BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0203.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770483.1| hypothetical protein blr3843 [Bradyrhizobium ja... 468 e-130 ref|ZP_02885049.1| conserved hypothetical protein [Burkholderia ... 256 3e-66 ref|ZP_03569900.1| conserved hypothetical protein [Burkholderia ... 254 8e-66 ref|ZP_02881390.1| conserved hypothetical protein [Burkholderia ... 253 2e-65 ref|ZP_08406652.1| hypothetical protein HGR_12297 [Hylemonella g... 249 4e-64 >ref|NP_770483.1| hypothetical protein blr3843 [Bradyrhizobium japonicum USDA 110] dbj|BAC49108.1| blr3843 [Bradyrhizobium japonicum USDA 110] Length = 289 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/289 (76%), Positives = 252/289 (87%) Query: 1 MEKLRLRAVLGNHPHIRAVKNGELRSELFDLDFTGFTPTNAAFKPMVREQAFDVCEMAIV 60 M++L+L+AVLG+HPH++AVK GELRS+LFDLDF +TPTN AFKPMVREQAFDVCEMAIV Sbjct: 1 MDRLKLKAVLGSHPHVQAVKGGELRSDLFDLDFIEYTPTNTAFKPMVREQAFDVCEMAIV 60 Query: 61 TYLMARAHGKPLVLLPAAMVGRFQHGHALYCADRGTLVPADLEGKRVGIRSFTTTTGAWM 120 TYLMA+AHGKPLVLLPA M+GRFQH +ALY GTL P+DLEGKRVGIRSFTTTTGAW+ Sbjct: 61 TYLMAKAHGKPLVLLPATMLGRFQHSYALYNPSHGTLGPSDLEGKRVGIRSFTTTTGAWI 120 Query: 121 RGILANDHGMNLDSINWVTFEEPHVAEYVDSTERAPKGKTIIQMLRDGELDAVLGETSSD 180 RGILAND+G++LD+I WVTFE+PHVAEYVD+TERAPK K +QML DGELDAVLGETS+D Sbjct: 121 RGILANDYGVDLDNIRWVTFEDPHVAEYVDTTERAPKDKKPLQMLIDGELDAVLGETSND 180 Query: 181 PAFKPLFADPAAEAARWYARHGVVPVNHLVVVTSRLATSRPDVVRSLYDLLKRGKAEAGP 240 P KPLF DPA EAA+WYAR GVVP+NHLVVVT RLATSRPDVV +YDLLKR KA+ GP Sbjct: 181 PRLKPLFPDPATEAAKWYARRGVVPINHLVVVTERLATSRPDVVAGVYDLLKRNKAQVGP 240 Query: 241 PGMPDLVPFGVAANRKPLELMIDYSVQQALIPRRVTVDELFDGTTRDLN 289 PDL PFG+ ANRKPLEL++DY+ QQALIPRR V+ELFD T R LN Sbjct: 241 AATPDLAPFGIEANRKPLELIVDYAFQQALIPRRYAVEELFDETARGLN 289 >ref|ZP_02885049.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT09481.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 302 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 133/289 (46%), Positives = 187/289 (64%), Gaps = 8/289 (2%) Query: 6 LRAVLGNHPHIRAVKNGELRSELFDLDFTGFTPTNAAFKPMVREQAFDVCEMAIVTYLMA 65 LR L +P +A+K G + S+L LD+ G TP + FK MVRE AFD E+AIVT+L A Sbjct: 15 LRTNLATYPVTKAMKEGRVASDLVKLDYCGPTPAHNGFKAMVRENAFDAGELAIVTFLQA 74 Query: 66 RAHGKPLVLLPAAMVGRFQHGHALYCADRGTLVPADLEGKRVGIRSFTTTTGAWMRGILA 125 +A+GKP VLLP + GRFQH A Y + G L P D+EG++VG+R++T TT W+RGIL Sbjct: 