BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0069.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001992147.1| tRNA (uracil-5-)-methyltransferase Gid [Rhod... 566 e-159 ref|NP_948170.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodops... 566 e-159 ref|NP_771367.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrh... 563 e-158 ref|YP_577078.1| tRNA (uracil-5-)-methyltransferase Gid [Nitroba... 558 e-157 ref|YP_569902.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodops... 556 e-156 >ref|YP_001992147.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris TIE-1] gb|ACF01672.1| gid protein [Rhodopseudomonas palustris TIE-1] Length = 478 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/304 (88%), Positives = 287/304 (94%), Gaps = 1/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +GAGLAGSEAAWQ+A AGVR VLHEMRP R TEAH+TDG A VCSNSFRSDDAANNAVG Sbjct: 15 IGAGLAGSEAAWQIARAGVRVVLHEMRPIRTTEAHKTDGLAELVCSNSFRSDDAANNAVG 74 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMRRLGSLIM++ADANQVPAGGALAVDRDGFSAAVTKAL EHPLIEI REE+ GLP Sbjct: 75 LLHAEMRRLGSLIMQAADANQVPAGGALAVDRDGFSAAVTKALAEHPLIEICREEIDGLP 134 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P +W+NV++ATGPLTSAPLADAIR LTDESALAFFDAIAPIVH+DSIDMSVAWFQSRYDK Sbjct: 135 PQEWTNVVIATGPLTSAPLADAIRGLTDESALAFFDAIAPIVHRDSIDMSVAWFQSRYDK 194 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTGADY+NCPMT+EQYDAFV AL++GEKVDFKDWE +TPYFDGCLP+EVMAERG E Sbjct: 195 VGPGGTGADYLNCPMTREQYDAFVDALIEGEKVDFKDWEKDTPYFDGCLPIEVMAERGRE 254 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYN+VGFQTKLKHGAQ RVFRTIP Sbjct: 255 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNMVGFQTKLKHGAQLRVFRTIP 314 Query: 300 GLXD 303 GL + Sbjct: 315 GLEN 318 >ref|NP_948170.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris CGA009] sp|Q6N5Z1.1|TRMFO_RHOPA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase emb|CAE28269.1| putative glucose-inhibited division protein (gid) [Rhodopseudomonas palustris CGA009] Length = 478 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/304 (88%), Positives = 287/304 (94%), Gaps = 1/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +GAGLAGSEAAWQ+A AGVR VLHEMRP R TEAH+TDG A VCSNSFRSDDAANNAVG Sbjct: 15 IGAGLAGSEAAWQIARAGVRVVLHEMRPVRTTEAHKTDGLAELVCSNSFRSDDAANNAVG 74 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMRRLGSLIM++ADANQVPAGGALAVDRDGFSAAVTKAL EHPLIEI REE+ GLP Sbjct: 75 LLHAEMRRLGSLIMQAADANQVPAGGALAVDRDGFSAAVTKALAEHPLIEICREEIDGLP 134 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P +W+NV++ATGPLTSAPLADAIR LTDESALAFFDAIAPIVH+DSIDMSVAWFQSRYDK Sbjct: 135 PQEWTNVVIATGPLTSAPLADAIRGLTDESALAFFDAIAPIVHRDSIDMSVAWFQSRYDK 194 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTGADY+NCPMT+EQYDAFV AL++GEKVDFKDWE +TPYFDGCLP+EVMAERG E Sbjct: 195 VGPGGTGADYLNCPMTREQYDAFVDALIEGEKVDFKDWEKDTPYFDGCLPIEVMAERGRE 254 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYN+VGFQTKLKHGAQ RVFRTIP Sbjct: 255 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNMVGFQTKLKHGAQLRVFRTIP 314 Query: 300 GLXD 303 GL + Sbjct: 315 GLEN 318 >ref|NP_771367.