BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0157.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769482.1| hypothetical protein blr2842 [Bradyrhizobium ja... 505 e-141 ref|YP_001525262.1| sugar phosphate isomerases [Azorhizobium cau... 438 e-121 ref|YP_004619494.1| hypothetical protein Rta_23770 [Ramlibacter ... 389 e-106 ref|YP_004350548.1| Xylose isomerase domain protein TIM barrel [... 370 e-100 ref|YP_004156247.1| xylose isomerase domain-containing protein [... 366 2e-99 >ref|NP_769482.1| hypothetical protein blr2842 [Bradyrhizobium japonicum USDA 110] dbj|BAC48107.1| blr2842 [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/287 (84%), Positives = 264/287 (91%) Query: 1 MRDFSNDHRWLSLNTATVRRQGDLLAIVEACARRGIRAIDPWRDQVAAVGLDRAVRAVKD 60 MRDFS+DHRWLSLNTATVR+QGDL+AI++ACA+ GIRAIDPWRDQVA+VGLDRA RAV+D Sbjct: 1 MRDFSSDHRWLSLNTATVRKQGDLVAIIDACAKHGIRAIDPWRDQVASVGLDRAARAVRD 60 Query: 61 AGLDLSGYCRGGMFTADGAHRSEARDDNRRAVDEAAALGASCIVLVVGGLPQYSRPGSAD 120 AGL+LSGYCRGGMFT+D + R E RDDNRR VDEA ALGA CIVLVVGGLPQYSRPGS Sbjct: 61 AGLELSGYCRGGMFTSDASRRGEVRDDNRRCVDEAKALGAPCIVLVVGGLPQYSRPGSEP 120 Query: 121 SKDIAAARHQVHDGIAEMLDYAKLAKLPLAIEPLHPAYAADRACVNTTKHALDICDALDP 180 SKDIAAAR QV + +A+MLDYA+ A LPLAIEPLHPAYAADRACVNTTK ALDICD LDP Sbjct: 121 SKDIAAARGQVEEALADMLDYARQAGLPLAIEPLHPAYAADRACVNTTKQALDICDRLDP 180 Query: 181 GRTGAIGVALDVYHIWWDPELMGQIARAGQDRLLAFHVCDWLVPTKDILNDRGMMGDGVI 240 GRTG +GVALDVYHIWWDPELM QIARAG+DRLLAFHVCDWLVPT+DILNDRGMMGDGVI Sbjct: 181 GRTGMLGVALDVYHIWWDPELMSQIARAGRDRLLAFHVCDWLVPTRDILNDRGMMGDGVI 240 Query: 241 DIRSVRAAVEAQGFAGYSEIEIFSNDWWGRPLDEVLRTCIERHRTVV 287 DI+SVR AVEAQGFAGYSEIEIFSNDWW +P+DEVLRTCI RHRTVV Sbjct: 241 DIKSVRKAVEAQGFAGYSEIEIFSNDWWAKPMDEVLRTCITRHRTVV 287 >ref|YP_001525262.1| sugar phosphate isomerases [Azorhizobium caulinodans ORS 571] dbj|BAF88344.1| sugar phosphate isomerases [Azorhizobium caulinodans ORS 571] Length = 300 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/287 (72%), Positives = 239/287 (83%) Query: 1 MRDFSNDHRWLSLNTATVRRQGDLLAIVEACARRGIRAIDPWRDQVAAVGLDRAVRAVKD 60 +RDFS DHR LS+NTATVRRQGDL I+EACAR IRAI PWRDQVA +GL RAV AVK Sbjct: 14 LRDFSADHRLLSINTATVRRQGDLATIIEACARAQIRAISPWRDQVAHIGLPRAVEAVKA 73 Query: 61 AGLDLSGYCRGGMFTADGAHRSEARDDNRRAVDEAAALGASCIVLVVGGLPQYSRPGSAD 120 GL LSGYCRGGMF AD A E RDDNRRAVDEA ALGASC+VLVVGGLPQY+RPGSA