BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0074.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771363.1| hypothetical protein blr4723 [Bradyrhizobium ja... 417 e-114 ref|YP_569900.1| hypothetical protein RPD_2771 [Rhodopseudomonas... 403 e-110 ref|YP_001240340.1| hypothetical protein BBta_4394 [Bradyrhizobi... 389 e-106 ref|YP_001205999.1| hypothetical protein BRADO4022 [Bradyrhizobi... 387 e-105 ref|YP_486339.1| hypothetical protein RPB_2726 [Rhodopseudomonas... 379 e-103 >ref|NP_771363.1| hypothetical protein blr4723 [Bradyrhizobium japonicum USDA 110] dbj|BAC49988.1| blr4723 [Bradyrhizobium japonicum USDA 110] Length = 309 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 233/300 (77%), Positives = 250/300 (83%), Gaps = 3/300 (1%) Query: 1 MATSYQGNVTSMTQSGQGAASAPVIRTIGLSDLHHALRLGWEDFKAVPSHAIILCLIYPV 60 MAT YQGNV +M A+ P+IRTI LSDLH ALR GWEDFKAVPSHAIILC+IYPV Sbjct: 8 MATLYQGNVPTMAPPAD--AAGPIIRTIQLSDLHDALRRGWEDFKAVPSHAIILCVIYPV 65 Query: 61 LGLVLARTVHGYSVLPLLFPLAAGFALLGPFAAIGLYEMSRRREDGGEASAWDAMEVFRS 120 LGLVLAR V GYSVLPLLFPLAAGFAL+GPFAA+GLYE+S RRE EASAWDAMEV RS Sbjct: 66 LGLVLARVVMGYSVLPLLFPLAAGFALIGPFAALGLYELSSRRERHEEASAWDAMEVLRS 125 Query: 121 PSFGAMLGVGTLLFALFVTWIATAQAIYTAVFGYETAANIPDFAARVLTTQQGWWLIVVG 180 PSFGAMLG+GTLL ALFVTW+ATAQAIY A FGYE I DF RVLTT+QGWWLIVVG Sbjct: 126 PSFGAMLGLGTLLLALFVTWVATAQAIYVAAFGYEGVTGISDFITRVLTTRQGWWLIVVG 185 Query: 181 CSVGFLFALVALCISVIAFPMMLDRQATAGEAMVTSMRAVAQNPVPMAAWGLIVAVLLVL 240 C GFLFAL ALCIS ++FP+MLDR A A +AMVTS+R VA+NPVPMAAWGLIVAVLL L Sbjct: 186 CGTGFLFALAALCISAVSFPLMLDRHAGAFDAMVTSLRVVARNPVPMAAWGLIVAVLLAL 245 Query: 241 GTIPFFLGLAVVIPLLGHATWHLYREVIVKDPNAR-PVIPEPRERKPAADFPANLFPWRR 299 GTIP FLGLAVVIPLLGHATWHLYR+VIV DP AR P R RKPAADFPANLFPWR Sbjct: 246 GTIPAFLGLAVVIPLLGHATWHLYRKVIVSDPGARPVPPPPHRPRKPAADFPANLFPWRN 305 >ref|YP_569900.1| hypothetical protein RPD_2771 [Rhodopseudomonas palustris BisB5] gb|ABE39999.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 300 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/304 (67%), Positives = 244/304 (80%), Gaps = 5/304 (1%) Query: 1 MATSYQGNVTSMTQSGQGAASAPVIRTIGLSDLHHALRLGWEDFKAVPSHAIILCLIYPV 60 MAT+Y ++ G AA+ P +R I +DLH ALR GW+DFKAVPSHA++LC+IYPV Sbjct: 1 MATTYPAKAPNVRPIG--AAAEPPVRRIAFADLHDALRRGWDDFKAVPSHAVVLCVIYPV 58 Query: 61 LGLVLARTVHGYSVLPLLFPLAAGFALLGPFAAIGLYEMSRRREDGGEASAWDAMEVFRS 120 LGLVLAR V GYSVLPLLFPLAAGFAL+GPFAA+GLYE+SRRRE