BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0088.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767712.1| hypothetical protein blr1072 [Bradyrhizobium ja...   182   1e-44
ref|YP_578840.1| hypothetical protein Nham_3652 [Nitrobacter ham...   170   6e-41
ref|ZP_08628207.1| photosynthetic reaction center protein [Brady...    92   2e-17
ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...    89   2e-16
ref|ZP_08630809.1| hypothetical protein CSIRO_3919 [Bradyrhizobi...    85   4e-15

>ref|NP_767712.1| hypothetical protein blr1072 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46337.1| blr1072 [Bradyrhizobium japonicum USDA 110]
          Length = 121

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 97/110 (88%)

Query: 1   MHHTLVPSDRVEHVCVFGRDGTKLGSIERLMLDKVSGTVAYAIIKTGGVLSTHHHYPVRW 60
           M HT+VPSDRVEHV V+GRDGTKLG+IERLMLDKVSG VAYA+IKTGG+L  HHHYPV+W
Sbjct: 12  MQHTMVPSDRVEHVAVYGRDGTKLGTIERLMLDKVSGMVAYAVIKTGGLLGAHHHYPVQW 71

Query: 61  AALRFDPVRQAFEAEVTLEDLRAGPSEFDGDEFDWGDRSQLYTHPNYWAV 110
           +AL++D  RQAF+ E+T+++  +GP EFDGDEFDWGDRS+ Y HPNYW+V
Sbjct: 72  SALKYDRGRQAFQVELTMDEFSSGPCEFDGDEFDWGDRSRSYPHPNYWSV 121


>ref|YP_578840.1| hypothetical protein Nham_3652 [Nitrobacter hamburgensis X14]
 gb|ABE64380.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 110

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 92/110 (83%)

Query: 1   MHHTLVPSDRVEHVCVFGRDGTKLGSIERLMLDKVSGTVAYAIIKTGGVLSTHHHYPVRW 60
           MHHT+VPSDRVEHV V   DG KLG IERLMLDKVSGTVAYA+IKTGG+L +HHHYP+ W
Sbjct: 1   MHHTMVPSDRVEHVAVHSWDGAKLGIIERLMLDKVSGTVAYAVIKTGGLLGSHHHYPILW 60

Query: 61  AALRFDPVRQAFEAEVTLEDLRAGPSEFDGDEFDWGDRSQLYTHPNYWAV 110
           +AL++D  RQ FE E+T+ +LRAGPSEFD + FDWGDR++ Y HP+YW V
Sbjct: 61  SALKYDAKRQVFETELTMRELRAGPSEFDDETFDWGDRTRSYPHPHYWTV 110


>ref|ZP_08628207.1| photosynthetic reaction center protein [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP09116.1| photosynthetic reaction center protein [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 120

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 3   HTLVPSDRVEHVCVFGRDGTKLGSIERLMLDKVSGTVAYAIIKTGGVLSTHHHY-PVRWA 61
           H LV SDRVE   VF  DG K+GSI+RLM+DKVSG VAYA++  GG L     Y P+ WA
Sbjct: 11  HRLVASDRVEGTRVFNADGRKIGSIKRLMIDKVSGNVAYAVLCFGGFLGVGEDYRPLPWA 70

Query: 62  ALRFDPVRQAFE--AEVTLEDLRAGPSEFDGDEFDWGDR 98
           +++++P  +A+E    +T E+L   PS     EFDWG+R
Sbjct: 71  SMKYNPAIEAYELLTLMTDEELSKAPSFGTDKEFDWGNR 109


>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 2   HHTLVPSDRVEHVCVFGRDGTKLGSIERLMLDKVSGTVAYAIIKTGGVLST-HHHYPVRW 60
           +  L+ SD+VE   V+G DG ++G+IER+M+DK+SG V+YA++  GG L   + HYP+ W
Sbjct: 14  YGNLIGSDKVEGTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGLGNDHYPLPW 73

Query: 61  AALRFDPVRQAFEAEVTLEDLRAGPSEFDGDEFDWGDRSQLYTHPNYWAV 110
            +L++D     +   VT + LR  P   D  E+DWGD +      +Y+ V
Sbjct: 74  PSLKYDTQLGGYVTAVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYYGV 123


>ref|ZP_08630809.1| hypothetical protein CSIRO_3919 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06341.1| hypothetical protein CSIRO_3919 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 119

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 1/108 (0%)

Query: 4   TLVPSDRVEHVCVFGRDGTKLGSIERLMLDKVSGTVAYAIIKTGGVLST-HHHYPVRWAA 62
           +L+ SD+VE   V+G DG K+GSIER+M+ K +G V+YA++  GG L     HYP+ WA+
Sbjct: 10  SLIGSDKVEGTAVYGADGEKIGSIERVMIQKTTGKVSYAVLSFGGFLGIGDDHYPLPWAS 69

Query: 63  LRFDPVRQAFEAEVTLEDLRAGPSEFDGDEFDWGDRSQLYTHPNYWAV 110
           L+++     ++  V +E L+  P   +  ++DWG  ++     +Y+ V
Sbjct: 70  LKYNTELGGYQTMVPVEKLKDAPHYANDSDWDWGSATRTKGLSDYYGV 117