BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0098.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTA... 886 0.0 ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum ... 867 0.0 ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A... 862 0.0 ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS... 862 0.0 ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palus... 847 0.0 >ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] Length = 915 Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/487 (87%), Positives = 463/487 (95%) Query: 1 LSDNDDHKPGEPPGPSDIRPVSILDEMKKSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 +SD +D KPGEP GPSDIRPVSILDEMK+SYLDYAMSVIVSRALPDARDGLKPVHRRILY Sbjct: 1 MSDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 Query: 61 SMHEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSLRVPLIDGQGNFG 120 SM+EQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFS+RVPLIDGQGNFG Sbjct: 61 SMYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFG 120 Query: 121 SVDGDPPAAYRYTEARLTRAALAVLADIDMETVDFQPNYDNSEKEPSVLPARFPNLLVNG 180 SVDGDPPAAYRYTEA+L ++A+ +L DID +TVDFQ NYDNS+KEPSVLPA+FPNLLVNG Sbjct: 121 SVDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNG 180 Query: 181 AGGIAVGMATNIPPHNLGEVVDACVALIDNPALTIDELIDIIPGPDFPTGGVILGRQGIR 240 AGGIAVGMATNIPPHNL EV+DACVALIDNPA++IDEL IIPGPDFPTGG+ILGR GIR Sbjct: 181 AGGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIR 240 Query: 241 SAYHLGRGSIVMRGKVTIDTIRKDREAIVITEIPYQVNKATMVERIADLVKEKKIEGIGD 300 SAYHLGRGSI+MRGKVTIDTIRKDREAI+++EIPYQVNKATMVERIA+LV+EKKIEGI D Sbjct: 241 SAYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300 Query: 301 LRDESDRDGYRVVIELKREAVPDVVLNQLYRFTPLQTNFPANMLALDSGRPQTMNLKDLL 360 LRDESDRDGYRVVIELKR+AV DVVLNQLY+FTPLQT+F ANMLALD GRPQTM LKDLL Sbjct: 301 LRDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLL 360 Query: 361 TIFVAFREQVVTRRTKFLLGKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTAREALM 420 TIFVAFRE+VVTRRTKFLL KARDRAHILVGLA+AVANIDEIIRVIRTSP+P +AR+ALM Sbjct: 361 TIFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALM 420 Query: 421 SRDWPARDVEAMITLIDDPRHRINEDGTLRLSMEQARAILDLRLQRLTALGRDEISEELD 480 SRDWPARDVEA+ITLIDDPRHR+ EDGT+RLS EQA+AILDLRLQRLTALGR+EIS+ELD Sbjct: 421 SRDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELD 480 Query: 481 KLAAXIS 487 KL I+ Sbjct: 481 KLKIEIA 487 >ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 909 Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/484 (88%), Positives = 461/484 (95%), Gaps = 1/484 (0%) Query: 5 DDHKPGEPPG-PSDIRPVSILDEMKKSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMH 63 DD KPG+ P PSDIRPVSI +EMKKSYLDYAMSVIV+RALPDARDGLKPVHRRILYSM+ Sbjct: 3 DDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMN 62 Query: 64 EQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSLRVPLIDGQGNFGSVD 123 EQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFS+RVPLIDGQGNFGSVD Sbjct: 63 EQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVD 122 Query: 124 GDPPAAYRYTEARLTRAALAVLADIDMETVDFQPNYDNSEKEPSVLPARFPNLLVNGAGG 183 GDPPAAYRYTEARLT+AALA+LADID +TVDFQPNYDN+E EPSVLPA+FPNLLVNGAGG Sbjct: 123 GDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGG 182 Query: 184 IAVGMATNIPPHNLGEVVDACVALIDNPALTIDELIDIIPGPDFPTGGVILGRQGIRSAY 243 IAVGMATNIPPHNLGEV+DACVALIDNPALTIDELI+I+PGPDFPTGGVILGR GIR+AY Sbjct: 183 IAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAY 