BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0099.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum ... 684 0.0 dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum U... 683 0.0 ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTA... 680 0.0 ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS... 677 0.0 ref|ZP_08629773.1| DNA gyrase subunit A [Bradyrhizobiaceae bacte... 675 0.0 >ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 909 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/379 (90%), Positives = 354/379 (93%), Gaps = 1/379 (0%) Query: 1 VKQQFATPRKTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRA 60 VK +FATPR+T I+EQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS YRAQRRGGKGRA Sbjct: 509 VKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRA 568 Query: 61 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 120 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG Sbjct: 569 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 628 Query: 121 ERITTIMPLPEDESSWANLDVMFATTGGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDV 180 ERITTIMPLPEDES+W NLDVMFATTGG VRRNKLSDFVDVRRSGIIAMKL E EAIVDV Sbjct: 629 ERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDV 688 Query: 181 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEADKLISLAILRHVETT 240 QICTERDDVLLT AGGQCIRFPVTDVRVFTGRTSMGVRGIAL E DK+ISLAILRHVETT Sbjct: 689 QICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHVETT 748 Query: 241 SDERSAYLKMRRAV-AGEAAAEEPVEAEGEETANAIQLSQERYAELSAAEQVVLTVSVNG 299 SDERSAYLKMRRAV A E +AE EET+ + QL+QERY E+SAAEQVVLTVSVNG Sbjct: 749 SDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVSVNG 808 Query: 300 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVAD 359 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPV Sbjct: 809 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVEG 868 Query: 360 IRVAGRSTQGVIVFDTAED 378 IR+AGRSTQGVIVFDTAED Sbjct: 869 IRIAGRSTQGVIVFDTAED 887 >dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 884 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/379 (90%), Positives = 354/379 (93%), Gaps = 1/379 (0%) Query: 1 VKQQFATPRKTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRA 60 VK +FATPR+T I+EQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS YRAQRRGGKGRA Sbjct: 484 VKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRA 543 Query: 61 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 120 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG Sbjct: 544 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 603 Query: 121 ERITTIMPLPEDESSWANLDVMFATTGGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDV 180 ERITTIMPLPEDES+W NLDVMFATTGG VRRNKLSDFVDVRRSGIIAMKL E EAIVDV Sbjct: 604 ERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDV 663 Query: 181 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEADKLISLAILRHVETT 240 QICTERDDVLLT AGGQCIRFPVTDVRVFTGRTSMGVRGIAL E DK+ISLAILRHVETT Sbjct: 664 QICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHVETT 723 Query: 241 SDERSAYLKMRRAV-AGEAAAEEPVEAEGEETANAIQLSQERYAELSAAEQVVLTVSVNG 299 SDERSAYLKMRRAV A E +AE EET+ + QL+QERY E+SAAEQVVLTVSVNG Sbjct: 724 SDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVSVNG 783 Query: 300 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVAD 359 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPV Sbjct: 784 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVEG 843 Query: 360 IRVAGRSTQGVIVFDTAED 378 IR+AGRSTQGVIVFDTAED Sbjct: 844 IRIAGRSTQGVIVFDTAED 862 >ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] Length = 915 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/378 (89%), Positives = 358/378 (94%) Query: 1 VKQQFATPRKTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRA 60 VK +F TPR+T IIEQEGEVEDEDLIQREDMVVTVSHAGY KRVPLS YRAQRRGGKGR+ Sbjct: 510 VKAEFGTPRRTAIIEQEGEVEDEDLIQREDMVVTVSHAGYTKRVPLSAYRAQRRGGKGRS 569 Query: 61 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 120 GMQTR+EDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP+AAPN+RGKALINILPLEQG Sbjct: 570 GMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAAPNSRGKALINILPLEQG 629 Query: 121 ERITTIMPLPEDESSWANLDVMFATTGGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDV 180 ERITTIMPLPEDESSWANLDVMFATTGG VRRNKLSDFVDVRRSGIIAMKL +GE IV+V Sbjct: 630 ERITTIMPLPEDESSWANLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEEIVNV 689 Query: 181 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEADKLISLAILRHVETT 240 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAE DK+ISL+ILRHVETT Sbjct: 690 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEGDKVISLSILRHVETT 749 Query: 241 SDERSAYLKMRRAVAGEAAAEEPVEAEGEETANAIQLSQERYAELSAAEQVVLTVSVNGY 300 SDER+AYLKMRRA++GE EEPVE EGEE A AIQLSQERY E+SA EQVVLTVSVNGY Sbjct: 750 SDERTAYLKMRRAMSGETTTEEPVETEGEEAAGAIQLSQERYVEMSAQEQVVLTVSVNGY 809 Query: 301 GKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVADI 360 GKRTSSYEYRTTGRGGKGIVAMSVNNRNG LVASFPVED+DQIMLVTDKGQLIRCPV I Sbjct: 810 GKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDKGQLIRCPVDGI 869 Query: 361 RVAGRSTQGVIVFDTAED 378 R+AGRSTQGVIVF+TA+D Sbjct: 870 RIAGRSTQGVIVFNTADD 887 >ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS 278] emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp. ORS 278] Length = 916 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/379 (90%), Positives = 357/379 (94%), Gaps = 1/379 (0%) Query: 1 VKQQFATPRKTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRA 60 +K +FATPR+T I EQEGE+EDEDLIQREDMVVTVSHAGY KRVPLS YRAQRRGGKGR Sbjct: 510 IKAEFATPRRTVIAEQEGEMEDEDLIQREDMVVTVSHAGYTKRVPLSAYRAQRRGGKGRT 569 Query: 61 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 120 GMQTR+EDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP+AAPN RGKALINILPLEQG Sbjct: 570 GMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAAPNGRGKALINILPLEQG 629 Query: 121 ERITTIMPLPEDESSWANLDVMFATTGGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDV 180 ERITTIMPLPEDESSWANLDVMFATTGG VRRNKLSDFVDVRRSGIIAMKL EGE IV+V Sbjct: 630 ERITTIMPLPEDESSWANLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEEIVNV 689 Query: 181 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEADKLISLAILRHVETT 240 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAE DKLISL ILRHVETT Sbjct: 690 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEGDKLISLTILRHVETT 749 Query: 241 SDERSAYLKMRRAVAGEAAAEEPVEAEGEE-TANAIQLSQERYAELSAAEQVVLTVSVNG 299 SDER+AYLKMRRA++GE AAEEPVE EGEE A AIQLSQERY E+SA EQVVLTVSVNG Sbjct: 750 SDERTAYLKMRRAMSGETAAEEPVETEGEEAAAGAIQLSQERYVEMSAQEQVVLTVSVNG 809 Query: 300 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVAD 359 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNG LVASFPVED+DQIMLVTDKGQLIRCPV Sbjct: 810 YGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDKGQLIRCPVDG 869 Query: 360 IRVAGRSTQGVIVFDTAED 378 IR+AGRSTQGVIVF+TA+D Sbjct: 870 IRIAGRSTQGVIVFNTADD 888 >ref|ZP_08629773.1| DNA gyrase subunit A [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07628.1| DNA gyrase subunit A [Bradyrhizobiaceae bacterium SG-6C] Length = 906 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/378 (88%), Positives = 358/378 (94%) Query: 1 VKQQFATPRKTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRA 60 VK +FATPR+T II+QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQ+RGGKGR+ Sbjct: 509 VKDEFATPRRTVIIDQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRS 568 Query: 61 GMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQG 120 GMQTRDEDFVSRLF+ASTHTPVLFFSSRGQVYKEKVWRLPMAAPN+RGKALINILPLEQG Sbjct: 569 GMQTRDEDFVSRLFIASTHTPVLFFSSRGQVYKEKVWRLPMAAPNSRGKALINILPLEQG 628 Query: 121 ERITTIMPLPEDESSWANLDVMFATTGGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDV 180 ERITTIMPLPEDESSW NLDVMFATTGG VRRNKLSDFVDVRRSGIIAMKL EGEAIVDV Sbjct: 629 ERITTIMPLPEDESSWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDV 688 Query: 181 QICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEADKLISLAILRHVETT 240 QI TE DDVLLTAAGGQCIRFPVTDVRVF+GRTSMGVRGIALAE DKLISL ILRH+E + Sbjct: 689 QIATENDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAEGDKLISLTILRHLEAS 748 Query: 241 SDERSAYLKMRRAVAGEAAAEEPVEAEGEETANAIQLSQERYAELSAAEQVVLTVSVNGY 300 SDER+AYLKMRRAVAGEAAAEE E + EE++ A+QLSQ+RYA++SAAEQ VLT+S NGY Sbjct: 749 SDERAAYLKMRRAVAGEAAAEENSETDAEESSAAVQLSQDRYAQMSAAEQFVLTISENGY 808 Query: 301 GKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTDKGQLIRCPVADI 360 GKR+SS+EYRTTGRGGKGIVAMSVNNRNG LVASFPVED+DQIMLVTDKGQLIRCPV I Sbjct: 809 GKRSSSFEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDKGQLIRCPVEGI 868 Query: 361 RVAGRSTQGVIVFDTAED 378 RVAGRSTQGVIVFDTAED Sbjct: 869 RVAGRSTQGVIVFDTAED 886