BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0110.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771325.1| transcriptional regulator [Bradyrhizobium japon... 354 8e-96 ref|NP_947639.1| TetR family transcriptional regulator [Rhodopse... 236 2e-60 ref|YP_004109532.1| regulatory protein TetR [Rhodopseudomonas pa... 235 4e-60 ref|YP_001773282.1| TetR family transcriptional regulator [Methy... 184 1e-44 ref|YP_001754287.1| TetR family transcriptional regulator [Methy... 183 2e-44 >ref|NP_771325.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49950.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 354 bits (908), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 177/251 (70%), Positives = 211/251 (84%), Gaps = 5/251 (1%) Query: 1 MGLTATKAK--VAKRGVIKSRGGRPTRDAAIERDQRLIEVATRLFLDRGFDATSIDSVAE 58 MGLTATK + A+R V KSRGGRPT+ AAIERDQRLIEVATRLFLDRGFDATS+D+VAE Sbjct: 59 MGLTATKTRPAAARREVPKSRGGRPTKTAAIERDQRLIEVATRLFLDRGFDATSLDAVAE 118 Query: 59 AARVSKPTVYGQYGDKRGLFAAVLRREIARWLAPLAAAAAEAQTGGNCDGSVEERLTELG 118 AARVSKPTVY +YGDKRGLFAAVLRREIARWLAPL+AAA E Q D VE+RL E+G Sbjct: 119 AARVSKPTVYSRYGDKRGLFAAVLRREIARWLAPLSAAA-ETQLSSASDIPVEQRLVEIG 177 Query: 119 RQLLVLNCSADSIAFSRILTAQAINFPEVAKLAVDEGWSKAVSTTADFFDHLVDKGVLDL 178 R++L C D++AFSR++T+QAINFP+VAKL ++EGW KAV+TTA FFDHLV +G LDL Sbjct: 178 REMLSFTCGPDAVAFSRMMTSQAINFPDVAKLGMEEGWLKAVATTARFFDHLVAQGALDL 237 Query: 179 EDTTIAAETFLNMVVGHTHRMATFGIPIDMKTAETRMEVSIRLFLAGAVGPQDRLRDAAK 238 +DTTIAAE FL++VVGHTHRMATFG +++K+AE RM +I+LFLAGA+GP DR++DA K Sbjct: 238 DDTTIAAEVFLDVVVGHTHRMATFGTALELKSAEKRMRTAIKLFLAGALGPADRVQDATK 297 Query: 239 ETTKARRRPNR 249 T RRRP+R Sbjct: 298 GT--PRRRPSR 306 >ref|NP_947639.1| TetR family transcriptional regulator [Rhodopseudomonas palustris CGA009] ref|YP_001991525.1| TetR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE27735.1| probable transcriptional regulator, TetR family [Rhodopseudomonas palustris CGA009] gb|ACF01050.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris TIE-1] Length = 231 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/222 (53%), Positives = 159/222 (71%), Gaps = 1/222 (0%) Query: 4 TATKAKVAKRGVIKSRGGRPTRDAAIERDQRLIEVATRLFLDRGFDATSIDSVAEAARVS 63 +A + AK KSRGGRPTR AA++RD RL++VATRLF++RGFDAT+ID+VAE ARVS Sbjct: 4 SAAQKTAAKERTTKSRGGRPTRTAALQRDLRLLDVATRLFMERGFDATTIDAVAEEARVS 63 Query: 64 KPTVYGQYGDKRGLFAAVLRREIARWLAPLAAAAAEAQTGGNCDGSVEERLTELGRQLLV 123 K TVY +Y DKRGLF A LRREI RW+APL A E + +GS+E +GR++ Sbjct: 64 KLTVYSRYTDKRGLFEAALRREIERWMAPL-ARGVEERRNNPANGSLESWFVGIGREVQE 122 Query: 124 LNCSADSIAFSRILTAQAINFPEVAKLAVDEGWSKAVSTTADFFDHLVDKGVLDLEDTTI 183 + SA+ A R L+ QA NFPE+A+LA +EGW+ AV+T A FDHL ++G++ + D+ + Sbjct: 123 IGTSAEVTAIMRTLSFQAANFPELARLAHEEGWAHAVATLARLFDHLSEQGLVRVPDSVV 182 Query: 184 AAETFLNMVVGHTHRMATFGIPIDMKTAETRMEVSIRLFLAG 225 AAETFLN+VVG R+ FGIPID K E ++ ++++LFL G Sbjct: 183 AAETFLNIVVGPLTRLTMFGIPIDEKNRERQLRLAVKLFLNG 224 >ref|YP_004109532.1| regulatory protein TetR [Rhodopseudomonas palustris