BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0080.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771358.1| hypothetical protein bll4718 [Bradyrhizobium ja...   161   4e-38
gb|ADF97758.1| hypothetical protein [uncultured bacterium]            159   1e-37
ref|ZP_07028108.1| conserved hypothetical protein [Afipia sp. 1N...   147   4e-34
ref|YP_004632747.1| hypothetical protein OCA5_c17920 [Oligotroph...   134   4e-30
ref|ZP_08629767.1| hypothetical protein CSIRO_2861 [Bradyrhizobi...   110   8e-23

>ref|NP_771358.1| hypothetical protein bll4718 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49983.1| bll4718 [Bradyrhizobium japonicum USDA 110]
          Length = 186

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 99/133 (74%), Gaps = 1/133 (0%)

Query: 1   MSDNRFFNTHRPWEDWVGMLLGVLIMVSPWFPMQVSGAVDIERSHLVLNSFMVGMLVLGI 60
           MSD  F NTHR WEDW GMLLG LI  SPWFP+Q S  +      +VLN+  VG++V G+
Sbjct: 55  MSDFGFLNTHRTWEDWCGMLLGALIAASPWFPIQDSSGI-AGHDTMVLNTVAVGLVVFGL 113

Query: 61  AQLEYVALHRWEEVASILLGLWLMASPLVFGYAEDHWLQFWHILLGALVAFIGALQLWQD 120
           +QLEYVAL RW+EVA+IL+GLWL+ SPLV GY+ + +L+ +H  LGA+   +G LQLWQD
Sbjct: 114 SQLEYVALQRWQEVATILVGLWLIVSPLVLGYSGEGFLRIYHTSLGAVAVILGVLQLWQD 173

Query: 121 WNLSEQELAKHPQ 133
           W++S+Q+L KH Q
Sbjct: 174 WDMSDQDLLKHGQ 186


>gb|ADF97758.1| hypothetical protein [uncultured bacterium]
          Length = 152

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)

Query: 1   MSDNRFFNTHRPWEDWVGMLLGVLIMVSPWFPMQVSGAVDIERSHLVLNSFMVGMLVLGI 60
           MSD  F NTHR WEDW GMLLG LI+ SPWFP Q   A+   ++  VLN+  +G+LV GI
Sbjct: 21  MSDFGFLNTHRTWEDWCGMLLGALIVASPWFPNQDQAAITGNQTA-VLNTVAIGLLVFGI 79

Query: 61  AQLEYVALHRWEEVASILLGLWLMASPLVFGYAEDHWLQFWHILLGALVAFIGALQLWQD 120
           +QLEYVAL RWEEVA+IL GLWL+ SP V GY+ D +L+ +H  LGA V  +G LQLWQD
Sbjct: 80  SQLEYVALQRWEEVATILAGLWLIVSPYVIGYSGDGFLRVYHTSLGAAVVLLGILQLWQD 139

Query: 121 WNLSEQELAKHPQ 133
           W+L++++L +H Q
Sbjct: 140 WDLNDRDLLRHGQ 152


>ref|ZP_07028108.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI50098.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 135

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 2/135 (1%)

Query: 1   MSDNRFFNTHRPWEDWVGMLLGVLIMVSPWFPMQVSGAVDI--ERSHLVLNSFMVGMLVL 58
           MS  RFF+THR WEDWVGMLLG+LI VSPW   +V+  + +  +   +++N+ +VG+L++
Sbjct: 1   MSGARFFDTHRTWEDWVGMLLGILIAVSPWMNGEVNYGLGLLSDPGLILMNTAVVGILII 60

Query: 59  GIAQLEYVALHRWEEVASILLGLWLMASPLVFGYAEDHWLQFWHILLGALVAFIGALQLW 118
           G++QLEY+AL RWEE   + L +WL+ SP VFGY+ D  L+FWH  LG  V  +  L+LW
Sbjct: 61  GLSQLEYIALRRWEEGCEMALAVWLIMSPYVFGYSTDGMLRFWHAALGGAVFLLATLKLW 120

Query: 119 QDWNLSEQELAKHPQ 133
           QDW LS++ELA+H Q
Sbjct: 121 QDWELSDRELARHGQ 135


>ref|YP_004632747.1| hypothetical protein OCA5_c17920 [Oligotropha carboxidovorans OM5]
 gb|AEI02930.1| hypothetical protein OCA4_c17920 [Oligotropha carboxidovorans OM4]
 gb|AEI06506.1| hypothetical protein OCA5_c17920 [Oligotropha carboxidovorans OM5]
          Length = 135

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 99/136 (72%), Gaps = 4/136 (2%)

Query: 1   MSDNRFFNTHRPWEDWVGMLLGVLIMVSPWFPMQVS---GAVDIERSHLVLNSFMVGMLV 57
           MS  RFF+THR WEDW GMLLG+LI +SPW    V+   G++ +    ++ N+ +VG+L+
Sbjct: 1   MSGARFFDTHRTWEDWGGMLLGLLIALSPWLNGDVNHGFGSLSLPGLAMI-NTAIVGILI 59

Query: 58  LGIAQLEYVALHRWEEVASILLGLWLMASPLVFGYAEDHWLQFWHILLGALVAFIGALQL 117
           +G++QLEYVAL RWEEV  I L +WL+ SP VFGY+ D  L+FWH  LG  V  + AL+L
Sbjct: 60  IGLSQLEYVALRRWEEVCEIALAIWLIMSPYVFGYSTDGMLRFWHAALGGAVLLLAALKL 119

Query: 118 WQDWNLSEQELAKHPQ 133
           WQDW+LS++ELA+H Q
Sbjct: 120 WQDWDLSDRELAQHGQ 135


>ref|ZP_08629767.1| hypothetical protein CSIRO_2861 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07622.1| hypothetical protein CSIRO_2861 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 117

 Score =  110 bits (275), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 19  MLLGVLIMVSPWFPMQVSGAVDIERSHLV--LNSFMVGMLVLGIAQLEYVALHRWEEVAS 76
           M LG+LI +SPW   + +  +       V  LN+  VG+LV G++QLEY+ L RWEE   
Sbjct: 1   MALGLLIALSPWMTGEANNGLGAHADSGVALLNAVCVGILVFGLSQLEYIVLRRWEEACE 60

Query: 77  ILLGLWLMASPLVFGYAEDHWLQFWHILLGALVAFIGALQLWQDWNLSEQELAKHPQ 133
           I LG WL+ASP +F Y+    L+ WH   G +V  +G L+LWQDW+LS++ELA+H Q
Sbjct: 61  IALGFWLIASPHIFAYSGGGTLRLWHTAFGGVVILLGVLKLWQDWDLSDEELARHGQ 117