Sbjct: 74 TGLALSGYCRGGMFPADPARLPEVRDDNRRAVDEAEALGASCLVLVVGGLPQYARPGSAP 133 Query: 121 SKDIAAARHQVHDGIAEMLDYAKLAKLPLAIEPLHPAYAADRACVNTTKHALDICDALDP 180 SKDI AAR V DGI +L+YA+ A +PLAIEPLHP YAADRACVNT ALDICD LDP Sbjct: 134 SKDIGAARAMVEDGIGTLLEYARSAHMPLAIEPLHPMYAADRACVNTMGQALDICDRLDP 193 Query: 181 GRTGAIGVALDVYHIWWDPELMGQIARAGQDRLLAFHVCDWLVPTKDILNDRGMMGDGVI 240 R+G +GVALDV+H+WWDP+L QI RAG+DRLLA+HVCDWLVP D+LNDRGMMGDGVI Sbjct: 194 ERSGMLGVALDVFHVWWDPDLSAQIVRAGRDRLLAYHVCDWLVPMADMLNDRGMMGDGVI 253 Query: 241 DIRSVRAAVEAQGFAGYSEIEIFSNDWWGRPLDEVLRTCIERHRTVV 287 D++++RA VEAQG+ G++E+EIFS WW +P++EVL TCI RHR+VV Sbjct: 254 DLKAIRAQVEAQGYQGFAEVEIFSEHWWAKPMEEVLGTCISRHRSVV 300 >ref|YP_004619494.1| hypothetical protein Rta_23770 [Ramlibacter tataouinensis TTB310] gb|AEG93475.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 299 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/300 (67%), Positives = 233/300 (77%), Gaps = 14/300 (4%) Query: 1 MRDFSNDHRWLSLNTATVRR-QGDLLAI---VEACARRGIRAIDPWRDQVAAVGLDRAVR 56 MRDFS DHRWLS+NTATVR+ +G L + +EACARRGIRAI PWRDQVAA GL R Sbjct: 1 MRDFSQDHRWLSINTATVRKSRGQDLPLPDTIEACARRGIRAISPWRDQVAAAGLANVSR 60 Query: 57 AVKDAGLDLSGYCRGGMF-TADGAHRSEARDDNRRAVDEAAALGASCIVLVVGGLPQYSR 115 V+ GL LSGYCRGGMF T DGA ARDDNRRAVDEA LGA+C+VLVVG LP + Sbjct: 61 LVRAHGLQLSGYCRGGMFTTTDGAGLRAARDDNRRAVDEACELGAACLVLVVGALPG-AL 119 Query: 116 PGSADSKDIAAARHQVHDGIAEMLDYAKLAKLPLAIEPLHPAYAADRACVNTTKHALDIC 175 G A KD+A AR QV DGIAE+L+YA+ A++PLAIEPLHP YAADRACVNT + ALD+C Sbjct: 120 QGKAAHKDVALARSQVRDGIAELLEYARQARMPLAIEPLHPMYAADRACVNTMEQALDLC 179 Query: 176 DALDPGRT-------GAIGVALDVYHIWWDPELMGQIARAGQDRLLAFHVCDWLVPTKDI 228 +ALDP R+ A+GVA+DVYH+WWDP+L QIARAG++RLLAFHVCDWL PT D+ Sbjct: 180 EALDPMRSAHGERGAAALGVAVDVYHVWWDPKLEAQIARAGRERLLAFHVCDWLTPTTDL 239 Query: 229 LNDRGMMGDGVIDIRSVRAAVEAQGFAGYSEIEIFSN-DWWGRPLDEVLRTCIERHRTVV 287 LNDRGMMGDGVIDI +R VEAQGFAGYSE+EIFS +WW R EVL TCI RHR+ V Sbjct: 240 LNDRGMMGDGVIDIPRIRGWVEAQGFAGYSEVEIFSTGNWWQREHGEVLDTCIARHRSAV 299 >ref|YP_004350548.1| Xylose isomerase domain protein TIM barrel [Burkholderia gladioli BSR3] gb|AEA65036.1| Xylose isomerase domain protein TIM barrel [Burkholderia gladioli BSR3] Length = 283 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/289 (66%), Positives = 224/289 (77%), Gaps = 8/289 (2%) Query: 1 