G +ASAW A +V RS Sbjct: 59 LGLVLARLVLGYSVLPLLFPLAAGFALIGPFAALGLYELSRRREIGQDASAWHAFDVLRS 118 Query: 121 PSFGAMLGVGTLLFALFVTWIATAQAIYTAVFGYETAANIPDFAARVLTTQQGWWLIVVG 180 PSFGAMLG+G +L A+FV WIATAQAIY + FG AA IPDF RVLTT +GW LIV+G Sbjct: 119 PSFGAMLGLGAMLLAVFVVWIATAQAIYVSTFGNAPAAAIPDFVTRVLTTPEGWTLIVLG 178 Query: 181 CSVGFLFALVALCISVIAFPMMLDRQATAGEAMVTSMRAVAQNPVPMAAWGLIVAVLLVL 240 C VGFLFA+ ALC+SV++FPMMLDR A GEA+ S+R VA+NP+ MAAWGLIVA LLV+ Sbjct: 179 CGVGFLFAVAALCVSVVSFPMMLDRHAGVGEAVAASLRVVARNPLEMAAWGLIVAALLVI 238 Query: 241 GTIPFFLGLAVVIPLLGHATWHLYREVIVKDPNARPVIPEPRE-RKPAADFPANLFPWRR 299 G++P FLGLAVVIPLLGHATWHLYR+VI +PN P IP+P ++ AADFPA LF W+R Sbjct: 239 GSLPAFLGLAVVIPLLGHATWHLYRKVIEPNPNP-PAIPQPNPIKRSAADFPATLFQWKR 297 Query: 300 GDRG 303 D+G Sbjct: 298 -DKG 300 >ref|YP_001240340.1| hypothetical protein BBta_4394 [Bradyrhizobium sp. BTAi1] gb|ABQ36434.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 303 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/303 (71%), Positives = 247/303 (81%), Gaps = 2/303 (0%) Query: 1 MATSYQGNVTSMTQSGQGAASAPVIRTIGLSDLHHALRLGWEDFKAVPSHAIILCLIYPV 60 MAT Y NV + + A+ IRTI LS L ALRLGW+DFKAVPSHA++LC IYPV Sbjct: 1 MAT-YHSNVAAHVRPADEVAAEITIRTIDLSSLMRALRLGWDDFKAVPSHAVMLCAIYPV 59 Query: 61 LGLVLARTVHGYSVLPLLFPLAAGFALLGPFAAIGLYEMSRRREDGGEASAWDAMEVFRS 120 LGLVLAR V GY+VLPLLFPLAAGFALLGPFAA+GLYE+S RR+ G EASAWDA EV RS Sbjct: 60 LGLVLARAVFGYAVLPLLFPLAAGFALLGPFAALGLYELSSRRDRGEEASAWDAFEVLRS 119 Query: 121 PSFGAMLGVGTLLFALFVTWIATAQAIYTAVFGYETAANIPDFAARVLTTQQGWWLIVVG 180 PSFG+MLG+GTLL ALFVTW+ATAQAIY AVFGY AA + +F RV+TT QGWWL+ VG Sbjct: 120 PSFGSMLGLGTLLLALFVTWVATAQAIYVAVFGYGGAAGVGEFLQRVVTTPQGWWLMAVG 179 Query: 181 CSVGFLFALVALCISVIAFPMMLDRQATAGEAMVTSMRAVAQNPVPMAAWGLIVAVLLVL 240 C GFLFAL+ALC+S+++FP+MLDR A A EA+VTS+R A+NPVP+AAWGLIVAVLLV Sbjct: 180 CGAGFLFALLALCLSIVSFPLMLDRHAGALEAIVTSLRVAARNPVPVAAWGLIVAVLLVA 239 Query: 241 GTIPFFLGLAVVIPLLGHATWHLYREVIVKDPN-ARPVIPEPRERKPAADFPANLFPWRR 299 GTIPFFLGLAVVIP+LGHATWHLYRE I P+ AR V P PR KPAADFPANLFPWR Sbjct: 240 GTIPFFLGLAVVIPVLGHATWHLYREAIAIHPDAARIVPPAPRGSKPAADFPANLFPWRS 299 Query: 300 GDR 302 DR Sbjct: 300 RDR 302 >ref|YP_001205999.1| hypothetical protein BRADO4022 [Bradyrhizobium sp. ORS 278] emb|CAL77774.