BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0091.p (948 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771342.1| excinuclease ABC subunit A [Bradyrhizobium japo... 1722 0.0 ref|YP_001240326.1| excinuclease ABC subunit A [Bradyrhizobium s... 1699 0.0 ref|YP_577338.1| excinuclease ABC subunit A [Nitrobacter hamburg... 1698 0.0 ref|YP_004109007.1| excinuclease ABC subunit A [Rhodopseudomonas... 1693 0.0 ref|YP_001992135.1| excinuclease ABC subunit A [Rhodopseudomonas... 1689 0.0 >ref|NP_771342.1| excinuclease ABC subunit A [Bradyrhizobium japonicum USDA 110] sp|Q89L46.1|UVRA_BRAJA RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A dbj|BAC49967.1| ABC excinuclease subunit A [Bradyrhizobium japonicum USDA 110] Length = 991 Score = 1722 bits (4459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 887/996 (89%), Positives = 912/996 (91%), Gaps = 53/996 (5%) Query: 1 MDEVLKAKRQQ-NAGSSSRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD 59 MDEV+KAKRQQ NAGSS RAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD Sbjct: 1 MDEVIKAKRQQQNAGSSLRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD 60 Query: 60 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE 119 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE Sbjct: 61 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE 120 Query: 120 IYDYMRLLWARVGVPYSPATGLPIESQIVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYK 179 IYDYMRLLWARVGVPYSPATGLPIESQ VSQMVDRVLALPEGTRLYLLAPVVRGRKGEY+ Sbjct: 121 IYDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYR 180 Query: 180 KELAEYLKKGFQRVKIDGTFYELSEAPALDKKFPHDIDVVVDRIVVRPDLAQRLAESFET 239 KELAE+LKKGFQRVKIDGTF+EL+EAP LDKKFPHDIDVVVDRIVVR D+ QRLAESFET Sbjct: 181 KELAEWLKKGFQRVKIDGTFHELAEAPTLDKKFPHDIDVVVDRIVVRADIGQRLAESFET 240 Query: 240 ALKLAEGLAVIEYADAPAAAAQDEKKEDKKKTAKIHDKSGPERILFSEKFACPVSGFTIP 299 ALKLAEGLAV+E+ADAPAAA +EKK KTAKIHDKSGPERILFSEKFACPVSGFTIP Sbjct: 241 ALKLAEGLAVVEFADAPAAAPAEEKK----KTAKIHDKSGPERILFSEKFACPVSGFTIP 296 Query: 300 EIEPRLFSFNNPYGACPACGGLGVEQHIDEDLVIPDKDLTLRKGAIAPWAKSSSPYYIQT 359 EIEPRLFSFNNPYGACPACGGLGVEQH+DEDLVIPDK+L + KGAIAPWAKSSSPYY+QT Sbjct: 297 EIEPRLFSFNNPYGACPACGGLGVEQHVDEDLVIPDKELAIGKGAIAPWAKSSSPYYVQT 356 Query: 360 LTALGKHYKFTLDTKWKDLTKKVQNALLHGSGDDEIKFSYEDGVRSYDTKKPFEGVITNI 419 LTALGKHYKFTL TKWKDL KK ++A+LHGSG+DEIKFSYEDGVRSYDTKKPFEGVITNI Sbjct: 357 LTALGKHYKFTLTTKWKDLPKKTRDAILHGSGEDEIKFSYEDGVRSYDTKKPFEGVITNI 416 Query: 420 NRRYRETESEWAREELGKYFSDVPCAGCNGHRLKPEALCVKIGGKHIGEISELSVKRAGE 479 NRRYRETESEWAREEL KYF DVPC CNG RLKPEALCVK+G KHIGEISELSVK+AGE Sbjct: 417 NRRYRETESEWAREELAKYFHDVPCGACNGFRLKPEALCVKVGTKHIGEISELSVKKAGE 476 Query: 480 WFETVPEALNAQQNEIATRILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGESQRIRLAS 539 WFETVPEALN QQNEIA RILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGESQRIRLAS Sbjct: 477 WFETVPEALNKQQNEIAGRILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGESQRIRLAS 536 Query: 540 QIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVVVVEHDEDAIRLADYVLD 599 QIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVVVVEHDEDAIRLADYVLD Sbjct: 537 QIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVVVVEHDEDAIRLADYVLD 596 Query: 600 IGPGAGMHGGHIVAEGTPDQIMRNPKSLTGKYLTGELSVPVPDRRPPNHRRTIKVVNARG 659 IGPGAGMHGGHIVAEGTP +IMRNPKSLTGKYLTGEL V VP+RRPPNHRRTIKVVNARG Sbjct: 597 IGPGAGMHGGHIVAEGTPAEIMRNPKSLTGKYLTGELEVEVPERRPPNHRRTIKVVNARG 656 Query: 660 NNLKNVSAEIPLGLFTCVTGVSGX------------------------------------ 683 NNLKNV+AEIPLGLFTCVTGVSG Sbjct: 657 NNLKNVTAEIPLGLFTCVTGVSGGGKSTLLIDTLYRAIARKLNNASEGAAPHDRIEGLEH 716 Query: 684 -----------IGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCE 732 IGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCE Sbjct: 717 IDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCE 776 Query: 733 ACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLFKGKSIADVLDMTVEEAAEFFK 792 ACQGDGVIKIEMHFLPDVYVTCD CKGKRYNRETLEVLFKGKSIADVLDMTVEEAA+FFK Sbjct: 777 ACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVLFKGKSIADVLDMTVEEAADFFK 836 Query: 793 AVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTT 852 AVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTT Sbjct: 837 AVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTT 896 Query: 853 GLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPP 912 GLHFHDV KLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPP Sbjct: 897 GLHFHDVKKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPP 956 Query: 913 EDIVKAPRSYTGKFLAPVLKKANSKPRKSSASEAAE 948 EDI KAPRSYTGKFL PVLKKA KP++ S SEAAE Sbjct: 957 EDIAKAPRSYTGKFLEPVLKKAR-KPKRRSTSEAAE 991 >ref|YP_001240326.1| excinuclease ABC subunit A [Bradyrhizobium sp. BTAi1] gb|ABQ36420.1| UvrABC system protein A [Bradyrhizobium sp. BTAi1] Length = 1019 Score = 1699 bits (4399), Expect = 0.0, Method: Compositional matrix adjust. Identities = 872/1020 (85%), Positives = 909/1020 (89%), Gaps = 73/1020 (7%) Query: 1 MDEVLKAKRQQNAGSSS-RAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD 59 MDEVLKAK++ A SSS RAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD Sbjct: 1 MDEVLKAKQRAQANSSSLRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFD 60 Query: 60 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE 119 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE Sbjct: 61 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE 120 Query: 120 IYDYMRLLWARVGVPYSPATGLPIESQIVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYK 179 IYDYMRLLWARVGVPYSPATGLPIESQ VSQMVDRVLALPEGTRLYLLAPVVRGRKGEYK Sbjct: 121 IYDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYK 180 Query: 180 KELAEYLKKGFQRVKIDGTFYELSEAPALDKKFPHDIDVVVDRIVVRPDLAQRLAESFET 239 KELAEYLKKGFQRVKIDGTF+EL+EAP LDKKFPHDIDVVVDRIVVRPD+ QRLAESFET Sbjct: 181 KELAEYLKKGFQRVKIDGTFHELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFET 240 Query: 240 ALKLAEGLAVIEYADAPAAAAQDEKK---------------------EDKKKTAKIHDKS 278 ALKLAEGLAVIE+ADAP +++ + ++KKK AKIHDKS Sbjct: 241 ALKLAEGLAVIEFADAPPSSSPGRAEGARPGDPSSAKEMDGRVKPGHDEKKKVAKIHDKS 300 Query: 279 GPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPACGGLGVEQHIDEDLVIPDKDL 338 GPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACP CGGLGVEQH+D DLVIPDKDL Sbjct: 301 GPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPECGGLGVEQHVDADLVIPDKDL 360 Query: 339 TLRKGAIAPWAKSSSPYYIQTLTALGKHYKFTLDTKWKDLTKKVQNALLHGSGDDEIKFS 398 TLRKGAIAPWAKSSSPYY+QTLTALGK YKFTLDTKWKDL KK QNALLHGSGDDEIKF+ Sbjct: 361 TLRKGAIAPWAKSSSPYYLQTLTALGKFYKFTLDTKWKDLPKKTQNALLHGSGDDEIKFT 420 Query: 399 YEDGVRSYDTKKPFEGVITNINRRYRETESEWAREELGKYFSDVPCAGCNGHRLKPEALC 458 YEDGVR+YDTKKPFEGVITNI RR+RETESEWAREELGKYF+DVPCA C G RLKPEALC Sbjct: 421 YEDGVRAYDTKKPFEGVITNIERRFRETESEWAREELGKYFNDVPCAACRGFRLKPEALC 480 Query: 459 VKIGGKHIGEISELSVKRAGEWFETVPEALNAQQNEIATRILKEIRERLTFLLDVGLNYL 518 VK+GGKHIGEISELSVK AGEWF VP+ LN QQ EIATRILKEIR+RLTFLLDVGLNYL Sbjct: 481 VKVGGKHIGEISELSVKAAGEWFAEVPKQLNPQQTEIATRILKEIRDRLTFLLDVGLNYL 540 Query: 519 TLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLG 578 TL+RSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLG Sbjct: 541 TLARSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLG 600 Query: 579 NTVVVVEHDEDAIRLADYVLDIGPGAGMHGGHIVAEGTPDQIMRNPKSLTGKYLTGELSV 638 NTV+VVEHDEDAIRLADYVLDIGPGAG HGG+IVAEGTP +IMRNPKSLTGKYLTGEL V Sbjct: 601 NTVIVVEHDEDAIRLADYVLDIGPGAGTHGGNIVAEGTPAEIMRNPKSLTGKYLTGELEV 660 Query: 639 PVPDRRPPNHRRTIKVVNARGNNLKNVSAEIPLGLFTCVTGVSGX--------------- 683 VP+RRPPNHRRTIKVVNARGNNLKNVSAEIPLGLFT +TGVSG Sbjct: 661 EVPERRPPNHRRTIKVVNARGNNLKNVSAEIPLGLFTAITGVSGGGKSTLLIDTLYKAIA 720 Query: 684 --------------------------------IGRTPRSNPATYTGAFTPIREWFAGLPE 711 IGRTPRSNPATYTGAFTPIREWFAGLPE Sbjct: 721 RKLNGANEAAAPHDRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPE 780 Query: 712 AKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLF 771 +KARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCD CKGKRYNRETL+VLF Sbjct: 781 SKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLDVLF 840 Query: 772 KGKSIADVLDMTVEEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKL 831 KGKSIADVLDMTVEEAA+FFKAVPRVR+TF+TL RVGLDYIHVGQQATTLSGGEAQRVKL Sbjct: 841 KGKSIADVLDMTVEEAADFFKAVPRVRDTFETLRRVGLDYIHVGQQATTLSGGEAQRVKL 900 Query: 832 AKELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADW 891 AKELSKRATGRTLYILDEPTTGLHFHDV KLLEVLHELVAQGNTVVVIEHNLEVIKTADW Sbjct: 901 AKELSKRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVAQGNTVVVIEHNLEVIKTADW 960 Query: 892 VIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLAPVLKKANSKPRKSS---ASEAAE 948 VIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTG+FL PVL+K+ +KP+K S ASEAAE Sbjct: 961 VIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGQFLKPVLEKS-AKPKKRSRGAASEAAE 1019 >ref|YP_577338.1| excinuclease ABC subunit A [Nitrobacter hamburgensis X14] gb|ABE62878.1| UvrA family protein [Nitrobacter hamburgensis X14] Length = 1013 Score = 1698 bits (4397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 858/1015 (84%), Positives = 911/1015 (89%), Gaps = 69/1015 (6%) Query: 1 MDEVLKAKRQQNAGSSSRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFDT 60 MDEV+KAKRQQ GS++RAITIRGAREHNLKN+D+EIPRDKLVVFTGLSGSGKSSLAFDT Sbjct: 1 MDEVIKAKRQQ-PGSATRAITIRGAREHNLKNVDLEIPRDKLVVFTGLSGSGKSSLAFDT 59 Query: 61 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 120 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI Sbjct: 60 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 119 Query: 121 YDYMRLLWARVGVPYSPATGLPIESQIVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYKK 180 YDYMRLLWARVGVPYSPATGLPIESQ VSQMVDRVLALPEGTRLYLLAPVVRGRKGEY+K Sbjct: 120 YDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRK 179 Query: 181 ELAEYLKKGFQRVKIDGTFYELSEAPALDKKFPHDIDVVVDRIVVRPDLAQRLAESFETA 240 ELAEYLKKGFQRVKIDG F+EL++APALDKKFPHD+DVVVDRIVVRPD+ QRLAESFETA Sbjct: 180 ELAEYLKKGFQRVKIDGAFHELADAPALDKKFPHDMDVVVDRIVVRPDIGQRLAESFETA 239 Query: 241 LKLAEGLAVIEYADAPAAAAQDEK--------------------KEDKKKTAKIHDKSGP 280 LKLAEGLAVIEYADAPA++ + ++KKK AKIHDKSGP Sbjct: 240 LKLAEGLAVIEYADAPASSPGRTEGARPGDPSSSKEMDGGVKPGHDEKKKVAKIHDKSGP 299 Query: 281 ERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPACGGLGVEQHIDEDLVIPDKDLTL 340 ERILFSEKFACPVSGFT+PEIEPRLFSFNNPYGACP CGGLG+EQH+DEDL+IPDK+ TL Sbjct: 300 ERILFSEKFACPVSGFTLPEIEPRLFSFNNPYGACPKCGGLGIEQHVDEDLIIPDKEQTL 359 Query: 341 RKGAIAPWAKSSSPYYIQTLTALGKHYKFTLDTKWKDLTKKVQNALLHGSGDDEIKFSYE 400 RKGAIAPWAKSSSPYY+QTLTALGK YKFTLDTKWKDL KK Q ALLHGSGDDEIKFSYE Sbjct: 360 RKGAIAPWAKSSSPYYLQTLTALGKFYKFTLDTKWKDLPKKTQAALLHGSGDDEIKFSYE 419 Query: 401 DGVRSYDTKKPFEGVITNINRRYRETESEWAREELGKYFSDVPCAGCNGHRLKPEALCVK 460 DGVRSYDT+KPFEGV+TNI+RR+RETESEWAREELGKYFSDVPC C G+RLKPEALCV+ Sbjct: 420 DGVRSYDTRKPFEGVVTNIDRRFRETESEWAREELGKYFSDVPCEACKGYRLKPEALCVR 479 Query: 461 IGGKHIGEISELSVKRAGEWFETVPEALNAQQNEIATRILKEIRERLTFLLDVGLNYLTL 520 IGGKHIGEISELSV+ AGEWFETVP+ L+AQQNEIA R+LKEIR+RL+FLLDVGLNYLTL Sbjct: 480 IGGKHIGEISELSVRHAGEWFETVPKMLSAQQNEIAGRVLKEIRDRLSFLLDVGLNYLTL 539 Query: 521 SRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNT 580 SR+SGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLL+TLKRLR+LGNT Sbjct: 540 SRASGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLETLKRLRNLGNT 599 Query: 581 VVVVEHDEDAIRLADYVLDIGPGAGMHGGHIVAEGTPDQIMRNPKSLTGKYLTGELSVPV 640 V+VVEHDEDAIRLAD+VLDIGPGAG+HGGHIVA+GTP IMRNPKSLTGKYLTG+L+V V Sbjct: 600 VIVVEHDEDAIRLADHVLDIGPGAGVHGGHIVAQGTPADIMRNPKSLTGKYLTGDLAVEV 659 Query: 641 PDRRPPNHRRTIKVVNARGNNLKNVSAEIPLGLFTCVTGVSGX----------------- 683 P+RRPPNHRRTIKVVNARGNNLKNV+AEIPLGLFTC+TGVSG Sbjct: 660 PERRPPNHRRTIKVVNARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTVYKAIARR 719 Query: 684 ------------------------------IGRTPRSNPATYTGAFTPIREWFAGLPEAK 713 IGRTPRSNPATYTGAFTPIREWFAGLPEAK Sbjct: 720 LNNASEGAAPHDRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAK 779 Query: 714 ARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLFKG 773 ARGY PGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLFKG Sbjct: 780 ARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLFKG 839 Query: 774 KSIADVLDMTVEEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAK 833 KSI+DVLDMTVEEAAEFFKAVPRVRETF+TLHRVGLDYI VGQQATTLSGGEAQRVKLAK Sbjct: 840 KSISDVLDMTVEEAAEFFKAVPRVRETFKTLHRVGLDYIRVGQQATTLSGGEAQRVKLAK 899 Query: 834 ELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVI 893 ELSKRATGRTLYILDEPTTGLHFHDV KLLEVLHELVAQGNTVVVIEHNLEVIKTADWVI Sbjct: 900 ELSKRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVI 959 Query: 894 DLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLAPVLKKANSKPRKSSASEAAE 948 DLGPEGGDGGGE+VAWGPPEDI KA RS+TGKFL PVL+KA KP++ ASEAAE Sbjct: 960 DLGPEGGDGGGEVVAWGPPEDIAKASRSHTGKFLRPVLEKAG-KPKRRDASEAAE 1013 >ref|YP_004109007.1| excinuclease ABC subunit A [Rhodopseudomonas palustris DX-1] gb|ADU44274.1| excinuclease ABC, A subunit [Rhodopseudomonas palustris DX-1] Length = 1029 Score = 1693 bits (4385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 868/1029 (84%), Positives = 905/1029 (87%), Gaps = 81/1029 (7%) Query: 1 MDEVLKAKRQQNAGSSSRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFDT 60 MDEV+KAKRQ A SS AITIRGAREHNLKN+DV IPRDKLVVFTGLSGSGKSSLAFDT Sbjct: 1 MDEVIKAKRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDT 60 Query: 61 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 120 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI Sbjct: 61 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 120 Query: 121 YDYMRLLWARVGVPYSPATGLPIESQIVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYKK 180 YDYMRLLWARVGVPYSPATGLPIESQ VSQMVDRVLALPEGTRLYLLAPVVRGRKGEY+K Sbjct: 121 YDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRK 180 Query: 181 ELAEYLKKGFQRVKIDGTFYELSEAPALDKKFPHDIDVVVDRIVVRPDLAQRLAESFETA 240 ELA++LKKGFQRVKIDG F+EL+EAP LDKKFPHDIDVVVDRIVVRPD+ QRLAESFETA Sbjct: 181 ELADWLKKGFQRVKIDGAFHELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETA 240 Query: 241 LKLAEGLAVIEYADAP----------AAAAQDEK-KEDK--------------------- 268 LKLAEGLAVIE+ADAP A A QDE K K Sbjct: 241 LKLAEGLAVIEFADAPPPPPSFETRPAGAPQDEDGKRGKPKKGAPHPEEAQSAVSKGEAA 300 Query: 269 -KKTAKIHDKSGPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPACGGLGVEQHI 327 KK AKIHDKSGPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACP CGGLG+EQHI Sbjct: 301 GKKVAKIHDKSGPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPECGGLGIEQHI 360 Query: 328 DEDLVIPDKDLTLRKGAIAPWAKSSSPYYIQTLTALGKHYKFTLDTKWKDLTKKVQNALL 387 D DLV+PDK+L+LRKGAIAPWAKSSSPYY+QTLTAL KHYKFTLDTKWKDL KKVQN LL Sbjct: 361 DADLVVPDKELSLRKGAIAPWAKSSSPYYLQTLTALAKHYKFTLDTKWKDLPKKVQNVLL 420 Query: 388 HGSGDDEIKFSYEDGVRSYDTKKPFEGVITNINRRYRETESEWAREELGKYFSDVPCAGC 447 HGSGDDEIKFSYEDGVRSYDTKKPFEGV+TNI RR+RETESEWAREELGKYFSDVPC C Sbjct: 421 HGSGDDEIKFSYEDGVRSYDTKKPFEGVVTNIERRFRETESEWAREELGKYFSDVPCDAC 480 Query: 448 NGHRLKPEALCVKIGGKHIGEISELSVKRAGEWFETVPEALNAQQNEIATRILKEIRERL 507 +GHRLKPEALCVKIGGKHIGE+SELSVK AG+WF +VP+ LNAQQNEIA RILKEIR+RL Sbjct: 481 HGHRLKPEALCVKIGGKHIGEVSELSVKAAGDWFASVPKLLNAQQNEIAVRILKEIRDRL 540 Query: 508 TFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARL 567 +FLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARL Sbjct: 541 SFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARL 600 Query: 568 LDTLKRLRDLGNTVVVVEHDEDAIRLADYVLDIGPGAGMHGGHIVAEGTPDQIMRNPKSL 627 LDTLKRLRDLGNTV+VVEHDEDAI LAD+VLDIGPGAG+HGGHI+A+GTP +IMRNPKSL Sbjct: 601 LDTLKRLRDLGNTVIVVEHDEDAILLADHVLDIGPGAGVHGGHIIAQGTPAEIMRNPKSL 660 Query: 628 TGKYLTGELSVPVPDRRPPNHRRTIKVVNARGNNLKNVSAEIPLGLFTCVTGVSG----- 682 TGKYLTGELSVPVP+RRPPNHRRT+K+V ARGNNLKNV+AEIPLGLFTCVTGVSG Sbjct: 661 TGKYLTGELSVPVPERRPPNHRRTLKLVGARGNNLKNVTAEIPLGLFTCVTGVSGGGKST 720 Query: 683 ------------------------------------------XIGRTPRSNPATYTGAFT 700 IGRTPRSNPATYTGAFT Sbjct: 721 LLIDTFYKAIARKLNNASEPPAPHDRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFT 780 Query: 701 PIREWFAGLPEAKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGK 760 PIREWFAGLPE+KARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCD CKGK Sbjct: 781 PIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGK 840 Query: 761 RYNRETLEVLFKGKSIADVLDMTVEEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATT 820 RYNRETL+VLFKGKSIADVLDMTVEEAAEFFKAVPRVRETF+TL RVGLDYIHVGQQATT Sbjct: 841 RYNRETLDVLFKGKSIADVLDMTVEEAAEFFKAVPRVRETFKTLQRVGLDYIHVGQQATT 900 Query: 821 LSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIE 880 LSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIE Sbjct: 901 LSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIE 960 Query: 881 HNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLAPVL-KKANSKPR 939 HNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFL PVL KK +K Sbjct: 961 HNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPRSYTGKFLKPVLEKKGPTKAV 1020 Query: 940 KSSASEAAE 948 K EAAE Sbjct: 1021 KRKTDEAAE 1029 >ref|YP_001992135.1| excinuclease ABC subunit A [Rhodopseudomonas palustris TIE-1] gb|ACF01660.1| excinuclease ABC, A subunit [Rhodopseudomonas palustris TIE-1] Length = 1005 Score = 1689 bits (4373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 867/1005 (86%), Positives = 906/1005 (90%), Gaps = 57/1005 (5%) Query: 1 MDEVLKAKRQQNAGSSSRAITIRGAREHNLKNIDVEIPRDKLVVFTGLSGSGKSSLAFDT 60 MDEV+KAKRQ A SS AITIRGAREHNLKN+DV IPRDKLVVFTGLSGSGKSSLAFDT Sbjct: 1 MDEVIKAKRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDT 60 Query: 61 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 120 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI Sbjct: 61 IYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEI 120 Query: 121 YDYMRLLWARVGVPYSPATGLPIESQIVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYKK 180 YDYMRLLWARVGVPYSPATGLPIESQ VSQMVDRVLALPEGTRLYLLAPVVRGRKGEY+K Sbjct: 121 YDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRK 180 Query: 181 ELAEYLKKGFQRVKIDGTFYELSEAPALDKKFPHDIDVVVDRIVVRPDLAQRLAESFETA 