BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0116.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771319.1| hypothetical protein blr4679 [Bradyrhizobium ja... 429 e-118 ref|YP_486479.1| hypothetical protein RPB_2866 [Rhodopseudomonas... 418 e-115 ref|YP_004109174.1| hypothetical protein Rpdx1_2858 [Rhodopseudo... 412 e-113 ref|YP_569736.1| hypothetical protein RPD_2606 [Rhodopseudomonas... 397 e-108 ref|YP_001991906.1| hypothetical protein Rpal_2923 [Rhodopseudom... 392 e-107 >ref|NP_771319.1| hypothetical protein blr4679 [Bradyrhizobium japonicum USDA 110] dbj|BAC49944.1| blr4679 [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/291 (72%), Positives = 245/291 (84%) Query: 1 MDRTPSKTRAALWMSGWLALMLIVAVAGREATREVNVFQLMAVRGALGFAMLYPLIHING 60 M PSKT AALWM+GWL+L L++AVAGREA RE+NVFQ+M VR LG MLYP+I G Sbjct: 1 MTTPPSKTMAALWMAGWLSLTLVMAVAGREAVREMNVFQVMEVRSLLGLCMLYPMIRRAG 60 Query: 61 GFAIVKTARVHVHIARNLIHFCAQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLGE 120 GF ++T R+ HIARNLIH+ +QLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFL E Sbjct: 61 GFGTLRTRRLPQHIARNLIHYVSQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLSE 120 Query: 121 RMTAWKIVAIVLGLVGVFVIVRPAAGAINPGQLIALAAAVGFGISVAVVKSLTRTEQTLT 180 RMT+WKI AIVLGLVGV VIVRPA G IN GQLIAL AAVGFG+S+A+VKSLTRTE L Sbjct: 121 RMTSWKIAAIVLGLVGVIVIVRPATGEINQGQLIALGAAVGFGVSMALVKSLTRTESALA 180 Query: 181 IMFWMLVVQSLASIGPALYVWTWPPLSTWGWLAVIAFCGTFSHYCMARALLHADATVVIP 240 ++FWMLVVQS+A PALYVW WPP WGW+AVI+ CGTF+HYC+A A+ +ADATVV+P Sbjct: 181 VLFWMLVVQSVAGFLPALYVWAWPPTYVWGWVAVISVCGTFAHYCLASAMRYADATVVVP 240 Query: 241 MDFVRVPLTAIAGWLIYAERLDVYTVLGAAMILAGNLMNLKPTARKPARAR 291 MDF+RVPLTA AGWL+Y+ERLD +TVLGAA+IL GNL+NLKP A PARA+ Sbjct: 241 MDFLRVPLTATAGWLLYSERLDGWTVLGAALILFGNLLNLKPAAPIPARAQ 291 >ref|YP_486479.1| hypothetical protein RPB_2866 [Rhodopseudomonas palustris HaA2] gb|ABD07568.1| Protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris HaA2] Length = 293 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/286 (70%), Positives = 238/286 (83%), Gaps = 1/286 (0%) Query: 1 MDRTPSKTRAALWMSGWLALMLIVAVAGREATREVNVFQLMAVRGALGFAMLYPLIHING 60 M R PSK+ AALWMSGWL+LMLI+AVAGRE RE+NVFQ+M +R +GFAMLYPL+H G Sbjct: 1 MTRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAG 60 Query: 61 GFAIVKTARVHVHIARNLIHFCAQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLGE 120 GFA + TAR H+ARNL+H+ AQLGWFFALTLIPIGQVVAIEFTMPIW AILAA+FLGE Sbjct: 61 GFATMATARPLPHLARNLVHYAAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGE 120 Query: 121 RMTAWKIVAIVLGLVGVFVIVRPAAGAINPGQLIALAAAVGFGISVAVVKSLTRTEQTLT 180 R+ W++ A+ LGL+GV VIVRPA G I+PGQLIAL AA GF +++ +VK+LTRTE TLT Sbjct: 121 RLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAFGFAVTITLVKALTRTESTLT 180 Query: 181 IMFWMLVVQSLASIGPALYVWTWPPLSTWGWLAVIAFCGTFSHYCMARALLHADATVVIP 240 I+FWML++QS PALYVW WP W W+ VIAFCGTFSHYCMARAL +ADATVV+P Sbjct: 181 IIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVP 240 Query: 241 MDFVRVPLTAIAGWLIYAERLDVYTVLGAAMILAGNLMNLKPTARK 286 MDF+RVPL+A AGWL+Y ERLD YTVLGA +ILAGNL+NL+ TAR Sbjct: 241 MDFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLR-TARS 285 >ref|YP_004109174.1| hypothetical protein Rpdx1_2858 [Rhodopseudomonas palustris DX-1] gb|ADU44441.1| protein of unknown function DUF6 transmembrane [Rhodopseudomonas palustris DX-1] Length = 296 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/291 (68%), Positives = 236/291 (81%) Query: 1 MDRTPSKTRAALWMSGWLALMLIVAVAGREATREVNVFQLMAVRGALGFAMLYPLIHING 60 M R PS +AALWM+GWLALM+IVAVAGRE RE++VFQ+M +R +GFAMLYP+IH G Sbjct: 1 MTRPPSILKAALWMAGWLALMVIVAVAGRETLRELSVFQVMELRSVIGFAMLYPMIHRTG 60 Query: 61 GFAIVKTARVHVHIARNLIHFCAQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLGE 120 G + TAR H+ RNL+H+ AQLGWF+AL LIPIGQVV+IEFTMPIW AILAA+FLGE Sbjct: 61 GLPAMATARPFSHLTRNLVHYAAQLGWFYALMLIPIGQVVSIEFTMPIWIAILAATFLGE 120 Query: 121 RMTAWKIVAIVLGLVGVFVIVRPAAGAINPGQLIALAAAVGFGISVAVVKSLTRTEQTLT 180 M WKI A+ LGL+GV VIVRPA +I+PGQLIAL AAVGFGISV ++KSLTRTE TLT Sbjct: 121 HMNVWKITAVALGLIGVVVIVRPATSSIDPGQLIALGAAVGFGISVTLMKSLTRTESTLT 180 Query: 181 IMFWMLVVQSLASIGPALYVWTWPPLSTWGWLAVIAFCGTFSHYCMARALLHADATVVIP 240 I+FWML++QS A + PAL+ W WP W W+ ++AFCGTFSHYCMARAL HADAT+V+P Sbjct: 181 IIFWMLIIQSAAGLVPALWTWQWPSAYVWIWIVILAFCGTFSHYCMARALSHADATIVVP 240 Query: 241 MDFVRVPLTAIAGWLIYAERLDVYTVLGAAMILAGNLMNLKPTARKPARAR 291 MDF+RVPL+A AGWLIY ERLD YTV GAA+ILAGNL+NL+ R P AR Sbjct: 241 MDFLRVPLSAAAGWLIYGERLDAYTVAGAALILAGNLLNLRGAPRPPMPAR 291 >ref|YP_569736.1| hypothetical protein RPD_2606 [Rhodopseudomonas palustris BisB5] gb|ABE39835.