BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0105.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771331.1| hypothetical protein bll4691 [Bradyrhizobium ja...   168   3e-40
ref|YP_781685.1| hypothetical protein RPE_2768 [Rhodopseudomonas...   144   4e-33
ref|NP_947945.1| hypothetical protein RPA2603 [Rhodopseudomonas ...   134   6e-30
ref|YP_004109184.1| hypothetical protein Rpdx1_2868 [Rhodopseudo...   131   3e-29
ref|YP_486485.1| hypothetical protein RPB_2872 [Rhodopseudomonas...   128   3e-28

>ref|NP_771331.1| hypothetical protein bll4691 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49956.1| bll4691 [Bradyrhizobium japonicum USDA 110]
          Length = 136

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 96/116 (82%)

Query: 24  SAAAEPEQLNTIKDVVLAIHRCWRPPPADKAGPIDITVIVSFNREGAILGHPRISYESQE 83
            AAAE  Q+NTI+DV   +  CW+PPPA KA P+DITV+VSFNR G ILGHPRI+YES +
Sbjct: 21  GAAAEDAQVNTIQDVFRHLRTCWKPPPAAKARPLDITVVVSFNRSGNILGHPRITYESAD 80

Query: 84  ATDNDRIAYRVAVMEALQRCTPLPFTESLGGAVAGRPFAIPFRNKKYPPRSQEKRA 139
           A+D+DR+ YR+AVMEALQRCTP+PFT+++ GA AGRPFAI FR++K  P +QE+RA
Sbjct: 81  ASDDDRLQYRIAVMEALQRCTPMPFTDAMAGAAAGRPFAIQFRSRKTSPPTQERRA 136


>ref|YP_781685.1| hypothetical protein RPE_2768 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06705.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 146

 Score =  144 bits (363), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 9   AWFAAPLLVWLALTGS-AAAEPEQLNTIKDVVLAIHRCWRPPP-ADKAGPIDITVIVSFN 66
           ++ AA + + L LT + A  +  +++T+K++   + RCWR P  A  +  + ITV+VSF 
Sbjct: 7   SFVAAAIGISLGLTAAPAIGQEARIDTLKELFATLGRCWRAPALAQGSAGMQITVLVSFR 66

Query: 67  REGAILGHPRISYESQEATDNDRIAYRVAVMEALQRCTPLPFTESLGGAVAGRPFAIPFR 126
           R+G+ILG P++++ES +A+D+DR+AYRVAVME LQRCTPLPFTE L GA+AGRP  + F 
Sbjct: 67  RDGSILGKPKVTFESADASDSDRLAYRVAVMETLQRCTPLPFTEGLAGAMAGRPITMRFD 126

Query: 127 NKKYPPRSQEKRAWLLPKI 145
           +++  P+ +EK+AWL PKI
Sbjct: 127 DRRNQPKPKEKQAWLSPKI 145


>ref|NP_947945.1| hypothetical protein RPA2603 [Rhodopseudomonas palustris CGA009]
 ref|YP_001991856.1| hypothetical protein Rpal_2873 [Rhodopseudomonas palustris TIE-1]
 emb|CAE28044.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gb|ACF01381.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 147

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 3/120 (2%)

Query: 25  AAAEPEQLNTIKDVVLAIHRCWRPP--PADKAGPIDITVIVSFNREGAILGHPRISYESQ 82
           A+A+   ++ +  +  A+ +CWR P  PA   G + ITV+VSF R G ILG PRI++ES 
Sbjct: 25  ASAQNAPIDNLNALFSAMKQCWRSPRLPAGNPG-MQITVLVSFTRSGEILGKPRITFESP 83

Query: 83  EATDNDRIAYRVAVMEALQRCTPLPFTESLGGAVAGRPFAIPFRNKKYPPRSQEKRAWLL 142
           EA  +D +AYRVAVMEALQRCTPLPFT S+GGAVAGRPF + F +++  P+  EKRAWL+
Sbjct: 84  EAGRDDSLAYRVAVMEALQRCTPLPFTPSMGGAVAGRPFTLRFDDRRQSPKPTEKRAWLI 143


>ref|YP_004109184.1| hypothetical protein Rpdx1_2868 [Rhodopseudomonas palustris DX-1]
 gb|ADU44451.1| hypothetical protein Rpdx1_2868 [Rhodopseudomonas palustris DX-1]
          Length = 147

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 25  AAAEPEQLNTIKDVVLAIHRCWRPPPADKAGP-IDITVIVSFNREGAILGHPRISYESQE 83
           A A+   ++ +  +  A+ +CW PP      P + ITV+VSF R G ILG PRI++ES E
Sbjct: 25  ALAQDAPIDNLDALFFAMKQCWHPPRLPPGHPGMQITVLVSFKRNGEILGKPRITFESPE 84

Query: 84  ATDNDRIAYRVAVMEALQRCTPLPFTESLGGAVAGRPFAIPFRNKKYPPRSQEKRAWL 141
           A  +D +AYRVAVMEALQRCTPLPFT S+GGAVAGRPF + F +++  P+  EKRAWL
Sbjct: 85  AGRDDSLAYRVAVMEALQRCTPLPFTPSMGGAVAGRPFTLRFDDRRQSPKPTEKRAWL 142


>ref|YP_486485.1| hypothetical protein RPB_2872 [Rhodopseudomonas palustris HaA2]
 gb|ABD07574.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 147

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 20  ALTGSAAAEPEQLNTIKDVVLAIHRCWRPPPADKAGP-IDITVIVSFNREGAILGHPRIS 78
           AL  +A A+  +++ +  +  A+ +CWRPP      P   ITV+VSF R+G ILG PRI+
Sbjct: 20  ALGRAAVAQEARIDNLDGLFAALKQCWRPPQLAPGDPGKQITVLVSFKRDGQILGKPRIT 79

Query: 79  YESQEATDNDRIAYRVAVMEALQRCTPLPFTESLGGAVAGRPFAIPFRNKKYPPRSQEKR 138
           +ES      D +AYR+AVME LQRCTPLPFT+S+G AVAGRPF + F +++  P+  EKR
Sbjct: 80  FESATTPGFDSLAYRIAVMETLQRCTPLPFTQSMGNAVAGRPFTLRFDDRRTFPQPNEKR 139

Query: 139 AWL 141
           AWL
Sbjct: 140 AWL 142