DX-1] gb|ADU44799.1| regulatory protein TetR [Rhodopseudomonas palustris DX-1] Length = 228 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/221 (52%), Positives = 159/221 (71%), Gaps = 1/221 (0%) Query: 5 ATKAKVAKRGVIKSRGGRPTRDAAIERDQRLIEVATRLFLDRGFDATSIDSVAEAARVSK 64 A + AK+ + KSRGGRPTR AA++RD RL++VATRLF++RGFDAT+ID+VAE ARVSK Sbjct: 5 AAQNTAAKQRIAKSRGGRPTRTAALQRDLRLLDVATRLFMERGFDATTIDAVAEEARVSK 64 Query: 65 PTVYGQYGDKRGLFAAVLRREIARWLAPLAAAAAEAQTGGNCDGSVEERLTELGRQLLVL 124 TVY +Y DKRGLF A LRREI RW+APL + E + +GS+E +GRQ+ + Sbjct: 65 LTVYSRYTDKRGLFEAALRREIERWMAPL-SRGVEERRNNPANGSLESWFVGIGRQVQEI 123 Query: 125 NCSADSIAFSRILTAQAINFPEVAKLAVDEGWSKAVSTTADFFDHLVDKGVLDLEDTTIA 184 + + A R L+ QA NFPE+A+LA +EGW +AV+T A FDHL ++G++ + D+ +A Sbjct: 124 GTTPEVTAIMRTLSFQAANFPELARLAHEEGWGRAVATLARLFDHLSEQGLVRVSDSMVA 183 Query: 185 AETFLNMVVGHTHRMATFGIPIDMKTAETRMEVSIRLFLAG 225 AETFLN+VVG R+ FGIPID K E ++ ++++LFL G Sbjct: 184 AETFLNIVVGPLTRLTMFGIPIDEKNRERQLRLAVKLFLTG 224 >ref|YP_001773282.1| TetR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA20848.1| transcriptional regulator, TetR family [Methylobacterium sp. 4-46] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 136/204 (66%), Gaps = 3/204 (1%) Query: 23 PTRDAAIERDQRLIEVATRLFLDRGFDATSIDSVAEAARVSKPTVYGQYGDKRGLFAAVL 82 PTR+ A RD RL+E ATRLF++RGF+ TS+D+VAEAA VSKPT+YG+Y DKR LF AVL Sbjct: 20 PTREEAARRDARLVEAATRLFMERGFEGTSMDAVAEAAGVSKPTLYGRYRDKRALFTAVL 79 Query: 83 RREIARWLAPLA-AAAAEAQTGGNCDGSVEERLTELGRQLLVLNCSADSIAFSRILTAQA 141 R +A WLAPL+ AA A+A+ G D VE L +L R LL + A R + AQA Sbjct: 80 RERVAAWLAPLSAAAEAQARRAGPAD--VEGVLHDLSRALLAEATLPGAEALKRCIVAQA 137 Query: 142 INFPEVAKLAVDEGWSKAVSTTADFFDHLVDKGVLDLEDTTIAAETFLNMVVGHTHRMAT 201 ++FPE+A+LA +EGW + V A D+G + LED IAA+ FLN+V+G R+A Sbjct: 138 MDFPEIARLAHEEGWLRGVRAVAALLAGFADRGQIVLEDPEIAADLFLNLVLGRQSRLAL 197 Query: 202 FGIPIDMKTAETRMEVSIRLFLAG 225 +GI D +T E R + ++RLFL G Sbjct: 198 YGIRTDPETQERRRQAAVRLFLNG 221 >ref|YP_001754287.1| TetR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB23604.1| transcriptional regulator, TetR family [Methylobacterium radiotolerans JCM 2831] Length = 224 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 138/223 (61%), Gaps = 3/223 (1%) Query: 3 LTATKAKVAKRGVIKSRGGRPTRDAAIERDQRLIEVATRLFLDRGFDATSIDSVAEAARV 62 +T T+ + A+ G RGGRPTR A R+ LI VAT LFL+RGFDATSID+VAEAA + Sbjct: 1 MTVTEIERAEAG--PRRGGRPTRAEAARREAHLIAVATTLFLERGFDATSIDAVAEAAGM 58 Query: 63 SKPTVYGQYGDKRGLFAAVLRREIARWLAPLAAAAAEAQTGGNCDGSVEERLTELGRQLL 122 SKPTVY +Y DKR LF AVLR IA WLAPL+AAA G D VE L +L R LL Sbjct: 59 SKPTVYARYRDKRALFEAVLRERIAAWLAPLSAAAEAQAAQGGSD-DVETALEDLSRTLL 117 Query: 123 VLNCSADSIAFSRILTAQAINFPEVAKLAVDEGWSKAVSTTADFFDHLVDKGVLDLEDTT 182 S + R L AQA+ FPE+A+LA +EGW + V A D +G + + D Sbjct: 118 AHGQSPGAAMLKRNLVAQALQFPELARLAHEEGWLRGVRAVARLLDAFARRGRIAVADPE 177 Query: 183 IAAETFLNMVVGHTHRMATFGIPIDMKTAETRMEVSIRLFLAG 225 IAA+ FL++V+G + + +GI D + E R + ++RLFL G Sbjct: 178 IAADLFLSLVLGRSSQATLYGIATDPEAQERRRQAAVRLFLDG 220