242 Query: 244 HLGRGSIVMRGKVTIDTIRKDREAIVITEIPYQVNKATMVERIADLVKEKKIEGIGDLRD 303 HLGRGSIVMRGKV I+TIRK+REA++ITEIPYQVNKATMVERIA+LVKEKKIEGIGDLRD Sbjct: 243 HLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRD 302 Query: 304 ESDRDGYRVVIELKREAVPDVVLNQLYRFTPLQTNFPANMLALDSGRPQTMNLKDLLTIF 363 ESDRDGYRVVIELKR+AV DVVLNQLYRFTPLQT+F NM+ALDSGRP+ M+LKDLL IF Sbjct: 303 ESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIF 362 Query: 364 VAFREQVVTRRTKFLLGKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTAREALMSRD 423 V FRE+VVTRRTKFLL KARDRAHILVGLAIAVANIDE+IRVIRTSPDP TAR+ LMSRD Sbjct: 363 VDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRD 422 Query: 424 WPARDVEAMITLIDDPRHRINEDGTLRLSMEQARAILDLRLQRLTALGRDEISEELDKLA 483 WPARDVE M+TLIDDPRHRI+ DGT+RLSMEQARAILDLRLQRLTALGRDEI +ELDKLA Sbjct: 423 WPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLA 482 Query: 484 AXIS 487 I+ Sbjct: 483 GEIA 486 >ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] Length = 913 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/502 (83%), Positives = 464/502 (92%), Gaps = 6/502 (1%) Query: 1 LSDNDDHKPGEPPGPSDIRPVSILDEMKKSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 +SD++D KPGEPP PS IRPVSILDEMK+SYLDYAMSVIV+RALPDARDGLKPVHRRILY Sbjct: 1 MSDSEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 61 SMHEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSLRVPLIDGQGNFG 120 +MHE G +K Y KSAR VGDVIGKYHPHGDQS+YDA+VRMAQDFS+RVPLIDGQGNFG Sbjct: 61 AMHENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 121 SVDGDPPAAYRYTEARLTRAALAVLADIDMETVDFQPNYDNSEKEPSVLPARFPNLLVNG 180 SVDGD AA RYTE+RLT+ A ++L DID +TVDFQPNYDNSEKEPSVLPA+FPNLLVNG Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNG 180 Query: 181 AGGIAVGMATNIPPHNLGEVVDACVALIDNPALTIDELIDIIPGPDFPTGGVILGRQGIR 240 AGGIAVGMATNIPPHNLGEV+DACVALID+PAL+ID+LI+IIPGPDFPTGG+ILGRQGIR Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIR 240 Query: 241 SAYHLGRGSIVMRGKVTIDTIRKDREAIVITEIPYQVNKATMVERIADLVKEKKIEGIGD 300 SAYHLGRGSIVMRGKV+IDTIRKDREAIVI+EIPYQVNKA+MVERIA+LV+EKKIEGI D Sbjct: 241 SAYHLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISD 300 Query: 301 LRDESDRDGYRVVIELKREAVPDVVLNQLYRFTPLQTNFPANMLALDSGRPQTMNLKDLL 360 LRDESDR+G+RVV+ELKR+AVP+VVLNQLYRFTPLQTNF ANM+ALD+GRPQ MNLKDLL Sbjct: 301 LRDESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLL 360 Query: 361 TIFVAFREQVVTRRTKFLLGKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTAREALM 420 T+F+AFREQVVTRRTKFLL KARDRAHILVGLAIAVANIDEIIRVIR SPDPN ARE LM Sbjct: 361 TLFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLM 420 Query: 421 SRDWPARDVEAMITLIDDPRHRINEDGTLRLSMEQARAILDLRLQRLTALGRDEISEELD 480 SRDWPA+DV AMITLIDDPRHR++ DGT RLSMEQA+AILDLRLQRLTALGR+EISEELD Sbjct: 421 SRDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELD 480 Query: 481 KLAAXIS------TSCARVRAC 496 KLA I+ S ARV+A Sbjct: 481 KLAIEIADYLDILRSRARVQAI 502 >ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS 278] emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp. ORS 278] Length = 916 Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/487 (85%), Positives = 453/487 (93%) Query: 1 LSDNDDHKPGEPPGPSDIRPVSILDEMKKSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 +SD +D KPGEP GPSDIRPVSILDEMK+SYLDYAMSVIV+RALPDARDGLKPVHRRILY Sbjct: 1 MSDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 61 SMHEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSLRVPLIDGQGNFG 120 M+E G +K Y KSAR VGDVIGKYHPHGDQS+Y A+VRMAQDFS+RVPLIDGQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFG 120 Query: 121 SVDGDPPAAYRYTEARLTRAALAVLADIDMETVDFQPNYDNSEKEPSVLPARFPNLLVNG 180 SVDGD PAA RYTE+RLT+ A ++L D+D +TVDFQPNYD+SEKEPSVLPA+FPNLLVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNG 180 Query: 181 AGGIAVGMATNIPPHNLGEVVDACVALIDNPALTIDELIDIIPGPDFPTGGVILGRQGIR 240 AGGIAVGMATNIPPHNLGEV+DAC+AL DNPAL+IDEL IIPGPDFPTGG+ILGR GIR Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIR 240 Query: 241 SAYHLGRGSIVMRGKVTIDTIRKDREAIVITEIPYQVNKATMVERIADLVKEKKIEGIGD 300 SAYH GRGSIVMRGKVTIDTIRKDREAI+ITEIPYQVNKA+MVERIA+LV+EKKIEGI D Sbjct: 241 SAYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISD 300 Query: 301 LRDESDRDGYRVVIELKREAVPDVVLNQLYRFTPLQTNFPANMLALDSGRPQTMNLKDLL 360 LRDESDRDG+RVV+ELKR+AVPDVVLNQLY+FTPLQTNF ANM+ALD GRPQTMNLKDLL Sbjct: 301 LRDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLL 360 Query: 361 TIFVAFREQVVTRRTKFLLGKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTAREALM 420 +FVAFREQVVTRRTKFLL KARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARE LM Sbjct: 361 QVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLM 420 Query: 421 SRDWPARDVEAMITLIDDPRHRINEDGTLRLSMEQARAILDLRLQRLTALGRDEISEELD 480 SRDWPA+DV AMITLIDDPRHRIN DGT RLS+EQA+AILDLRLQRLTALGR+EIS+ELD Sbjct: 421 SRDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELD 480 Query: 481 KLAAXIS 487 KLA I+ Sbjct: 481 KLAVEIA 487 >ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1] gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1] Length = 913 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/487 (83%), Positives = 448/487 (91%) Query: 1 LSDNDDHKPGEPPGPSDIRPVSILDEMKKSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60 +SD DD KPGEP PSDIRPVSILDEMK+SYLDYAMSVIV+RALPDARDGLKPVHRRILY Sbjct: 1 MSDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60 Query: 61 SMHEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSLRVPLIDGQGNFG 120 M+E G +K Y KSAR VGDVIGKYHPHGDQS+YDA+VRMAQDFS+RVPLIDGQGNFG Sbjct: 61 GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120 Query: 121 SVDGDPPAAYRYTEARLTRAALAVLADIDMETVDFQPNYDNSEKEPSVLPARFPNLLVNG 180 SVDGD PAA RYTE+RLT+ A +L DID +TVDFQPNYDNSE+EP VLPA+FPNLLVNG Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180 Query: 181 AGGIAVGMATNIPPHNLGEVVDACVALIDNPALTIDELIDIIPGPDFPTGGVILGRQGIR 240 AGGIAVGMATNIPPHNLGEV+DACVALID+PALTID+L I+PGPDFPTGG+ILGR GIR Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIR 240 Query: 241 SAYHLGRGSIVMRGKVTIDTIRKDREAIVITEIPYQVNKATMVERIADLVKEKKIEGIGD 300 SAY GRGSIVMRGKV I+T+RKDREAI+++EIPYQVNKATMVERIA+LV+EKKIEGI D Sbjct: 241 SAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300 Query: 301 LRDESDRDGYRVVIELKREAVPDVVLNQLYRFTPLQTNFPANMLALDSGRPQTMNLKDLL 360 LRDESDRDG+RVVIEL+R+AVP+VVLNQLY+FTPLQTNF ANM+AL+ GRPQ MNLKDLL Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360 Query: 361 TIFVAFREQVVTRRTKFLLGKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTAREALM 420 T+FVAFREQVVTRRTKFLL KARDRAHILVGLAIAVANIDEIIRVIR SPDPNTARE LM Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420 Query: 421 SRDWPARDVEAMITLIDDPRHRINEDGTLRLSMEQARAILDLRLQRLTALGRDEISEELD 480 SRDWPA DV AMITLIDDPRH++NEDGT RLS EQA+AILDLRLQRLTALGR+EIS+ELD Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELD 480 Query: 481 KLAAXIS 487 KLA I+ Sbjct: 481 KLAVEIA 487