BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0122.p         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001944940.2| PREDICTED: dynactin subunit 1-like isoform 1...    37   1.1  
ref|XP_003244620.1| PREDICTED: dynactin subunit 1-like isoform 2...    37   1.3  
gb|EGT57708.1| hypothetical protein CAEBREN_26356 [Caenorhabditi...    35   3.1  
ref|YP_004599084.1| hypothetical protein HBZC1_p0590 [Helicobact...    35   3.3  
gb|EGT57677.1| hypothetical protein CAEBREN_07092 [Caenorhabditi...    35   3.5  

>ref|XP_001944940.2| PREDICTED: dynactin subunit 1-like isoform 1 [Acyrthosiphon pisum]
          Length = 1287

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 18  DQNIRELQEWLRRAWQQLADPSLTAFSRRELRNQMKQCNADLRVQL--QAASK 68
           + NIRE  +   RA + LAD SL     R+L N++++ N DL+ QL  ++ASK
Sbjct: 504 NANIRECVKEKERALESLADRSLVIVKFRDLVNELREQNQDLQTQLMRESASK 556


>ref|XP_003244620.1| PREDICTED: dynactin subunit 1-like isoform 2 [Acyrthosiphon pisum]
          Length = 1337

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 18  DQNIRELQEWLRRAWQQLADPSLTAFSRRELRNQMKQCNADLRVQL--QAASK 68
           + NIRE  +   RA + LAD SL     R+L N++++ N DL+ QL  ++ASK
Sbjct: 554 NANIRECVKEKERALESLADRSLVIVKFRDLVNELREQNQDLQTQLMRESASK 606


>gb|EGT57708.1| hypothetical protein CAEBREN_26356 [Caenorhabditis brenneri]
          Length = 838

 Score = 35.4 bits (80), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 14/69 (20%)

Query: 2  GFGGMTQPDVFDQKVLDQNIRELQEWLRRAWQQLADPSLTAFSRRELRNQMKQCNADLRV 61
          GFG M+  D+     L+  IR LQE L               S RELRN++++  ADL V
Sbjct: 24 GFGSMSVADLGSLTRLEDKIRLLQEDLE--------------SERELRNRIERERADLSV 69

Query: 62 QLQAASKRM 70
          QL A + R+
Sbjct: 70 QLIALTDRL 78


>ref|YP_004599084.1| hypothetical protein HBZC1_p0590 [Helicobacter bizzozeronii CIII-1]
 emb|CCB80939.1| hypothetical protein HBZC1_p0590 [Helicobacter bizzozeronii CIII-1]
          Length = 235

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 26  EWLRRAWQQLADPSLTAF--SRRELRNQMKQCNADLRVQLQAASKRMLVPPASSGRTFAK 83
           +W +    + A  ++TAF   RR+ R  +K+CNA LR Q Q A KR +    +  +  AK
Sbjct: 172 KWYKNVCFKFAWDNITAFLQERRDKRENLKECNARLRAQKQEALKRHIAYSFAMAKKGAK 231


>gb|EGT57677.1| hypothetical protein CAEBREN_07092 [Caenorhabditis brenneri]
          Length = 528

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 14/69 (20%)

Query: 2  GFGGMTQPDVFDQKVLDQNIRELQEWLRRAWQQLADPSLTAFSRRELRNQMKQCNADLRV 61
          GFG M+  D+     L+  IR LQE L               S RELRN++++  ADL V
Sbjct: 24 GFGSMSVADLGSLTRLEDKIRLLQEDLE--------------SERELRNRIERERADLSV 69

Query: 62 QLQAASKRM 70
          QL A + R+
Sbjct: 70 QLIALTDRL 78