BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0118.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771317.1| hypothetical protein blr4677 [Bradyrhizobium ja...    69   2e-10
ref|YP_001205955.1| hypothetical protein BRADO3976 [Bradyrhizobi...    64   5e-09
ref|YP_001240297.1| hypothetical protein BBta_4347 [Bradyrhizobi...    62   2e-08
ref|ZP_01047470.1| hypothetical protein NB311A_06141 [Nitrobacte...    60   1e-07
ref|YP_318406.1| hypothetical protein Nwi_1793 [Nitrobacter wino...    55   2e-06

>ref|NP_771317.1| hypothetical protein blr4677 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49942.1| blr4677 [Bradyrhizobium japonicum USDA 110]
          Length = 199

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 41/42 (97%)

Query: 18  FQVVASAPGFNADIAMRTSGNRQSVTIRADNQFRGANITLSK 59
           F+VVASA GFNA+I++RTSGN+Q+VT+RAD+QFRGANI++S+
Sbjct: 158 FEVVASAAGFNANISLRTSGNKQTVTMRADSQFRGANISMSR 199


>ref|YP_001205955.1| hypothetical protein BRADO3976 [Bradyrhizobium sp. ORS 278]
 emb|CAL77730.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 144

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 38/43 (88%)

Query: 17  NFQVVASAPGFNADIAMRTSGNRQSVTIRADNQFRGANITLSK 59
           NFQ+VA+  GFNA+IA+ T GN+QSV+IRAD+QFR ANI+LS+
Sbjct: 102 NFQLVATTAGFNANIALATRGNKQSVSIRADSQFRAANISLSR 144


>ref|YP_001240297.1| hypothetical protein BBta_4347 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36391.1| hypothetical protein BBta_4347 [Bradyrhizobium sp. BTAi1]
          Length = 144

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 17  NFQVVASAPGFNADIAMRTSGNRQSVTIRADNQFRGANITLSK 59
           NFQ+VA+  GFNA+IA+ T GN+QSV+IRAD+QFR A I+LS+
Sbjct: 102 NFQLVATTAGFNANIALATRGNKQSVSIRADSQFRAATISLSR 144


>ref|ZP_01047470.1| hypothetical protein NB311A_06141 [Nitrobacter sp. Nb-311A]
 gb|EAQ34575.1| hypothetical protein NB311A_06141 [Nitrobacter sp. Nb-311A]
          Length = 165

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%)

Query: 3   RNEPQHQRHPAGXGNFQVVASAPGFNADIAMRTSGNRQSVTIRADNQFRGANITLSK 59
           RN        AG G F V  SAP F A + ++T+GNRQ V IR+D QFRGA+I+LS+
Sbjct: 108 RNVSGTLEGQAGNGQFNVDVSAPAFTAKLKLKTNGNRQDVVIRSDGQFRGASISLSR 164


>ref|YP_318406.1| hypothetical protein Nwi_1793 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05054.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 165

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 3   RNEPQHQRHPAGXGNFQVVASAPGFNADIAMRTSGNRQSVTIRADNQFRGANITLSK 59
           RN        AG G F V  SAP F A + ++T+GNRQ V I +D QF+GA+I+LS+
Sbjct: 108 RNVGGTLEGRAGNGQFNVDVSAPAFTAKLKLKTNGNRQDVVISSDGQFKGASISLSR 164