHDMTAERRLVEELAWAA 362 + +RPQLL RPD S VPV++ P++ +G+ G V+ HDMT E +E L+W A Sbjct: 318 GEARRSSARPQLLQRPDGSVVPVALTGAPLLVSGDVVGAVLAFHDMTREEDYIERLSWQA 377 Query: 363 SHDALTGLANRRQFEFELHKA---MSGSPAMGADLMLIDLDQFKIVNDTCGHMAGDRLLK 419 SHDALTGLA+RR FE L + + G P A LM +DLDQFK+VNDTCGH AGD+LL+ Sbjct: 378 SHDALTGLADRRDFESRLERTIVELRGQPRQHA-LMYLDLDQFKLVNDTCGHAAGDQLLR 436 Query: 420 QVARLLAAEVGGSGLVARLGGDEFGILLHEDGSATHDVAADVAERIRAVIEQSNFVYEGS 479 Q++ LL E+ ++ARLGGDEFG+LL + D A D+AER+RA ++ +FV++G Sbjct: 437 QISALLTCELRPGDVLARLGGDEFGVLLVD---CEADEACDIAERLRAAVQNLHFVWDGR 493 Query: 480 SFRISASIGLVGLADS-AGVQDALRLADVACFLAKDKGRNRVQEHRPSDTGMAVR 533 S S+G+V +A++ +++ LR ADVAC++AK+KGRNRVQ H D + R Sbjct: 494 PLNTSVSVGMVEIANAQVTIEETLRAADVACYMAKEKGRNRVQIHSDCDVDLRER 548 >ref|ZP_07776665.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens WH6] gb|EFQ62099.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens WH6] Length = 819 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 222/535 (41%), Positives = 314/535 (58%), Gaps = 20/535 (3%) Query: 15 VVGPLLAIVLLLGGLSAGSLQVMSAVRAYVAGESMWSKGQKDAIHDLQTYVSTGAPLYLQ 74 +V P +A+VL L SL V+SAVR YVAGES+WSKGQKDAI+ L Y Sbjct: 15 IVWPFIAVVLFQALLGCVSLYVLSAVRGYVAGESLWSKGQKDAIYYLTLYADNRDQTTYL 74 Query: 75 KFDAAIAVPLADRTARRALESPGNNDAVARAGFARAGNHDDDIGGLIWLFKYFRKMHHVA 134 K+ AIAVP R AL+ P + AR G + GNH DD+ LIWL+ FR ++ Sbjct: 75 KYQQAIAVPQGGHELRIALDRPIPDLGAARLGILKGGNHPDDVSSLIWLYLNFRHFSYLE 134 Query: 135 GAVTAWRNSDALLDQLIEIRNEAANDVALHDPSAATIRHWAERIGVVDAALSTLAVDFSD 194 A+ W D L QL + E N + SA ++ W I ++ ++ A FSD Sbjct: 135 KAIELWTVGDGYLVQLDTLAQEMHNAIDHDQISANDVQQWKAHITAINEGVTPAAKAFSD 194 Query: 195 HLGKASRQVSALLLLVNLVIAACLAGIVLVHTRRMLWRRWLAETALAVEKERAQLTLASI 254 LG+ SR + LLL+ NL A L + L+ TR++L +R AL EKERAQ+TL SI Sbjct: 195 ALGEGSRMILRLLLITNLATALGLIVLALLRTRKLLAQRHAFAEALKDEKERAQITLESI 254 Query: 255 GDAVIVMTQDDRVDYMNTAAQRLIA-AGQEVTGRPLASLFNIAE---QP---------VR 301 GD VI D + YMN AA+ L + G PLA+LFN+ + QP ++ Sbjct: 255 GDGVITTDVDGAITYMNPAAEALTHWKSVQAQGLPLAALFNLLDDDAQPDGLTLIEHILK 314 Query: 302 GSFDADDESRPQLLVRPDHSSVPVSVVETPIVHAGEPAGRVMIIHDMTAERRLVEELAWA 361 G E + + R D S+V V++V PI AG+ +G V+++HDMT ER+ + L+W Sbjct: 315 GRLRGGSE-HSKTIQRVDGSTVSVTLVGAPIRSAGKISGAVLVLHDMTQERQYIANLSWQ 373 Query: 362 ASHDALTGLANRRQFEFELHKAMSGSPAMGAD--LMLIDLDQFKIVNDTCGHMAGDRLLK 419 A+HDALTGLANRR+FE+ L + ++ + G LM +DLDQFK+VNDTCGH AGD LL+ Sbjct: 374 ATHDALTGLANRREFEYRLEQVLNPARHQGERHALMFLDLDQFKLVNDTCGHAAGDELLR 433 Query: 420 QVARLLAAEVGGSGLVARLGGDEFGILLHEDGSATHDVAADVAERIRAVIEQSNFVYEGS 479 + LL +++ +ARLGGDEFGILL + T A +AE +R ++ +FV++G Sbjct: 434 HICALLQSDLREGDTLARLGGDEFGILLENCPAPT---AEKIAESLRHTVQSLHFVWKGR 490 Query: 480 SFRISASIGLVGLADS-AGVQDALRLADVACFLAKDKGRNRVQEHRPSDTGMAVR 533 F + SIGLV ++++ ++ +LR AD+AC++AK+KGRNRVQ + D+ ++VR Sbjct: 491 PFMTTVSIGLVHISNTPTTLESSLRAADMACYMAKEKGRNRVQVYHSDDSELSVR 545 >ref|YP_004352741.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67737.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 819 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/535 (40%), Positives = 318/535 (59%), Gaps = 20/535 (3%) Query: 15 VVGPLLAIVLLLGGLSAGSLQVMSAVRAYVAGESMWSKGQKDAIHDLQTYVSTGAPLYLQ 74 +V P +A+VL L SL V+SAVR YVAGES+WSKGQKDAI+ L Y + + Sbjct: 15 IVWPFIAVVLFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDEAIFR 74 Query: 75 KFDAAIAVPLADRTARRALESPGNNDAVARAGFARAGNHDDDIGGLIWLFKYFRKMHHVA 134 K+ AIAVP R AL+ + ARAG + GNH DD+ +IWL+ FR ++ Sbjct: 75 KYQQAIAVPEGGHELRVALDRKPPDLEAARAGILQGGNHPDDVSSVIWLYLNFRHFSYLE 134 Query: 135 GAVTAWRNSDALLDQLIEIRNEAANDVALHDPSAATIRHWAERIGVVDAALSTLAVDFSD 194 A+ W D L +L + + + +A S IR W +I ++ +++ A FSD Sbjct: 135 EAIDLWTVGDGYLIELDNVARQMHSSIAAGQASEVDIRGWKAQIFAINDSVTPAAKAFSD 194 Query: 195 HLGKASRQVSALLLLVNLVIAACLAGIVLVHTRRMLWRRWLAETALAVEKERAQLTLASI 254 LG+ SR + LLL+ N A L + L+ T ++L +R + AL +EKERAQ+TL SI Sbjct: 195 ALGEGSRFILRLLLVTNFATALGLIVLALLRTHKLLAQRQVFANALQMEKERAQITLQSI 254 Query: 255 GDAVIVMTQDDRVDYMNTAAQRLIA-AGQEVTGRPLASLFN------------IAEQPVR 301 GD VI + + YMN AA+ + + TG PLA+LFN + E + Sbjct: 255 GDGVITTDVEGAIAYMNPAAEAMTHWKAEHATGLPLAALFNLLDDNAQTEGLTLIEHILS 314 Query: 302 GSFDADDESRPQLLVRPDHSSVPVSVVETPIVHAGEPAGRVMIIHDMTAERRLVEELAWA 361 G E +L+ R D S+V V++V PI HAG+ +G V+++HDMT ER+ + L+W Sbjct: 315 GRLSGASE-HSKLIQRLDGSTVSVTLVGAPIRHAGKVSGAVLVLHDMTQERQYIANLSWQ 373 Query: 362 ASHDALTGLANRRQFEFELHKAMSG-SPAMGAD-LMLIDLDQFKIVNDTCGHMAGDRLLK 419 A+HDALTGLANRR+FE+ L +A+ + +G LM +DLDQFK+VNDTCGH AGD LL+ Sbjct: 374 ATHDALTGLANRREFEYRLEQALHNLTRQVGRHALMFLDLDQFKLVNDTCGHAAGDELLR 433 Query: 420 QVARLLAAEVGGSGLVARLGGDEFGILLHEDGSATHDVAADVAERIRAVIEQSNFVYEGS 479 + LL + + + +ARLGGDEFGILL + + + A +AE +R ++ +FV++G Sbjct: 434 HICALLQSGLRENDTLARLGGDEFGILLE---NCSPEAAEKIAEGLRQTVQNLHFVWKGR 490 Query: 480 SFRISASIGLVGLADSAGVQDA-LRLADVACFLAKDKGRNRVQEHRPSDTGMAVR 533 F + SIGLV +A + +A LR AD+AC++AK+KGRNRVQ + D+ +++R Sbjct: 491 PFVTTVSIGLVHIAQTPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLR 545 >ref|YP_349814.