BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0087.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771346.1| hypothetical protein bll4706 [Bradyrhizobium ja... 491 e-137 ref|YP_001240330.1| hypothetical protein BBta_4384 [Bradyrhizobi... 477 e-132 ref|YP_001205989.1| putative signal peptide [Bradyrhizobium sp. ... 451 e-125 ref|YP_003694497.1| 40-residue YVTN family beta-propeller repeat... 383 e-104 ref|ZP_06886708.1| 40-residue YVTN family beta-propeller repeat ... 327 1e-87 >ref|NP_771346.1| hypothetical protein bll4706 [Bradyrhizobium japonicum USDA 110] dbj|BAC49971.1| bll4706 [Bradyrhizobium japonicum USDA 110] Length = 315 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/301 (82%), Positives = 271/301 (90%) Query: 12 SLGAARAEEAFVTNQLSDDLTVVDLATSKPVATIAIGGKPAGVAVSNDGRFAYVTSPDAK 71 LG+A AEEAFVTNQLSDDL VVDLAT++ VATI IGGKPAG+AVS DGRFAYVTSPDAK Sbjct: 15 CLGSASAEEAFVTNQLSDDLMVVDLATARAVATIPIGGKPAGIAVSADGRFAYVTSPDAK 74 Query: 72 AVTVVDASTRKVVGRVDVGGGPLGIAVAPDGATVYVADWYAAVVRVIDARERRVAASIAV 131 AVTVVDA+TR+V GR++VGGGPLGIAVAPDG TVYVADWYAA VRVIDA R V ASIAV Sbjct: 75 AVTVVDAATRQVAGRIEVGGGPLGIAVAPDGRTVYVADWYAAAVRVIDAASRSVRASIAV 134 Query: 132 GASPSGLAVTPDGLLLLSADRDDDSVSIIDTASRERRGIVKVGTRPFGVTIDADGKRAYT 191 GASPSGLAVTPDG LLLSADRDDDSVS++DTA+R R+ ++KVGTRPFGVTID DGKRAYT Sbjct: 135 GASPSGLAVTPDGKLLLSADRDDDSVSVVDTATRARKAVIKVGTRPFGVTIDTDGKRAYT 194 Query: 192 ANVGTNDVSVIDIATAREVGRVHVGLRPYAVALAQGRGFVTDQYDGKVSVFDLATLQPVR 251 ANVG+N++SVIDIAT E+GRV VG+RPYAVALAQGRGFVTDQY G VSVFDLATL+PV+ Sbjct: 195 ANVGSNNISVIDIATGSEIGRVPVGMRPYAVALAQGRGFVTDQYGGTVSVFDLATLKPVK 254 Query: 252 RITVGDYPEGIEATADGKRILVANWESNTLSVIDAAELKVIGEVKVGDGPRAFGAFLRRT 311 RI VGDYPEGI ATADGKRI+VA WESNTL +ID E KVIGEVK GDGPRAFGAFLRRT Sbjct: 255 RINVGDYPEGINATADGKRIIVACWESNTLDIIDTTEGKVIGEVKTGDGPRAFGAFLRRT 314 Query: 312 E 312 E Sbjct: 315 E 315 >ref|YP_001240330.1| hypothetical protein BBta_4384 [Bradyrhizobium sp. BTAi1] gb|ABQ36424.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 314 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 238/304 (78%), Positives = 269/304 (88%) Query: 7 VALLASLGAARAEEAFVTNQLSDDLTVVDLATSKPVATIAIGGKPAGVAVSNDGRFAYVT 66 V L+++ A EEAFVTNQLSDDLT+V+LATS PVATI IGGKPAGVAV+ DGRFAYV Sbjct: 11 VLLVSTTCTAHTEEAFVTNQLSDDLTIVNLATSTPVATIPIGGKPAGVAVAADGRFAYVA 70 Query: 67 SPDAKAVTVVDASTRKVVGRVDVGGGPLGIAVAPDGATVYVADWYAAVVRVIDARERRVA 126 SPD KAV+VVDA+ RKVVGR++VGGGPLGIAV PDGATVYVADWY A +R+IDA+ R V