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium japonicum USDA 110] sp|Q89L21.1|TRMFO_BRAJA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase dbj|BAC49992.1| glucose inhibited division protein [Bradyrhizobium japonicum USDA 110] Length = 475 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/302 (88%), Positives = 285/302 (94%), Gaps = 1/302 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +GAGLAGSEAAWQVA AGV +LHEMRP RMTEAHRTDG A VCSNSFRSDDAANNAVG Sbjct: 12 IGAGLAGSEAAWQVAKAGVPVMLHEMRPDRMTEAHRTDGLAELVCSNSFRSDDAANNAVG 71 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMRRLGSLIMR+ADANQVPAGGALAVDRDGFSAAVTKALN+HPLIEI+R E+AGLP Sbjct: 72 LLHAEMRRLGSLIMRAADANQVPAGGALAVDRDGFSAAVTKALNDHPLIEIARGEIAGLP 131 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 PADW NVIVATGPLTSAPLADAIR+LTDE+ALAFFDAIAPIVH++SIDMSVAWFQSRYDK Sbjct: 132 PADWGNVIVATGPLTSAPLADAIRELTDENALAFFDAIAPIVHRESIDMSVAWFQSRYDK 191 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGG GADYINCPMTKEQY+ FVAAL+ GEK +FK+WETNTPYFDGCLP+EVMAERG E Sbjct: 192 VGPGGNGADYINCPMTKEQYEGFVAALIAGEKTEFKEWETNTPYFDGCLPIEVMAERGPE 251 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKPVGLTNPH+PT K YAIVQLRQDNKLGTLYNIVGFQTKLK+G QQR+FRTIP Sbjct: 252 TLRHGPMKPVGLTNPHDPTTKAYAIVQLRQDNKLGTLYNIVGFQTKLKYGEQQRIFRTIP 311 Query: 300 GL 301 GL Sbjct: 312 GL 313 >ref|YP_577078.1| tRNA (uracil-5-)-methyltransferase Gid [Nitrobacter hamburgensis X14] sp|Q1QMC9.1|TRMFO_NITHX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase gb|ABE62618.1| gid protein [Nitrobacter hamburgensis X14] Length = 477 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 267/302 (88%), Positives = 282/302 (93%), Gaps = 1/302 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +GAGLAGSEAAWQVAN GVR VLHEMRPHRMT AH+T G A VCSNSFRSDDAANNAVG Sbjct: 14 IGAGLAGSEAAWQVANHGVRVVLHEMRPHRMTAAHQTGGLAELVCSNSFRSDDAANNAVG 73 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMRRLGSLIMR ADANQVPAGGALAVDRDGFS+AVTKAL++HPLIEI+R EV GLP Sbjct: 74 LLHAEMRRLGSLIMRCADANQVPAGGALAVDRDGFSSAVTKALDDHPLIEINRTEVDGLP 133 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 PADW NVIVATGPLTSAPLA AIR LTDESALAFFDAIAPIVH+DSIDMS AWFQSRYDK Sbjct: 134 PADWRNVIVATGPLTSAPLAAAIRALTDESALAFFDAIAPIVHRDSIDMSKAWFQSRYDK 193 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTGADYINCPMT+ QY AFV AL++GEKVDFKDWE +TPYFDGCLP+E+MAERG E Sbjct: 194 VGPGGTGADYINCPMTEAQYHAFVDALIEGEKVDFKDWEIDTPYFDGCLPIEIMAERGRE 253 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKPVGLTNPH+PTVKPYAIVQLRQDN+LGTLYNIVGFQTKLKHGAQ RVFRTIP Sbjct: 254 TLRHGPMKPVGLTNPHDPTVKPYAIVQLRQDNRLGTLYNIVGFQTKLKHGAQTRVFRTIP 313 Query: 300 GL 301 GL Sbjct: 314 GL 315 >ref|YP_569902.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris BisB5] sp|Q136I8.1|TRMFO_RHOPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO; AltName: Full=Folate-dependent tRNA (uracil-5-)-methyltransferase; AltName: Full=Folate-dependent tRNA(M-5-U54)-methyltransferase gb|ABE40001.1| gid protein [Rhodopseudomonas palustris BisB5] Length = 477 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/304 (85%), Positives = 283/304 (93%), Gaps = 1/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +GAGLAGSEAAWQVA AG+R VLHEMRP RMT+AH+TDG A VCSNSFRSDDAANNAVG Sbjct: 14 IGAGLAGSEAAWQVARAGIRVVLHEMRPDRMTQAHKTDGLAELVCSNSFRSDDAANNAVG 73 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMR+LGSL+MR+ADANQVPAGGALAVDRDGFSAAVTKAL EHPLIEI REE+ GLP Sbjct: 74 LLHAEMRKLGSLVMRAADANQVPAGGALAVDRDGFSAAVTKALAEHPLIEIRREEIGGLP 133 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P DW NVI+ATGPLTSAPLA+AIR LTDESALAFFDAIAPIVH+DSIDMSVAWFQSRYDK Sbjct: 134 PEDWGNVIIATGPLTSAPLAEAIRALTDESALAFFDAIAPIVHRDSIDMSVAWFQSRYDK 193 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 GPGG+GADY+NCPMT+EQYD FV AL++GEKVDFKDWE +TPYFDGCLP+EVMAERG E Sbjct: 194 AGPGGSGADYLNCPMTREQYDGFVDALIEGEKVDFKDWERDTPYFDGCLPIEVMAERGRE 253 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKPVGLTNPHNP VK YAIVQLRQDNKLGTL+N+VGFQTKL +GAQQRVFRTIP Sbjct: 254 TLRHGPMKPVGLTNPHNPLVKSYAIVQLRQDNKLGTLFNMVGFQTKLNYGAQQRVFRTIP 313 Query: 300 GLXD 303 GL + Sbjct: 314 GLEN 317