75 KAYGKPYVLLPTPISGRFQHHCAGYNIEFGQLDPKDIEGRKVGVRTYTQTTALWIRGILR 134 Query: 126 NDHGMNLDSINWVTFEEPHVAEYVD--STERAPKGKTIIQMLRDGEL-DAVLGE-TSSDP 181 +++G++LD + W+T + H+AEY D + ER P G +I QM+ DGEL A+LGE D Sbjct: 135 HEYGVDLDKVTWMTLGDGHLAEYRDPNNCERLPAGSSISQMMLDGELAAALLGEDMPKDE 194 Query: 182 AFKPLFADPAAEAARWYARHGVVPVNHLVVVTSRLATSRPDVVRSLYDLL--KRGKAEAG 239 + L + A A W+AR GVVP+NH+ VV ++ RPD+VR LY ++ R + E G Sbjct: 195 RVRTLVPNAQAAAKDWFAREGVVPINHMFVVHEDISKKRPDIVRELYRMIVESRTQTEGG 254 Query: 240 PPGMPDLVPFGVAANRKPLELMIDYSVQQALIPRRVTVDELFDGTTRDL 288 P + P G+ NRK ++L ID+++ Q +IP R++VDELFD T L Sbjct: 255 VPAV--FPPIGLEENRKGIQLAIDWALDQKIIPHRLSVDELFDDVTGSL 301 >ref|ZP_03569900.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03576542.1| conserved hypothetical protein [Burkholderia multivorans CGD2] ref|ZP_03585541.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gb|EEE00133.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gb|EEE09885.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE15807.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 297 Score = 254 bits (650), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 133/289 (46%), Positives = 189/289 (65%), Gaps = 9/289 (3%) Query: 6 LRAVLGNHPHIRAVKNGELRSELFDLDFTGFTPTNAAFKPMVREQAFDVCEMAIVTYLMA 65 LR L + +A+++G ++S+L LDF G TP + FK MVRE AFD E+AIVT+L A Sbjct: 11 LRTNLSEYAVTKAMRDGRVKSDLVTLDFCGPTPAHNGFKAMVRESAFDAGELAIVTFLQA 70 Query: 66 RAHGKPLVLLPAAMVGRFQHGHALYCADRGTLVPADLEGKRVGIRSFTTTTGAWMRGILA 125 +A+GKP VLLP + GRFQH A Y D G L P D+EGK+VG+R++T TT W+RGIL Sbjct: 71 KAYGKPYVLLPTPISGRFQHHCAGYNIDFGHLDPKDIEGKKVGVRTYTQTTALWIRGILR 130 Query: 126 NDHGMNLDSINWVTFEEPHVAEYVD--STERAPKGKTIIQMLRDGEL-DAVLGE-TSSDP 181 +++G++LD + W+T + H+AEY D + +R PKG +I +M+ GEL A+LGE D Sbjct: 131 HEYGVDLDKVTWMTLNDGHLAEYNDPPNCQRLPKGSSIPEMMLRGELAAALLGEDMPKDE 190 Query: 182 AFKPLFADPAAEAARWYARHGVVPVNHLVVVTSRLATSRPDVVRSLYDLL--KRGKAEAG 239 + L D A W+AR VVP+NH+ VV R++ RPD+VR +Y ++ R AE Sbjct: 191 RVRTLVPDAQRAAKDWFAREQVVPINHMFVVHERVSKERPDIVREIYRMIVESRSLAEGV 250 Query: 240 PPGMPDLVPFGVAANRKPLELMIDYSVQQALIPRRVTVDELFDGTTRDL 288 P P P G+ ANRK +EL I++++ Q ++PRR++VDELFD T +L Sbjct: 251 PAVFP---PIGLEANRKGIELAIEWALDQKILPRRLSVDELFDDVTANL 296 >ref|ZP_02881390.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT12819.