Sbjct: 71 SPDDKAVSVVDAAERKVVGRIEVGGGPLGIAVTPDGATVYVADWYNAAIRIIDAKTRAVT 130 Query: 127 ASIAVGASPSGLAVTPDGLLLLSADRDDDSVSIIDTASRERRGIVKVGTRPFGVTIDADG 186 ASIAVGASPSGLAVTPDG LLLSADRDDD VS+IDTA++ R +KVGTRPFGVTID DG Sbjct: 131 ASIAVGASPSGLAVTPDGKLLLSADRDDDMVSVIDTATQTRLKTIKVGTRPFGVTIDGDG 190 Query: 187 KRAYTANVGTNDVSVIDIATAREVGRVHVGLRPYAVALAQGRGFVTDQYDGKVSVFDLAT 246 +RAYTANVG+NDVSVID+A AREVGR+ GLRPYAVALAQG+GFVTDQYDG V+VFD+A+ Sbjct: 191 QRAYTANVGSNDVSVIDLAEAREVGRIKTGLRPYAVALAQGKGFVTDQYDGTVTVFDVAS 250 Query: 247 LQPVRRITVGDYPEGIEATADGKRILVANWESNTLSVIDAAELKVIGEVKVGDGPRAFGA 306 LQP+ RITVGDYPEGI ATADG+RI+VANWESN LSVID A LKV GE+KVG+GPRAFG+ Sbjct: 251 LQPLTRITVGDYPEGIAATADGRRIIVANWESNILSVIDVATLKVTGEIKVGNGPRAFGS 310 Query: 307 FLRR 310 FLRR Sbjct: 311 FLRR 314 >ref|YP_001205989.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL77764.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 321 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 241/306 (78%), Positives = 266/306 (86%) Query: 5 VLVALLASLGAARAEEAFVTNQLSDDLTVVDLATSKPVATIAIGGKPAGVAVSNDGRFAY 64 VL A L AEEAFVTNQLSDDLT+VDLATSKPVATI IGGKPAGVAV+ DGRFAY Sbjct: 16 VLGAFLFGSVPIHAEEAFVTNQLSDDLTIVDLATSKPVATIPIGGKPAGVAVAADGRFAY 75 Query: 65 VTSPDAKAVTVVDASTRKVVGRVDVGGGPLGIAVAPDGATVYVADWYAAVVRVIDARERR 124 V SPD KAV+++DA RKVVGRV+VGGGPLGIAVAPDGATVYVADWY A +RVIDA+ + Sbjct: 76 VASPDDKAVSIIDAVARKVVGRVEVGGGPLGIAVAPDGATVYVADWYNAAIRVIDAKTLK 135 Query: 125 VAASIAVGASPSGLAVTPDGLLLLSADRDDDSVSIIDTASRERRGIVKVGTRPFGVTIDA 184 V SIAVGASPSGLAVT DG LLLSADRDDD VS+ DTA+R+R +KVGTRPFGVTID Sbjct: 136 VTGSIAVGASPSGLAVTADGKLLLSADRDDDMVSVSDTATRQRLRTIKVGTRPFGVTIDT 195 Query: 185 DGKRAYTANVGTNDVSVIDIATAREVGRVHVGLRPYAVALAQGRGFVTDQYDGKVSVFDL 244 +GKRAYTANVG+NDVSVID+A RE+ R+ GLRPYAVALAQGRGFVTDQYDG VSVFD+ Sbjct: 196 EGKRAYTANVGSNDVSVIDLAEGREIARIKTGLRPYAVALAQGRGFVTDQYDGTVSVFDV 255 Query: 245 ATLQPVRRITVGDYPEGIEATADGKRILVANWESNTLSVIDAAELKVIGEVKVGDGPRAF 304 A+ QP++RITVGDYPEGIEATADG+RI+VANWESN LSVIDAA LKV E+KVGDGPRAF Sbjct: 256 ASQQPLKRITVGDYPEGIEATADGQRIIVANWESNILSVIDAAALKVTAEIKVGDGPRAF 315 Query: 305 GAFLRR 310 GAFLRR Sbjct: 316 GAFLRR 321 >ref|YP_003694497.1| 40-residue YVTN family beta-propeller repeat-containing protein [Starkeya novella DSM 506] gb|ADH89878.1| 40-residue YVTN family beta-propeller repeat protein [Starkeya novella DSM 506] Length = 320 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/312 (64%), Positives = 243/312 (77%), Gaps = 2/312 (0%) Query: 1 