BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0138.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01047462.1| possible phage-related integrase [Nitrobacter... 431 e-119 ref|YP_004108461.1| integrase family protein [Rhodopseudomonas p... 201 9e-50 ref|YP_004553160.1| integrase family protein [Sphingobium chloro... 177 1e-42 ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroide... 165 8e-39 ref|ZP_08412976.1| phage-related integrase [Rhodobacter sphaeroi... 164 1e-38 >ref|ZP_01047462.1| possible phage-related integrase [Nitrobacter sp. Nb-311A] gb|EAQ34567.1| possible phage-related integrase [Nitrobacter sp. Nb-311A] Length = 411 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/270 (75%), Positives = 235/270 (87%) Query: 1 VKRSQIVTMLDHVEDEAGPVMADRVLAHVRKAFNWQAARDDEFKSPIVRGMARTKPKERA 60 +KR QIV +LD VED+AGPVMADRVLAHVRKAFNWQAARDD+F SPIVRGMARTKPKERA Sbjct: 142 LKRRQIVELLDAVEDKAGPVMADRVLAHVRKAFNWQAARDDDFLSPIVRGMARTKPKERA 201 Query: 61 RKRTLTDEEIRDVWKALESADVPACYPRYVKSLLVLATRRNESSEMNSAEIDGDLWTIPG 120 R+R LTD+EIRD+W+ALE+ADVP+CYPRYVK LL+ TRRNES++MN+AE++GDLWTIPG Sbjct: 202 RQRVLTDDEIRDIWQALETADVPSCYPRYVKMLLLTMTRRNESADMNAAEVEGDLWTIPG 261 Query: 121 ERYKTKLDHVVPLTDQAKALIGAKPEGFKGNSWFVFSTTEGKRPFSGFSKAKKDLDIAVA 180 +RYK KLDHV+PL+ AKALIG KP+ FKGN WFVFSTT+GKRPFSGFSKAK LD+ +A Sbjct: 262 KRYKNKLDHVIPLSPDAKALIGEKPKRFKGNDWFVFSTTDGKRPFSGFSKAKVSLDLEIA 321 Query: 181 KIRKAEKREAMPRWTLHDLRRTARSLMSRAKVPADHAERVLGHVIGGVRETYDRYEYLDE 240 K RKAE R MP WTLHDLRRTAR+LMSRAKVP DHAER +GHVI GVR TYDRY +LDE Sbjct: 322 KRRKAEGRARMPHWTLHDLRRTARTLMSRAKVPEDHAERAMGHVIAGVRGTYDRYSFLDE 381 Query: 241 KRDALEKLAGLIELILKPPADNVVQFEAAK 270 KR+A +KLA L+ +ILKP A NV+ +AK Sbjct: 382 KREAFQKLADLVAIILKPRAGNVINIASAK 411 >ref|YP_004108461.1| integrase family protein [Rhodopseudomonas palustris DX-1] gb|ADU43728.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 394 Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 155/259 (59%), Gaps = 15/259 (5%) Query: 1 VKRSQIVTMLDHVEDEAGPVMADRVLAHVRKAFNWQAARDDEFKSPIVRGMARTKPKERA 60 ++RS + +LD VED+ G ADRVL VR NWQA R D+++ PIV+GM R +P ER Sbjct: 137 IRRSDVTALLDDVEDDHGARSADRVLTIVRSIMNWQATRSDDYQPPIVKGMRRQEPAERV 196 Query: 61 RKRTLTDEEIRDVWKALESADVPACYPRYVKSLLVLATRRNESSEMNSAEIDGD-LWTIP 119 R R LTD E+R+VW A+V + +V+ L+ A RR + M + D WTIP Sbjct: 197 RTRILTDAELREVWN---QAEVSGTFGSFVRIALLTAQRRAKVLTMRWENVGDDGKWTIP 253 Query: 120 GERYKTKLDHVVPLTDQAKALIGAKPEGFKGNSWFVFSTTEGKRPFSGFSKAKKDLDIAV 179 E + + L +A +I A+P G++ FVF++ P +GF+ K+D D + Sbjct: 254 QEHREKASAQELMLPPRALDIIRAQPH--LGDNPFVFASARTDGPINGFANMKRDFDARL 311 Query: 180 AKIRKAEKREAMPRWTLHDLRRTARSLMSRAKVPADHAERVLGHVIGGVRETYDRYEYLD 239 + + WT+HDLRRTARSLMSRA VP +HAER LGHVI GV YD+++Y D Sbjct: 312 SGV---------GHWTIHDLRRTARSLMSRAGVPREHAERTLGHVIAGVEGIYDQHKYFD 362 Query: 240 EKRDALEKLAGLIELILKP 258 EK + L KLA LI++I++P Sbjct: 363 EKAEVLRKLAALIDVIVQP 381 >ref|YP_004553160.1| integrase family protein [Sphingobium chlorophenolicum L-1] gb|AEG48654.