BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0202.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770478.1| transcriptional regulator [Bradyrhizobium japon... 347 7e-94 ref|YP_158313.1| TetR family transcriptional regulator [Aromatol... 125 7e-27 ref|NP_990915.1| hypothetical protein pEST4011_41 [Achromobacter... 118 1e-24 ref|YP_004089214.1| regulatory protein tetr [Asticcacaulis excen... 115 6e-24 ref|YP_555486.1| TetR family transcriptional regulator [Burkhold... 115 6e-24 >ref|NP_770478.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49103.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 347 bits (891), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 166/186 (89%), Positives = 178/186 (95%) Query: 40 VSVRDIAQAAGANPGSVTYHFRTKDGLLLEIYRRHCGPMNRRRSELLAAARRVRDLQDRL 99 +SVRDIAQAAGANPGSVTYHF+TKDGLLLEIYRRHCGPMN RRSELLAAARRVRDLQDRL Sbjct: 1 MSVRDIAQAAGANPGSVTYHFKTKDGLLLEIYRRHCGPMNLRRSELLAAARRVRDLQDRL 60 Query: 100 EAIVRAYVLPAFTSGSDLAGGGTRFTRLRAIMSAEGNEVVRKIIAQTFDDTSHAFIDAIH 159 EAIVRAYV+PAFTSGSDLAGGG RFTRLRA+MSAEGNEV RKIIAQTFDDTSHAFIDA+H Sbjct: 61 EAIVRAYVVPAFTSGSDLAGGGARFTRLRAVMSAEGNEVARKIIAQTFDDTSHAFIDAVH 120 Query: 160 ESLPHIPRTDLVWRSHFLLGALYYTLVTPERVTRLSRGSADGTDAGHAIEELVRATVAAL 219 ESLPHIPRTD+VWRSHFLLGALYY+LVTP+RV+RLSRG ADG+DA AIE+LV+ATVAA Sbjct: 121 ESLPHIPRTDIVWRSHFLLGALYYSLVTPDRVSRLSRGEADGSDAASAIEQLVQATVAAF 180 Query: 220 QAAPLD 225 QA PLD Sbjct: 181 QAPPLD 186 >ref|YP_158313.1| TetR family transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI07412.1| Transcriptional regulator, TetR family [Aromatoleum aromaticum EbN1] Length = 233 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 121/252 (48%), Gaps = 33/252 (13%) Query: 1 MVRKPARSDVKAAASRKPNMREAILAAAEELFSTYGFNAVSVRDIAQAAGANPGSVTYHF 60 M+ PA+S P R IL AAE LF +GF A S+R I AA AN +V YHF Sbjct: 1 MMTLPAKSPAA------PETRHRILDAAEVLFVEHGFEATSMRMITGAARANLAAVNYHF 54 Query: 61 RTKDGLLLEIYRRHCGPMNRRRSELLAAARRVRDLQDRLEA-----------IVRAYVLP 109 +KD L+ E++RR +NR+R L DRLEA IV AY P Sbjct: 55 GSKDALIQEVFRRRLTELNRQRLAAL----------DRLEADAGGAALKPSRIVEAYFGP 104 Query: 110 AFTSGSDLAGGGTRFTRLRAIMSAEGNEVVRKIIAQTFDDTSHAFIDAIHESLPHIPRTD 169 A +D GG F RL E N +RK +A+ + F A++ +LP +PR + Sbjct: 105 ALQLAADTEHGGHTFMRLLGRTYTEPNAFIRKFLAEEYAGVLERFRAALYRALPDVPREE 164 Query: 170 LVWRSHFLLGALYYTLVTPERVTRLSRGSADGTDAGHAIEELVRATVAALQAAPLDAGAP 229 ++WR HF++GA+ Y L + + +L G D D G + L+ + L+ APL P Sbjct: 165 ILWRFHFMMGAMSYALAGTDGL-QLFAGCFDDADPGRLMPRLMSFLLGGLR-APL----P 218 Query: 230 GPRMVPSANPGR 241 G PGR Sbjct: 219 GFEQACDEQPGR 230 >ref|NP_990915.1| hypothetical protein pEST4011_41 [Achromobacter denitrificans] gb|AAK81662.1| putative transcription factor [Burkholderia cepacia] gb|AAS49456.1| unknown [Achromobacter denitrificans] Length = 246 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 8/217 (3%) Query: 16 RKPNMREAILAAAEELFSTYGFNAVSVRDIAQAAGANPGSVTYHFRTKDGLLLEIYRRHC 75 RK + RE IL A+E LF+ +GF S+R++A AG N G + Y FR+K+ L E Y R Sbjct: 22 RKSDARENILRASERLFAEHGFTGCSLRNVADTAGVNQGMIHYFFRSKEALFQETYLRCG 81 Query: 76 GPMNRRRSELLAAARRVRDLQD-RLEAIVRAYVLPAF---TSGSDLAGGGTRFTRLRAIM 131 PM R LL A +LE +V ++ PAF SG G F R++A + Sbjct: 82 TPMVAERMRLLDAEEAAAKGGAIQLERLVEIFLTPAFRLAMSGE----SGRAFLRMQAHL 137 Query: 132 SAEGNEVVRKIIAQTFDDTSHAFIDAIHESLPHIPRTDLVWRSHFLLGALYYTLVTPERV 191 +G + ++ + +DD+S F+ A SLP + R D+ WR F+LGA Y L R+ Sbjct: 138 QLDGTQFGNELRQRLYDDSSSRFVAAFRRSLPDVSREDVSWRFIFMLGAYQYALADTGRI 197 Query: 192 TRLSRGSADGTDAGHAIEELVRATVAALQAAPLDAGA 228 +S G + ++ ++V AA++A L G+ Sbjct: 198 EVVSDSLCSGKNFAESLRQIVPFLAAAMRAPRLSVGS 234 >ref|YP_004089214.1| regulatory protein tetr [Asticcacaulis excentricus CB 48] gb|ADU15063.1| regulatory protein TetR [Asticcacaulis excentricus CB 48] Length = 235 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 7/209 (3%) Query: 15 SRKPNMREAILAAAEELFSTYGFNAVSVRDIAQAAGANPGSVTYHFRTKDGLLLEIYRRH 74 S P+ R+ +L AAE LFS +GF+ V+VR +AQAAG + Y+F +K GL ++ R Sbjct: 21 SDAPSRRDLVLDAAEALFSQHGFDGVTVRQVAQAAGVDVALPNYYFESKQGLYDAVFGRR 80 Query: 75 CGPMNRRRSELLAAARRVRDLQD--RLEAIVRAYVLPAFTSGSDLAGGGTRFTRLRAIMS 132 +N RR AA R V + + LE+I+RA+++P T + G + RL A ++ Sbjct: 81 ALVLNDRRE---AALRLVMESAEAPTLESILRAFIVPVQTMHAAADPGFRNYCRLVAQVN 137 Query: 133 AEGNEVVRKIIAQTFDDTSHAFIDAIHESLPHIPRTDLVWRSHFLLGALYYTLVTPERVT 192 + G V+ ++ FD FIDA+ LPH+ +L W H L GAL T+ + R+ Sbjct: 138 SSG--VLAPMMTTHFDRLILKFIDALRRVLPHVADRELYWGYHCLSGALTLTMASTGRID 195 Query: 193 RLSRGSADGTDAGHAIEELVRATVAALQA 221 LS G DA A E L+ + A QA Sbjct: 196 HLSNGLCRSDDAEDAYEHLISFNLGAFQA 224 >ref|YP_555486.1| TetR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE36136.1| transcriptional regulator, TetR family [Burkholderia xenovorans LB400] Length = 242 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 4/211 (1%) Query: 19 NMREAILAAAEELFSTYGFNAVSVRDIAQAAGANPGSVTYHFRTKDGLLLEIYRRHCGPM 78 N+RE IL AAE F+ +GF ++R++A A G +TYHF TK L E++ R + Sbjct: 29 NLREKILDAAEVDFADHGFAGATLREVANACGVTQALITYHFGTKHRLFEEVFLRRATRI 88 Query: 79 NRRRSELLAAARRVRDLQDRLEAIVRAYVLPAFTSGSDLAGGGTRFTRLRAIMSAEGNEV 138 + +R ELL + + + IVR+++ P T + GG F RL A + E E+ Sbjct: 89 SEQRLELLHQLAQ-NSQKPSVSDIVRSFLEPMLTLRR--SPGGRAFIRLHARLHTEPPEI 145 Query: 139 VRKIIAQTFDDTSHAFIDAIHESLPHIPRTDLVWRSHFLLGALYYTLVTPERVTRLSRGS 198 ++ +D+++HA++ A +LP +P DL WR ++GA Y R+ LS G+ Sbjct: 146 SYRLRGLAYDESTHAYVAAFRSALPEVPEKDLYWRVMLMIGAYLYAFSDSHRLEVLSEGA 205 Query: 199 ADGTDAGHAIEELVRATVAALQAAPLDAGAP 229 + DA +E+L V L AAP P Sbjct: 206 CNTADATETLEQLTAFIVGGL-AAPHSGKPP 235