MRAIVLVALLASLGAARAEEAFVTNQLSDDLTVVDLATSKPVATIAIGGKPAGVAVSNDG 60 + A+V LLA L AA A+EAFVT+Q ++ L+VVDL T+K VAT+ I GKPAG+AVS DG Sbjct: 10 LFALVACTLLA-LPAA-ADEAFVTSQPAEMLSVVDLPTNKVVATLPIPGKPAGIAVSPDG 67 Query: 61 RFAYVTSPDAKAVTVVDASTRKVVGRVDVGGGPLGIAVAPDGATVYVADWYAAVVRVIDA 120 + A+VTSPD KA++++DA+TRKV RVDVGGGPLG+AV P G+ YVADWY V +DA Sbjct: 68 KRAFVTSPDGKALSILDAATRKVEHRVDVGGGPLGVAVHPSGSPAYVADWYQHRVIAVDA 127 Query: 121 RERRVAASIAVGASPSGLAVTPDGLLLLSADRDDDSVSIIDTASRERRGIVKVGTRPFGV 180 V + VG SPSGLAVTPDG LLLSADRD D+VS+IDTAS R +KVG RPFGV Sbjct: 128 ASGAVKGEVKVGDSPSGLAVTPDGRLLLSADRDSDAVSLIDTASLTRLASIKVGGRPFGV 187 Query: 181 TIDADGKRAYTANVGTNDVSVIDIATAREVGRVHVGLRPYAVALAQGRGFVTDQYDGKVS 240 TIDA+GKRAYTANV +NDVS+IDIA + +G VG RPYAVALA+GR FVTDQYD VS Sbjct: 188 TIDAEGKRAYTANVASNDVSIIDIAAGKLIGTAKVGQRPYAVALAKGRAFVTDQYDSTVS 247 Query: 241 VFDLATLQPVRRITVGDYPEGIEATADGKRILVANWESNTLSVIDAAELKVIGEVKVGDG 300 VFDL TL PV +I VGDYPEGIEA+ DG + VA WE+NTL VID A LKV+ +++V DG Sbjct: 248 VFDLETLAPVAKIAVGDYPEGIEASRDGALVYVACWEANTLDVIDTASLKVVRQIEVADG 307 Query: 301 PRAFGAFLRRTE 312 PRAFGAF+R+T+ Sbjct: 308 PRAFGAFIRKTQ 319 >ref|ZP_06886708.1| 40-residue YVTN family beta-propeller repeat protein [Methylosinus trichosporium OB3b] gb|EFH04757.1| 40-residue YVTN family beta-propeller repeat protein [Methylosinus trichosporium OB3b] Length = 342 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 175/291 (60%), Positives = 210/291 (72%) Query: 19 EEAFVTNQLSDDLTVVDLATSKPVATIAIGGKPAGVAVSNDGRFAYVTSPDAKAVTVVDA 78 +EAFVTNQ S D+T+VDLAT +P AT+AIGGKPAGVAVS DG AYVTSP+ K +TV+DA Sbjct: 49 DEAFVTNQGSGDVTIVDLATMRPAATLAIGGKPAGVAVSADGARAYVTSPEGKYLTVIDA 108 Query: 79 STRKVVGRVDVGGGPLGIAVAPDGATVYVADWYAAVVRVIDARERRVAASIAVGASPSGL 138 R+ + R+ + GGPLG+AVAPDG VYVAD Y + +D V A+ VG +PSG+ Sbjct: 109 RERRALRRIALEGGPLGLAVAPDGGRVYVADMYEGRLFAVDPEAGAVVATAQVGVTPSGV 168 Query: 139 AVTPDGLLLLSADRDDDSVSIIDTASRERRGIVKVGTRPFGVTIDADGKRAYTANVGTND 198 AVTPDG L+L + RD D ++ +D AS + G ++VG PFGVTIDA G RAYTANV ++D Sbjct: 169 AVTPDGRLILVSIRDADRIAFVDAASFRKIGEIEVGRHPFGVTIDAAGARAYTANVESDD 228 Query: 199 VSVIDIATAREVGRVHVGLRPYAVALAQGRGFVTDQYDGKVSVFDLATLQPVRRITVGDY 258 VSVIDIA R V VG RPY VALAQGRGFVTDQY VSVFDL TL PV + VG+Y Sbjct: 229 VSVIDIAARRVAATVKVGKRPYCVALAQGRGFVTDQYAEAVSVFDLTTLAPVGEVKVGEY 288 Query: 259 PEGIEATADGKRILVANWESNTLSVIDAAELKVIGEVKVGDGPRAFGAFLR 309 PEGI A+ DGK + VANW +N I A L V G+ K GDGPRAFGAF+R Sbjct: 289 PEGIGASRDGKTVYVANWFTNEFWSIAADSLTVTGKAKTGDGPRAFGAFIR 339