BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0192.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242300.1| major facilitator superfamily D-glucarate pe... 482 e-134 ref|YP_001203686.1| major facilitator superfamily D-glucarate pe... 480 e-133 ref|NP_772509.1| glucarate transporter [Bradyrhizobium japonicum... 477 e-133 ref|YP_004351988.1| sugar ABC transporter permease [Pseudomonas ... 392 e-107 ref|YP_003975823.1| glucarate transporter [Bacillus atrophaeus 1... 390 e-106 >ref|YP_001242300.1| major facilitator superfamily D-glucarate permease [Bradyrhizobium sp. BTAi1] gb|ABQ38394.1| D-glucarate permease (MFS family) [Bradyrhizobium sp. BTAi1] Length = 445 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/267 (85%), Positives = 243/267 (91%) Query: 1 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYAVAQVPCGWLLDRFG 60 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSY +AQVP GWLLDRFG Sbjct: 22 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYVLAQVPGGWLLDRFG 81 Query: 61 SKWVYALSIIVWSIFTAMQGLVGFLSAGAAVVLLFGLRFLVGIAEAPSFPANARIVASWF 120 S+WVYA SI+VWSIFT MQG +GF S GAA+V LF LRFLVG+AEAPSFPANARIVA+WF Sbjct: 82 SRWVYACSIVVWSIFTLMQGWIGFFSGGAAIVALFALRFLVGLAEAPSFPANARIVAAWF 141 Query: 121 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHEYGWRHVFYVMGALGIVMGIAWIKTIYE 180 P NERGTASAFFNSGQYFATVIFAPLMGWIAHE+GWRHVF VMGALGI+MG+ WIKT+Y Sbjct: 142 PSNERGTASAFFNSGQYFATVIFAPLMGWIAHEFGWRHVFTVMGALGILMGLVWIKTMYG 201 Query: 181 PKEHPAINEAEFDYIKQGGALVDMDATKDGKAHDGGPRWDHIRQLLANRMMLGVYIGQYC 240 PKEHP +NEAE DYIK+GGALVDM+ +DGK GGP W HI QLL+NRMMLGVYIGQYC Sbjct: 202 PKEHPGVNEAELDYIKEGGALVDMEGAQDGKTASGGPTWSHIGQLLSNRMMLGVYIGQYC 261 Query: 241 INTLTYFFLTWFPVYLVKERGLSILXA 267 INTLTYFFLTWFPVYLVKERGLSIL A Sbjct: 262 INTLTYFFLTWFPVYLVKERGLSILQA 288 >ref|YP_001203686.1| major facilitator superfamily D-glucarate permease [Bradyrhizobium sp. ORS 278] emb|CAL75449.1| D-glucarate permease (MFS family) [Bradyrhizobium sp. ORS 278] Length = 451 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/271 (84%), Positives = 245/271 (90%), Gaps = 4/271 (1%) Query: 1 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYAVAQVPCGWLLDRFG 60 MLFLVTTVNYADRATLSIAGPAL+K+LHLDPVAMGYVFSAFGWSY +AQVP GWLLDRFG Sbjct: 24 MLFLVTTVNYADRATLSIAGPALAKDLHLDPVAMGYVFSAFGWSYVLAQVPGGWLLDRFG 83 Query: 61 SKWVYALSIIVWSIFTAMQGLVGFLSAGAAVVLLFGLRFLVGIAEAPSFPANARIVASWF 120 S+WVYA SI++WSIFT MQG +GFLS GAA+V LF LRFLVG+AEAPSFPANARIVA+WF Sbjct: 84 SRWVYACSIVIWSIFTMMQGWIGFLSGGAAIVALFALRFLVGLAEAPSFPANARIVAAWF 143 Query: 121 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHEYGWRHVFYVMGALGIVMGIAWIKTIYE 180 P NERGTASAFFNSGQYFATVIFAPLMGWIAHE+GWRHVF VMGALGI+MG+ WI+T+Y Sbjct: 144 PSNERGTASAFFNSGQYFATVIFAPLMGWIAHEFGWRHVFTVMGALGIIMGLVWIRTMYG 203 Query: 181 PKEHPAINEAEFDYIKQGGALVDM----DATKDGKAHDGGPRWDHIRQLLANRMMLGVYI 236 PKEHP INEAE DYIKQGGALVDM D T+DGK GGP W HI QLL+NRMMLGVYI Sbjct: 204 PKEHPGINEAELDYIKQGGALVDMEGAKDETRDGKTSQGGPTWSHIGQLLSNRMMLGVYI 263 Query: 237 GQYCINTLTYFFLTWFPVYLVKERGLSILXA 267 GQYCINTLTYFFLTWFPVYLVKERGLSIL A Sbjct: 264 GQYCINTLTYFFLTWFPVYLVKERGLSILQA 294 >ref|NP_772509.1| glucarate transporter [Bradyrhizobium japonicum USDA 110] dbj|BAC51134.1| gudP [Bradyrhizobium japonicum USDA 110] Length = 447 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 225/267 (84%), Positives = 247/267 (92%) Query: 1 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYAVAQVPCGWLLDRFG 60 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMG++FSAFGWSY +AQVP GWLLDR+G Sbjct: 23 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGWIFSAFGWSYVIAQVPGGWLLDRYG 82 Query: 61 SKWVYALSIIVWSIFTAMQGLVGFLSAGAAVVLLFGLRFLVGIAEAPSFPANARIVASWF 120 S+ VYA IIVWS+FT MQG VGFLSAGAA+V+LF LR LVG+AEAPSFPANARIVA+WF Sbjct: 83 SRLVYAFGIIVWSLFTLMQGWVGFLSAGAAIVVLFALRLLVGVAEAPSFPANARIVAAWF 142 Query: 121 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHEYGWRHVFYVMGALGIVMGIAWIKTIYE 180 PGNERGTASAFFNSGQYFATVIFAPLMGWIAH+YGWR+VF+VMGALG++MG+ WIKTIY Sbjct: 143 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHDYGWRYVFFVMGALGVIMGLVWIKTIYG 202 Query: 181 PKEHPAINEAEFDYIKQGGALVDMDATKDGKAHDGGPRWDHIRQLLANRMMLGVYIGQYC 240 PKEHP INEAEFDYIK+GGALVD+DA K+ +A G WDHIRQLL+NRMMLGVY+GQYC Sbjct: 203 PKEHPGINEAEFDYIKEGGALVDLDAPKEERAPQSGSGWDHIRQLLSNRMMLGVYLGQYC 262 Query: 241 INTLTYFFLTWFPVYLVKERGLSILXA 267 INTLTYFFLTWFPVYLVKERGLSIL A Sbjct: 263 INTLTYFFLTWFPVYLVKERGLSILQA 289 >ref|YP_004351988.1| sugar ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66984.1| putative sugar (glucarate) ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 454 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 215/267 (80%) Query: 1 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYAVAQVPCGWLLDRFG 60 MLFLVTT+NYADRAT++IAG +L K+L +D V +GY+FSAFGW+Y Q+P GWLLDRFG Sbjct: 16 MLFLVTTINYADRATIAIAGSSLQKDLGIDAVTLGYIFSAFGWAYVAGQIPGGWLLDRFG 75 Query: 61 SKWVYALSIIVWSIFTAMQGLVGFLSAGAAVVLLFGLRFLVGIAEAPSFPANARIVASWF 120 SK +YALSI WS+FT +QG VG AVV LF LRF+VG+AEAPSFP NARIVA+WF Sbjct: 76 SKKIYALSIFTWSLFTVLQGYVGEFGMSTAVVALFMLRFMVGLAEAPSFPGNARIVAAWF 135 Query: 121 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHEYGWRHVFYVMGALGIVMGIAWIKTIYE 180 P ERGTASA FNS QYFATV+FAPLMGWI + +GW+HVF VMG +GIV + W+K I+ Sbjct: 136 PTAERGTASAIFNSAQYFATVLFAPLMGWIVYRFGWQHVFIVMGVIGIVFSLIWLKVIHS 195 Query: 181 PKEHPAINEAEFDYIKQGGALVDMDATKDGKAHDGGPRWDHIRQLLANRMMLGVYIGQYC 240 P++HP INEAEF++I GA+VDMD K GP+WD+IRQLL NRMMLGVY+GQYC Sbjct: 196 PRQHPMINEAEFNHIAANGAMVDMDQDKGKDKKTDGPKWDYIRQLLTNRMMLGVYLGQYC 255 Query: 241 INTLTYFFLTWFPVYLVKERGLSILXA 267 IN +TYFFLTWFPVYLV+ERG++IL A Sbjct: 256 INGITYFFLTWFPVYLVQERGMTILKA 282 >ref|YP_003975823.1| glucarate transporter [Bacillus atrophaeus 1942] gb|ADP34892.1| glucarate transporter [Bacillus atrophaeus 1942] Length = 457 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 176/267 (65%), Positives = 216/267 (80%) Query: 1 MLFLVTTVNYADRATLSIAGPALSKELHLDPVAMGYVFSAFGWSYAVAQVPCGWLLDRFG 60 MLF+VT++NYADRATLSIAG A+ ++L LD VAMGYVFSAFGW+Y +AQ+P GWLLDRFG Sbjct: 24 MLFVVTSINYADRATLSIAGDAVQQDLGLDSVAMGYVFSAFGWAYVIAQLPGGWLLDRFG 83 Query: 61 SKWVYALSIIVWSIFTAMQGLVGFLSAGAAVVLLFGLRFLVGIAEAPSFPANARIVASWF 120 SK + ALSI WS FT +QG +GF SAG A++LLF LRFLVGI+EAPSFP N R+VASWF Sbjct: 84 SKTIIALSIFFWSFFTLLQGAIGFFSAGTAIILLFTLRFLVGISEAPSFPGNGRVVASWF 143 Query: 121 PGNERGTASAFFNSGQYFATVIFAPLMGWIAHEYGWRHVFYVMGALGIVMGIAWIKTIYE 180 P ERGTASAFFNS QYFA VIF+PLMGW+ H +GW VF VMG GI++ W+KT+YE Sbjct: 144 PSAERGTASAFFNSAQYFAIVIFSPLMGWLTHSFGWHSVFVVMGVAGILLTFVWLKTVYE 203 Query: 181 PKEHPAINEAEFDYIKQGGALVDMDATKDGKAHDGGPRWDHIRQLLANRMMLGVYIGQYC 240 PK+HP +N+AE +YI++GG L+ MD +++ +W +I+QLL NRM++GVYI QYC Sbjct: 204 PKKHPKVNQAELEYIEKGGGLISMDDSREESKQKKESKWPYIKQLLTNRMLIGVYIAQYC 263 Query: 241 INTLTYFFLTWFPVYLVKERGLSILXA 267 I TLTYFFLTWFPVYLV+ RG+SIL A Sbjct: 264 ITTLTYFFLTWFPVYLVQARGMSILEA 290