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisB5] Length = 293 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/292 (69%), Positives = 242/292 (82%), Gaps = 1/292 (0%) Query: 1 MDRTPSKTRAALWMSGWLALMLIVAVAGREATREVNVFQLMAVRGALGFAMLYPLIHING 60 M R PSK+ AALWM+GWL+LM+I+AVAGREA+RE+NVFQ+M +R +GF M+ PLI G Sbjct: 1 MTRQPSKSLAALWMAGWLSLMVIIAVAGREASRELNVFQIMELRSVIGFVMMVPLILGAG 60 Query: 61 GFAIVKTARVHVHIARNLIHFCAQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLGE 120 GFA + T R H+ARNL+H+ AQLGWFFALTLIPIGQVVAIEFTMPIW AILAASFLGE Sbjct: 61 GFAAMATTRPLPHLARNLVHYGAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAASFLGE 120 Query: 121 RMTAWKIVAIVLGLVGVFVIVRPAAGAINPGQLIALAAAVGFGISVAVVKSLTRTEQTLT 180 R+ WKI A+ LGLVGV VIVRPA GA+ PGQLIALAAAVGF +S+ +VKSLTRTE T+T Sbjct: 121 RLNLWKIAAVALGLVGVVVIVRPATGAVEPGQLIALAAAVGFAVSITLVKSLTRTESTMT 180 Query: 181 IMFWMLVVQSLASIGPALYVWTWPPLSTWGWLAVIAFCGTFSHYCMARALLHADATVVIP 240 I+FWMLV+QS+ + P++YVW WP WGW+ VIAFCGTFSHYC+ RAL +ADATVV+P Sbjct: 181 IIFWMLVIQSVLGLLPSVYVWQWPSAYVWGWIVVIAFCGTFSHYCLTRALSYADATVVVP 240 Query: 241 MDFVRVPLTAIAGWLIYAERLDVYTVLGAAMILAGNLMNLKPTARKP-ARAR 291 MDF+RVPL+A AGWLIY ERLD YTVLGAA+IL GNL+NL+ +P AR R Sbjct: 241 MDFLRVPLSATAGWLIYGERLDAYTVLGAALILTGNLLNLRTVRPEPTARDR 292 >ref|YP_001991906.1| hypothetical protein Rpal_2923 [Rhodopseudomonas palustris TIE-1] gb|ACF01431.1| protein of unknown function DUF6 transmembrane [Rhodopseudomonas palustris TIE-1] Length = 296 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/290 (68%), Positives = 238/290 (82%) Query: 1 MDRTPSKTRAALWMSGWLALMLIVAVAGREATREVNVFQLMAVRGALGFAMLYPLIHING 60 M R+PS +AALWM+GWLALM+IVAVAGRE RE++VFQ+M +R +GFAMLYPLIH G Sbjct: 1 MTRSPSMLKAALWMAGWLALMVIVAVAGRETLRELSVFQVMELRSLIGFAMLYPLIHKAG 60 Query: 61 GFAIVKTARVHVHIARNLIHFCAQLGWFFALTLIPIGQVVAIEFTMPIWTAILAASFLGE 120 G + TAR H++RNL+H+ AQLGWF+ALTLI IGQVV+IEFTMPIW AILAA+FLGE Sbjct: 61 GLTAMATARPLAHLSRNLVHYAAQLGWFYALTLISIGQVVSIEFTMPIWIAILAATFLGE 120 Query: 121 RMTAWKIVAIVLGLVGVFVIVRPAAGAINPGQLIALAAAVGFGISVAVVKSLTRTEQTLT 180 M WKI A+VLGL+GV VIVRPA +I PGQLIAL AAVGFGISV ++KSLTRTE TL Sbjct: 121 HMNVWKITAVVLGLIGVVVIVRPATSSIEPGQLIALGAAVGFGISVTLMKSLTRTESTLA 180 Query: 181 IMFWMLVVQSLASIGPALYVWTWPPLSTWGWLAVIAFCGTFSHYCMARALLHADATVVIP 240 I+FWML++QS A + PAL++W WP W W+ +IAFCGTFSHYCMARAL +ADAT+V+P Sbjct: 181 IIFWMLLIQSAAGLVPALWLWQWPSAYVWVWIVIIAFCGTFSHYCMARALTYADATIVVP 240 Query: 241 MDFVRVPLTAIAGWLIYAERLDVYTVLGAAMILAGNLMNLKPTARKPARA 290 MDF+RVPL+A AGWLIY ERLD YTV+GAA+IL GNL+NL+ R PA A Sbjct: 241 MDFLRVPLSATAGWLIYGERLDAYTVIGAALILTGNLLNLRGAPRPPAAA 290