BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0182.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774219.1| hypothetical protein blr7579 [Bradyrhizobium ja...   117   6e-25
ref|YP_533882.1| hypothetical protein RPC_4037 [Rhodopseudomonas...    85   4e-15
ref|YP_485000.1| hypothetical protein RPB_1379 [Rhodopseudomonas...    81   6e-14
ref|YP_001993677.1| hypothetical protein Rpal_4711 [Rhodopseudom...    79   2e-13
ref|NP_949568.1| hypothetical protein RPA4232 [Rhodopseudomonas ...    79   2e-13

>ref|NP_774219.1| hypothetical protein blr7579 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52844.1| blr7579 [Bradyrhizobium japonicum USDA 110]
          Length = 113

 Score =  117 bits (293), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 71/113 (62%)

Query: 1   MHPAAKLQFARIVDEFARWRAIPEPERPPAPAWWWGPAFEMRDAAEPLPAAWSRRLRLPD 60
           MH AA+L+F R++DEF RW  +P  ER PAPAWWWGPA  + D  EP+  AW   L L +
Sbjct: 1   MHQAARLEFERVMDEFVRWHVVPGDERSPAPAWWWGPAMAVVDDHEPMSGAWCSELGLNE 60

Query: 61  GARFAEAALVLRQTLAGQDILPWPYDFSRKVASTDSDVRDLPVQPSDDSAFPP 113
           GA FA+ A  +      Q  L  P DF RK  +TD +VR+L  QPSDDSAF P
Sbjct: 61  GASFADGARTILALFVEQTSLTGPQDFPRKAEATDHEVRELHPQPSDDSAFQP 113


>ref|YP_533882.1| hypothetical protein RPC_4037 [Rhodopseudomonas palustris BisB18]
 gb|ABD89563.1| hypothetical protein RPC_4037 [Rhodopseudomonas palustris BisB18]
          Length = 127

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 1   MHPAAKLQFARIVDEFARWRAIPEPERPPAPAWWWGPAFEMRDAAEPLPAAWSRRLRLPD 60
           M  AA+ QF RIV E+A WR + + ER PA AWWWGPA  + D  E +P  + R L+LP 
Sbjct: 1   MLSAARFQFERIVREYAVWRTVDDRERSPAAAWWWGPALAVLDEPEAMPPDFCRALQLPP 60

Query: 61  GARFAEAALVLRQTLAGQDILPWPYDFSR------KVASTDSDVRDLPVQP 105
           G+ FA AA V    +A Q  LPWP +F R      + AS++   R  P QP
Sbjct: 61  GSTFARAASVFITAIADQTSLPWPDEFPRIRRRDDRGASSELTDRSAPSQP 111


>ref|YP_485000.1| hypothetical protein RPB_1379 [Rhodopseudomonas palustris HaA2]
 gb|ABD06089.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 108

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 53/93 (56%)

Query: 1  MHPAAKLQFARIVDEFARWRAIPEPERPPAPAWWWGPAFEMRDAAEPLPAAWSRRLRLPD 60
          MHPA   QF R+  EF+ WRA+P+ +R PA AWWWG A E+R   EP+PA       LP 
Sbjct: 1  MHPARSFQFKRLAQEFSAWRAVPDNQRAPAAAWWWGTAIELRSETEPMPAELRSAFGLPL 60

Query: 61 GARFAEAALVLRQTLAGQDILPWPYDFSRKVAS 93
          GA +AEAA  L   +A Q  L    +F R   S
Sbjct: 61 GASYAEAATRLMARIAEQKSLAPSNEFPRNRKS 93


>ref|YP_001993677.1| hypothetical protein Rpal_4711 [Rhodopseudomonas palustris TIE-1]
 gb|ACF03202.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 108

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query: 1  MHPAAKLQFARIVDEFARWRAIPEPERPPAPAWWWGPAFEMRDAAEPLPAAWSRRLRLPD 60
          MHPA  ++F R+  E A WRA+P  +R PAP WWWGPA  +R A +PL     RR  LP 
Sbjct: 1  MHPAQHIEFNRLAQEMAAWRAVPADDRSPAPGWWWGPAMALRHAKQPLSPEDCRRFGLPL 60

Query: 61 GARFAEAALVLRQTLAGQDILPWPYDF 87
          GA FA+A   +   LA Q  L  P +F
Sbjct: 61 GASFADAGNKVMAFLAAQRSLTRPSEF 87


>ref|NP_949568.1| hypothetical protein RPA4232 [Rhodopseudomonas palustris CGA009]
 emb|CAE29673.1| hypothetical protein RPA4232 [Rhodopseudomonas palustris CGA009]
          Length = 108

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 51/87 (58%)

Query: 1  MHPAAKLQFARIVDEFARWRAIPEPERPPAPAWWWGPAFEMRDAAEPLPAAWSRRLRLPD 60
          MHPA  ++F R+  E A WRA+P  +R PAP WWWGPA  +R A +PL     RR  LP 
Sbjct: 1  MHPAQHIEFNRLAQEMAAWRAVPADDRSPAPGWWWGPAMALRHAKQPLSPEDCRRFGLPL 60

Query: 61 GARFAEAALVLRQTLAGQDILPWPYDF 87
          GA FA+A   +   LA Q  L  P +F
Sbjct: 61 GASFADAGNKVMAFLAAQRSLTRPSEF 87