MRDFSNDHRWLSLNTATVRRQGDLLAIVEACARRGIRAIDPWRDQVAAVGLDRAVRAVKD 60 MRD S DHRWLS+NTATVR Q L I+E C RR IRAI PWRDQVAAVG R ++D Sbjct: 1 MRDLSQDHRWLSINTATVR-QWPLDRIIEECGRRQIRAISPWRDQVAAVGSASVARLLRD 59 Query: 61 AGLDLSGYCRGGMFTADGA-HRSEARDDNRRAVDEAAALGASCIVLVVGGLPQYSRPGSA 119 G+ LSGYCRGGMF A A R +A DDNRRA+DEA L A C+VLVVGGLP GSA Sbjct: 60 TGIVLSGYCRGGMFPASTALGRQQAIDDNRRAIDEARELNAPCLVLVVGGLPA----GSA 115 Query: 120 DSKDIAAARHQVHDGIAEMLDYAKLAKLPLAIEPLHPAYAADRACVNTTKHALDICDALD 179 SKDI AAR QV DGIA++LDYA+ +PLAIEPLHP YAADRACVNT + ALD+CD LD Sbjct: 116 -SKDIGAAREQVRDGIAQILDYARSVHMPLAIEPLHPMYAADRACVNTLEQALDLCDELD 174 Query: 180 PGRTGAIGVALDVYHIWWDPELMGQIARAGQDRLLAFHVCDWLVPTKDILNDRGMMGDGV 239 P +TGA+GVA+DVYH+WWDP+L QI RAG+ RLLAFHVCDWLVPT+D+LNDRGMMGDGV Sbjct: 175 PEKTGALGVAVDVYHVWWDPKLKTQIDRAGRTRLLAFHVCDWLVPTRDLLNDRGMMGDGV 234 Query: 240 IDIRSVRAAVEAQGFAGYSEIEIFSNDWWG-RPLDEVLRTCIERHRTVV 287 IDI ++R VEA G+ G++E+EIFS++ WG R +VL CIERH + V Sbjct: 235 IDIPTIRTWVEAAGYEGFNEVEIFSSENWGRRDGGDVLDICIERHASAV 283 >ref|YP_004156247.1| xylose isomerase domain-containing protein [Variovorax paradoxus EPS] gb|ADU38136.1| Xylose isomerase domain-containing protein TIM barrel [Variovorax paradoxus EPS] Length = 292 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 182/293 (62%), Positives = 222/293 (75%), Gaps = 7/293 (2%) Query: 1 MRDFSNDHRWLSLNTATVRRQG----DLLAIVEACARRGIRAIDPWRDQVAAVGLDRAVR 56 MRDFS +H WLS+NTATVR+Q L I++ CA RGIRAI PWRDQVAAVGLD+ + Sbjct: 1 MRDFSQNHDWLSINTATVRKQSGAEVPLDRIIDQCAERGIRAISPWRDQVAAVGLDKVAK 60 Query: 57 AVKDAGLDLSGYCRGGMFTA-DGAHRSEARDDNRRAVDEAAALGASCIVLVVGGLPQYSR 115 +K G+ LSGYCRGG F A D A A DNRRA+DEA L A C+VLVVG LP + Sbjct: 61 QLKAHGIGLSGYCRGGFFPAPDAAGLEAALGDNRRAIDEAKTLDAPCLVLVVGALPG-AL 119 Query: 116 PGSADSKDIAAARHQVHDGIAEMLDYAKLAKLPLAIEPLHPAYAADRACVNTTKHALDIC 175 G A DIA AR++V DGIA L+YA+ +PLAIEPLHP AADRAC+NT +HALD+C Sbjct: 120 DGKAAYTDIARARNEVRDGIAASLEYAREVGMPLAIEPLHPMQAADRACINTLEHALDLC 179 Query: 176 DALDPGRTGAIGVALDVYHIWWDPELMGQIARAGQDRLLAFHVCDWLVPTKDILNDRGMM 235 D LD G++G +GVALD+YH+WWDP+L QIARAG++RLLA+HVCDWL PT+D+L+DRGMM Sbjct: 180 DELDAGKSGMLGVALDIYHVWWDPKLQQQIARAGRERLLAYHVCDWLTPTRDLLSDRGMM 239 Query: 236 GDGVIDIRSVRAAVEAQGFAGYSEIEIFSN-DWWGRPLDEVLRTCIERHRTVV 287 GDGV++++ +R VE GFAG+SE+EIFSN DWW RP E L CIERHR+ V Sbjct: 240 GDGVVELKKIRGWVEEAGFAGFSEVEIFSNLDWWQRPGAETLDVCIERHRSAV 292