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 309 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 214/303 (70%), Positives = 243/303 (80%), Gaps = 2/303 (0%) Query: 1 MATSYQGNVTSMTQSGQGAASAPVIRTIGLSDLHHALRLGWEDFKAVPSHAIILCLIYPV 60 MAT Y NV + + A+ IR I S L ALRLGW+DFKAVPSHA++LC IYPV Sbjct: 7 MAT-YHSNVAAHVRPADEVAAEITIRKIDFSSLMRALRLGWDDFKAVPSHALMLCAIYPV 65 Query: 61 LGLVLARTVHGYSVLPLLFPLAAGFALLGPFAAIGLYEMSRRREDGGEASAWDAMEVFRS 120 LGLVLAR V GY+VLPLLFPLAAGFALLGPFAA+GLYE+S RR+ G EA AWDA EV RS Sbjct: 66 LGLVLARAVFGYAVLPLLFPLAAGFALLGPFAALGLYELSSRRDRGEEAGAWDAFEVLRS 125 Query: 121 PSFGAMLGVGTLLFALFVTWIATAQAIYTAVFGYETAANIPDFAARVLTTQQGWWLIVVG 180 PSFG+MLG+GTLL ALFVTW+ATAQAIY AVFGY AA + DF RV TT QGWWL+ VG Sbjct: 126 PSFGSMLGLGTLLLALFVTWVATAQAIYVAVFGYGGAAGVSDFVQRVFTTPQGWWLMAVG 185 Query: 181 CSVGFLFALVALCISVIAFPMMLDRQATAGEAMVTSMRAVAQNPVPMAAWGLIVAVLLVL 240 C GFLFAL+ALC+S+++FP+MLDR A A EA+VTS+R VAQNPVP+A WGLIVAVLLV Sbjct: 186 CGAGFLFALLALCLSIVSFPLMLDRHAGALEAVVTSLRVVAQNPVPVATWGLIVAVLLVA 245 Query: 241 GTIPFFLGLAVVIPLLGHATWHLYREVIVKDPNARPVI-PEPRERKPAADFPANLFPWRR 299 GTIPFFLGLAVVIP+LGHATWHLYRE I P+A ++ P PR KPAADFPANLFPWR Sbjct: 246 GTIPFFLGLAVVIPVLGHATWHLYREAIAIHPDAAEIVPPAPRPSKPAADFPANLFPWRS 305 Query: 300 GDR 302 D+ Sbjct: 306 RDQ 308 >ref|YP_486339.1| hypothetical protein RPB_2726 [Rhodopseudomonas palustris HaA2] gb|ABD07428.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 300 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/299 (64%), Positives = 233/299 (77%), Gaps = 2/299 (0%) Query: 1 MATSYQGNVTSMTQSGQGAASAPVIRTIGLSDLHHALRLGWEDFKAVPSHAIILCLIYPV 60 MAT Y + GAA+ P + I L+DLH ALR GW+DFKAVPSHA++LC+IYPV Sbjct: 1 MATIYPAEASDARP--IGAAAEPSVHRIALADLHDALRRGWDDFKAVPSHAVMLCVIYPV 58 Query: 61 LGLVLARTVHGYSVLPLLFPLAAGFALLGPFAAIGLYEMSRRREDGGEASAWDAMEVFRS 120 LGLVLAR V GYSVLPLLFPLAAGFAL+GPFAA+GLYE+SRRR+ G +ASAW A++V RS Sbjct: 59 LGLVLARLVLGYSVLPLLFPLAAGFALIGPFAALGLYELSRRRKAGEDASAWHAVDVLRS 118 Query: 121 PSFGAMLGVGTLLFALFVTWIATAQAIYTAVFGYETAANIPDFAARVLTTQQGWWLIVVG 180 PS GAMLG+G +LFA+F WIATAQ IY A FG+ AA IPDF RVLTT +GW LI +G Sbjct: 119 PSIGAMLGLGAILFAVFGVWIATAQGIYVATFGHAPAAAIPDFVTRVLTTPEGWSLIAIG 178 Query: 181 CSVGFLFALVALCISVIAFPMMLDRQATAGEAMVTSMRAVAQNPVPMAAWGLIVAVLLVL 240 C VGF+FA+ ALC+SV+AFPMMLDRQA G A+ S+R A+NP+ +AAWGLIVA LLVL Sbjct: 179 CGVGFMFAVAALCVSVVAFPMMLDRQAGVGAAVTASLRVAARNPLEIAAWGLIVAALLVL 238 Query: 241 GTIPFFLGLAVVIPLLGHATWHLYREVIVKDPNARPVIPEPRERKPAADFPANLFPWRR 299 G++P FLGLAVVIPLLGHATWHLYR+VI +P+ + P ++ AADFPA L W+R Sbjct: 239 GSLPAFLGLAVVIPLLGHATWHLYRKVIEPNPHPPQIPPPNPIKRSAADFPATLLQWKR 297