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 467 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/269 (41%), Positives = 151/269 (56%), Gaps = 12/269 (4%) Query: 1 VKRSQIVTMLDHVEDEAGPVMADRVLAHVRKAFNWQAARDDEFKSPIVRGMARTKPKERA 60 + R + +LD ++D G AD VLA + FNW AAR D+F SPIVRGM RTK ER Sbjct: 188 ITRRDVTELLDTIQDNNGATQADAVLAQLSSMFNWYAARGDDFVSPIVRGMKRTKSSERK 247 Query: 61 RKRTLTDEEIRDVWKALESADVPACYPRYVKSLLVLATRRNESSEMNSAEIDGD-LWTIP 119 RKR L+DEEIR W+A + +V + + + LL+ RR + M+ + D LWTIP Sbjct: 248 RKRILSDEEIRIFWQACGTQEV---FGVFCQLLLLTLQRREKLRLMHRDYVTSDGLWTIP 304 Query: 120 GERYKTKLDHVVPLTDQAKALIGAKPEGFKGNSWFVFSTTEGKRPFSGFSKAKKDLDIAV 179 E + V L+ A ++ +P FVF P +GF+ AK +LD + Sbjct: 305 TEDREKGNAEYVRLSPMAMQIVKKQPT--TPTRPFVFQGRLAG-PINGFTDAKAELDAKM 361 Query: 180 AKIRKAEKREAMPRWTLHDLRRTARSLMSRAKVPADHAERVLGHVIGGVRETYDRYEYLD 239 +I +P W LHDLRRT ++LM RA V +ERVLGHVI GV YD+++YL Sbjct: 362 EEIAG----HPIPHWVLHDLRRTGKTLMIRAGVSPHVSERVLGHVIPGVEGVYDQHDYLA 417 Query: 240 EKRDALEKLAGLIELILKPPADNVVQFEA 268 EK +AL +LA L+ IL P DNVV +A Sbjct: 418 EKTEALRQLASLVARILN-PKDNVVPMKA 445 >ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroides 2.4.1] gb|ABA79388.1| possible phage-related integrase [Rhodobacter sphaeroides 2.4.1] Length = 413 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 151/276 (54%), Gaps = 16/276 (5%) Query: 1 VKRSQIVTMLDHVEDEAGPVMADRVLAHVRKAFNWQAARDDEFKSPIVRGMARTKP--KE 58 + + ++ +LD + D V A+RV A++ K F W RD SP A KP KE Sbjct: 143 IGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSP----AAGVKPAGKE 198 Query: 59 RARKRTLTDEEIRDVWKALESADVPACYPRYVKSLLVLATRRNESSEMNSAEIDGDLWTI 118 +R R LTD+EIR W A E+ P + + K LL+ R NE ++M +EI GDLW + Sbjct: 199 TSRARVLTDDEIRWFWTACEAEGFP--WGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHL 256 Query: 119 PGERYKTKLDHVVPLTDQAKALIGA--KPEGFKGNSWFVFSTTEGKRPFSGFSKAKKDLD 176 +R K H VPLT +A + + +G F+F+TT G+ P SGF KA+ L Sbjct: 257 TADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGRVRFIFTTT-GRTPVSGFFKARAVLA 315 Query: 177 IAVAKIRKAEKREA--MPRWTLHDLRRTARSLMSRAKVPADHAERVLGHVI---GGVRET 231 A+ I + E+ E +PRWT HDLRRTA + M+R +P E VL HV GG+ Sbjct: 316 EAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAV 375 Query: 232 YDRYEYLDEKRDALEKLAGLIELILKPPADNVVQFE 267 Y R++Y DEKR ALE A + +++ ADNVV+ + Sbjct: 376 YQRHDYADEKRQALEAWARFVLSLVEGEADNVVRLQ 411 >ref|ZP_08412976.1| phage-related integrase [Rhodobacter sphaeroides WS8N] gb|EGJ21681.1| phage-related integrase [Rhodobacter sphaeroides WS8N] Length = 414 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 152/279 (54%), Gaps = 16/279 (5%) Query: 1 VKRSQIVTMLDHVEDEAGPVMADRVLAHVRKAFNWQAARDDEFKSPIVRGMARTKP--KE 58 + + ++ +LD + D V A+RV A++ K F W RD SP A KP KE Sbjct: 143 IGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSP----AAGVKPAGKE 198 Query: 59 RARKRTLTDEEIRDVWKALESADVPACYPRYVKSLLVLATRRNESSEMNSAEIDGDLWTI 118 +R R LTD+EIR W A E+ P + + K LL+ R NE ++M +EI GDLW + Sbjct: 199 TSRARVLTDDEIRWFWTACEAEGFP--WGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHL 256 Query: 119 PGERYKTKLDHVVPLTDQAKALIG--AKPEGFKGNSWFVFSTTEGKRPFSGFSKAKKDLD 176 +R K H VPLT +A + + +G + F+F+TT G+ P SGF KA+ L Sbjct: 257 TADRTKNGRAHDVPLTGAVRAALDDVERVTDGEGRARFIFTTT-GRTPVSGFFKARAVLA 315 Query: 177 IAVAKIRKAEKREA--MPRWTLHDLRRTARSLMSRAKVPADHAERVLGHVI---GGVRET 231 A+ I + E+ E +PRWT HDLRRTA + M+R +P E VL HV GG+ Sbjct: 316 EAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAV 375 Query: 232 YDRYEYLDEKRDALEKLAGLIELILKPPADNVVQFEAAK 270 Y R++Y DEKR ALE A + +++ DNVV+ A+ Sbjct: 376 YQRHDYADEKRQALEAWARFVLSLVEGKEDNVVRLAEAR 414