240 ELA++LKKGFQRVKIDG F+EL+EAP LDKKFPHDIDVVVDRIVVRPD+ QRLAESFETA Sbjct: 181 ELADWLKKGFQRVKIDGAFHELAEAPVLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETA 240 Query: 241 LKLAEGLAVIEYADAPAAAAQDEKKEDK---------KKTAKIHDKSGPERILFSEKFAC 291 LKLAEGLAVIEYADAPAA E +D+ KK AKIHDKSG ERILFSEKFAC Sbjct: 241 LKLAEGLAVIEYADAPAAPPAAEPGQDEPADKKKKADKKVAKIHDKSGAERILFSEKFAC 300 Query: 292 PVSGFTIPEIEPRLFSFNNPYGACPACGGLGVEQHIDEDLVIPDKDLTLRKGAIAPWAKS 351 PVSGFTIPEIEPRLFSFNNPYGACP CGGLG+EQHID DLV+PDK+LTLRKGAIAPWAKS Sbjct: 301 PVSGFTIPEIEPRLFSFNNPYGACPECGGLGIEQHIDADLVVPDKELTLRKGAIAPWAKS 360 Query: 352 SSPYYIQTLTALGKHYKFTLDTKWKDLTKKVQNALLHGSGDDEIKFSYEDGVRSYDTKKP 411 SSPYY+QTLTALGKHYKFTLDTKWKDL KKVQN LLHGSGDDEIKFSYEDGVRSYDTKKP Sbjct: 361 SSPYYLQTLTALGKHYKFTLDTKWKDLPKKVQNVLLHGSGDDEIKFSYEDGVRSYDTKKP 420 Query: 412 FEGVITNINRRYRETESEWAREELGKYFSDVPCAGCNGHRLKPEALCVKIGGKHIGEISE 471 FEGV+TNI RR+RETESEWAREELGKYFSDVPC C+GHRLKPEALCVK+GGKHIGE+SE Sbjct: 421 FEGVVTNIERRFRETESEWAREELGKYFSDVPCDACHGHRLKPEALCVKVGGKHIGEVSE 480 Query: 472 LSVKRAGEWFETVPEALNAQQNEIATRILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGE 531 LSVK AG+WF +VP+ LN QQNEIA RILKEIR+RL+FLLDVGLNYLTLSRSSGTLSGGE Sbjct: 481 LSVKAAGDWFASVPKLLNTQQNEIAVRILKEIRDRLSFLLDVGLNYLTLSRSSGTLSGGE 540 Query: 532 SQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVVVVEHDEDAI 591 SQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTV+VVEHDEDAI Sbjct: 541 SQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAI 600 Query: 592 RLADYVLDIGPGAGMHGGHIVAEGTPDQIMRNPKSLTGKYLTGELSVPVPDRRPPNHRRT 651 LAD+VLDIGPGAG+HGGHI+A+GTP +IMRNPKSLTGKYLTGELSVPVP+RRPPNHRRT Sbjct: 601 LLADHVLDIGPGAGVHGGHIIAQGTPAEIMRNPKSLTGKYLTGELSVPVPERRPPNHRRT 660 Query: 652 IKVVNARGNNLKNVSAEIPLGLFTCVTGVSGX---------------------------- 683 +K+VNARGNNLKNV+AEIPLGLFTCVTGVSG Sbjct: 661 LKLVNARGNNLKNVTAEIPLGLFTCVTGVSGGGKSTLLIDTFYKAIARKLNNASEPPAPH 720 Query: 684 -------------------IGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSF 724 IGRTPRSNPATYTGAFTPIREWFAGLPE+KARGYEPGRFSF Sbjct: 721 DRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPESKARGYEPGRFSF 780 Query: 725 NVKGGRCEACQGDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVLFKGKSIADVLDMTV 784 NVKGGRCEACQGDGVIKIEMHFLPDVYVTCD CKGKRYNRETL+VLFKGKSIADVLDMTV Sbjct: 781 NVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLDVLFKGKSIADVLDMTV 840 Query: 785 EEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTL 844 EEAAEFFKAVPRVRETF+TL RVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTL Sbjct: 841 EEAAEFFKAVPRVRETFKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTL 900 Query: 845 YILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGG 904 YILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGG Sbjct: 901 YILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGG 960 Query: 905 EIVAWGPPEDIVKAPRSYTGKFLAPVL-KKANSKPRKSSASEAAE 948 EIVAWGPPEDIVKAPRSYTGKFL PVL KK ++K K A EAAE Sbjct: 961 EIVAWGPPEDIVKAPRSYTGKFLKPVLEKKQSAKATKRRADEAAE 1005