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gb|ABA75823.1| putative GGDEF/EAL domain signalling-related membrane protein [Pseudomonas fluorescens Pf0-1] Length = 820 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/535 (41%), Positives = 312/535 (58%), Gaps = 20/535 (3%) Query: 15 VVGPLLAIVLLLGGLSAGSLQVMSAVRAYVAGESMWSKGQKDAIHDLQTYVSTGAPLYLQ 74 +V P +A+VL L SL V+SAVR YVAGES+WSKGQKDAI+ L Y + Sbjct: 15 IVWPFIAVVLFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDEAIYL 74 Query: 75 KFDAAIAVPLADRTARRALESPGNNDAVARAGFARAGNHDDDIGGLIWLFKYFRKMHHVA 134 K+ AIAVP R AL+ + AR G + GNH DD+ LIWL+ FR ++ Sbjct: 75 KYQNAIAVPQGGHQLRLALDKQPPDLQAAREGILKGGNHPDDVSSLIWLYLNFRHFSYLE 134 Query: 135 GAVTAWRNSDALLDQLIEIRNEAANDVALHDPSAATIRHWAERIGVVDAALSTLAVDFSD 194 A+ W DA L +L + E + + + A IR W +RI ++ ++ A FSD Sbjct: 135 IAIDRWTLGDAYLVELDGVAQEMHQRITANAATEADIRRWKDRIFAINDGVTPAAKAFSD 194 Query: 195 HLGKASRQVSALLLLVNLVIAACLAGIVLVHTRRMLWRRWLAETALAVEKERAQLTLASI 254 LG+ SR + LLL NL A L + L+ TR++L +R AL +EK+RA +TL SI Sbjct: 195 ALGEGSRMILRLLLFTNLATALGLIVLALLRTRKLLKQRHAFAEALQLEKDRAHVTLHSI 254 Query: 255 GDAVIVMTQDDRVDYMNTAAQRLIA-AGQEVTGRPLASLFN------------IAEQPVR 301 GD VI +DYMN AA+ L ++ +G PLA+LFN + E + Sbjct: 255 GDGVITTDVSGAIDYMNPAAEALTHWKAEQASGLPLAALFNLLDDNAQTEGLTLIEHILS 314 Query: 302 GSFDADDESRPQLLVRPDHSSVPVSVVETPIVHAGEPAGRVMIIHDMTAERRLVEELAWA 361 G E +L+ R D S+V V++V PI +AG+ +G V+++HDMT ER+ + L+W Sbjct: 315 GQLTGGSE-HSKLIQRLDGSTVSVTLVGAPIRNAGKVSGAVLVLHDMTQERQYIANLSWQ 373 Query: 362 ASHDALTGLANRRQFEFELHKAMSGSPAMGAD--LMLIDLDQFKIVNDTCGHMAGDRLLK 419 A+HDALTGLANRR+FE+ L +A+ LM +DLDQFK+VNDTCGH AGD LL+ Sbjct: 374 ATHDALTGLANRREFEYRLEQALHNLTRQAGRHALMFLDLDQFKLVNDTCGHAAGDELLR 433 Query: 420 QVARLLAAEVGGSGLVARLGGDEFGILLHEDGSATHDVAADVAERIRAVIEQSNFVYEGS 479 + LL + + +ARLGGDEFGILL + + A +AE +R ++ +FV++G Sbjct: 434 HICALLQSGLREGDTLARLGGDEFGILLE---NCAPEAAEKIAESLRQTVQNLHFVWKGR 490 Query: 480 SFRISASIGLVGLADSAGVQDA-LRLADVACFLAKDKGRNRVQEHRPSDTGMAVR 533 F + SIGLV +A + +A LR AD+AC++AK+KGRNRVQ + D+ +++R Sbjct: 491 PFLTTVSIGLVHVAQNPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLR 545