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 310 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/287 (47%), Positives = 181/287 (63%), Gaps = 6/287 (2%) Query: 1 MEKLRLRAVLGNHPHIRAVKNGELRSELFDLDFTGFTPTNAAFKPMVREQAFDVCEMAIV 60 M L L+ L +PH R +K+GEL L F P + AF PM R QA+DV EMAIV Sbjct: 12 MPPLELKIALKTYPHTRPLKDGELADPNVQLMFEDIEPIHRAFAPMARRQAYDVSEMAIV 71 Query: 61 TYLMARAHGKPLVLLPAAMVGRFQHGHALYCADRGTLVPADLEGKRVGIRSFTTTTGAWM 120 TYL A+A+ KP+VLLPA + RFQ G +Y A RG L ++L GK VG+RS++ TT W+ Sbjct: 72 TYLQAKAYNKPVVLLPAVVAARFQQGCIIYNAQRGKLGVSNLVGKTVGVRSYSQTTAMWV 131 Query: 121 RGILANDHGMNLDSINWVTFEEPHVAEYVDST--ERAPKGKTIIQMLRDGELD-AVLGET 177 R ILAN +G+ L+ I+WVT E H+ EY D + RA GK +++MLR GE+D A+LG Sbjct: 132 RAILANTYGVPLEEIDWVTTEGAHLEEYRDPSFVRRAEPGKQLLRMLRAGEIDAAILGND 191 Query: 178 SSDPA-FKPLFADPAAEAARWYARHGVVPVNHLVVVTSRLATSRPDVVRSLYDLLKRGKA 236 D A +P+ D A+ WYA H VP+NH+VVVT LA + P VR++YDLL RGKA Sbjct: 192 LPDEAGLEPVIDDAASADLAWYAIHRYVPLNHVVVVTQSLADTHPRAVRAVYDLLCRGKA 251 Query: 237 EAGP--PGMPDLVPFGVAANRKPLELMIDYSVQQALIPRRVTVDELF 281 G PD + FG A R PLE I + QQ L+PR++++DE+F Sbjct: 252 SVASHNAGKPDKLLFGYDALRGPLEETIAFCEQQQLLPRKLSIDEIF 298 >ref|ZP_08406652.1| hypothetical protein HGR_12297 [Hylemonella gracilis ATCC 19624] gb|EGI76210.1| hypothetical protein HGR_12297 [Hylemonella gracilis ATCC 19624] Length = 298 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 134/291 (46%), Positives = 186/291 (63%), Gaps = 8/291 (2%) Query: 4 LRLRAVLGNHPHIRAVKNGELRSELFDLDFTGFTPTNAAFKPMVREQAFDVCEMAIVTYL 63 L LR L ++P A+K+G ++S+L LD+ G +P + FK MVRE FD E+AIVTYL Sbjct: 9 LTLRTNLADYPVTLAMKDGRVKSDLVTLDYCGPSPAHNGFKSMVRENKFDAGELAIVTYL 68 Query: 64 MARAHGKPLVLLPAAMVGRFQHGHALYCADRGTLVPADLEGKRVGIRSFTTTTGAWMRGI 123 A+A+GKP VLLPA + GRFQH A + D G L P D+EGKRVG+RS+ TTG W+RGI Sbjct: 69 QAKAYGKPYVLLPAPISGRFQHHCAGFNIDFGRLNPKDIEGKRVGVRSYAQTTGLWIRGI 128 Query: 124 LANDHGMNLDSINWVTFEEPHVAEYVD--STERAPKGKTIIQMLRDGELD-AVLGE-TSS 179 L +++G++LD + W+T + H+AEY D + R P G +I M+ GEL A+LGE Sbjct: 129 LRHEYGVDLDKVTWMTLIDGHLAEYQDPPNCVRLPAGSSIPDMMMKGELTAALLGEDMPK 188 Query: 180 DPAFKPLFADPAAEAARWYARHGVVPVNHLVVVTSRLATSRPDVVRSLYDLLKRGKA--E 237 D + L + A W+AR GVVP+NH+ VV ++ P VVR +Y ++ + +A E Sbjct: 189 DERARTLVPNAKDAAKAWFAREGVVPINHMFVVHQDVSRKHPQVVREIYRMVAQSRALTE 248 Query: 238 AGPPGMPDLVPFGVAANRKPLELMIDYSVQQALIPRRVTVDELFDGTTRDL 288 G P + P G+ ANRK L+L ID+++ Q +IPRR+ VDELFD T L Sbjct: 249 GGAPVV--FPPLGLEANRKGLQLAIDWALDQKIIPRRLQVDELFDDVTGSL 297