BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0068.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693500.1| LysR family transcriptional regulator [Stark... 333 2e-89 ref|ZP_05123973.1| transcriptional regulator, LysR family [Rhodo... 316 2e-84 ref|YP_004302449.1| transcriptional regulator [Polymorphum gilvu... 313 2e-83 ref|ZP_06053198.1| putative transcriptional regulatory protein L... 313 3e-83 ref|ZP_08733015.1| LysR family transcriptional regulator [Vibrio... 310 2e-82 >ref|YP_003693500.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH88881.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 318 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 161/299 (53%), Positives = 216/299 (72%) Query: 1 MSLTFRQVRHFIATAETGRVSAAAAALSVTQSAVTASIKALEAELGHKLFDRHSNGVTLT 60 MS++ +Q+R+F+A AETGR+S AA L+V+QSAVTA+I+ LEA +G +L DR GV +T Sbjct: 1 MSVSLKQIRYFVAAAETGRISQAAVELNVSQSAVTAAIQQLEALVGSRLLDRTPTGVAVT 60 Query: 61 FDGREFLQRARAIEASVSDAIRGPHRWGMQVDGTVDVAVSYTIAGYFLPPLLSRFWRSFP 120 +G FL + R I A+V++A+R H + GTV + V+YT+AGYFLP RF SFP Sbjct: 61 LEGSRFLSQGRQILAAVAEAVRDAHHSNAPIAGTVRIGVTYTVAGYFLPRHQMRFQASFP 120 Query: 121 GITVRLHEFSRDAIEQSLISGSVDAAIMLVANLHDRHSIRSRLLLRSPRRLWTCVNHPLL 180 G+TV L E R +EQ+L+ G++D A++LV+NL D ++ S LLLRS RRLW +HPL Sbjct: 121 GVTVELFEAPRSVVEQALVDGALDVAVLLVSNLQDSGNLASELLLRSARRLWLAPDHPLT 180 Query: 181 RKDSIKLADLASEPYLMLTVDEAERSAMRYWQHTAYVPNVIFRTLSVEAVRSMVATGMGI 240 R + + LAD+A PY+MLTVDEA ++MRYW A P VIFRT SVEAVRSMVA GMG+ Sbjct: 181 RPERVTLADVARHPYVMLTVDEARHTSMRYWSTYALKPRVIFRTSSVEAVRSMVAGGMGV 240 Query: 241 TILSDMVYRPWSLEGHRIDLKTLDDDVHTMDVGLAWKDKAKLSPAARAFCEFVAHSYPG 299 TILSD+VYRPWSLEG RI+ + L+D+V +MDVGLAW+ A+ +PA AF +F+ + G Sbjct: 241 TILSDLVYRPWSLEGQRIEQRELEDEVPSMDVGLAWRRDARFTPAMSAFRDFLRFAVAG 299 >ref|ZP_05123973.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] gb|EEE38605.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 147/294 (50%), Positives = 211/294 (71%), Gaps = 1/294 (0%) Query: 1 MSLTFRQVRHFIATAETGRVSAAAAALSVTQSAVTASIKALEAELGHKLFDRHSNGVTLT 60 M +F+Q+R+FIA A G++S A L+V+QS VT +IK+LE +G LF+RH+NGVTLT Sbjct: 1 MEPSFKQIRYFIAVANAGQISRGAMDLNVSQSVVTTAIKSLEEIVGTPLFERHANGVTLT 60 Query: 61 FDGREFLQRARAIEASVSDAIRGPHRWGMQVDGTVDVAVSYTIAGYFLPPLLSRFWRSFP 120 ++G +FL AR I SV +A+R P + + GT+++AV+YT+AGYFLP L+ F R+FP Sbjct: 61 YEGDQFLGHARHIVESVEEAVRIPRKARQNISGTINLAVTYTVAGYFLPKPLAGFQRAFP 120 Query: 121 GITVRLHEFSRDAIEQSLISGSVDAAIMLVANLHDRHSIRSRLLLRSPRRLWTCVNHPLL 180 G+T+ L E R IE+SL++ D A+ML +N+ + I +LLRSPRRLW +HP L Sbjct: 121 GVTLNLFEADRATIEESLVTKGCDLAVMLTSNIVNHEDISHTVLLRSPRRLWVGAHHPFL 180 Query: 181 RKDSIKLADLASEPYLMLTVDEAERSAMRYWQHTAYVPNVIFRTLSVEAVRSMVATGMGI 240 ++ ++ L +++ PY+MLTVDEA +A++YW ++ Y PN +FRT SVEAVRSMVA GMG+ Sbjct: 181 QQKTVGLKEISEAPYIMLTVDEASNTALKYWSNSQYQPNTVFRTSSVEAVRSMVANGMGV 240 Query: 241 TILSDMVYRPWSLEGHRIDLKTLDDDVHTMDVGLAWK-DKAKLSPAARAFCEFV 293 ++LSDMVYRPWSLEG R+++ + D + TMDVGLAW + + AA AF +F+ Sbjct: 241 SVLSDMVYRPWSLEGRRVEIVDVLDPIPTMDVGLAWPASTPERTDAANAFIDFM 294 >ref|YP_004302449.1| transcriptional regulator [Polymorphum gilvum SL003B-26A1] gb|ADZ69150.1| Probable transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 300 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 153/294 (52%), Positives = 207/294 (70%) Query: 1 MSLTFRQVRHFIATAETGRVSAAAAALSVTQSAVTASIKALEAELGHKLFDRHSNGVTLT 60 M+LT +QVR+FIA AETG++S AA ++++QSAVTA+I+ LE +LG +L +R GVT+T Sbjct: 1 MTLTLKQVRYFIAAAETGQISHAAMEMNISQSAVTAAIQGLETQLGVRLLERRPTGVTMT 60 Query: 61 FDGREFLQRARAIEASVSDAIRGPHRWGMQVDGTVDVAVSYTIAGYFLPPLLSRFWRSFP 120 +G FL ARAI A+V DA+R P G ++ G V + V+YT+AGYF+ +RF RS+P Sbjct: 61 AEGARFLNHARAIVAAVDDAVRSPLGEGARITGRVRLGVTYTVAGYFMARHYARFRRSYP 120 Query: 121 GITVRLHEFSRDAIEQSLISGSVDAAIMLVANLHDRHSIRSRLLLRSPRRLWTCVNHPLL 180 GIT+ + E R A+E++L+ G +D ++ML +NL + + L RS RRLW +HPLL Sbjct: 121 GITLDMIELPRSAVEEALVDGQLDLSVMLTSNLSNHRVLDHETLFRSRRRLWLPSDHPLL 180 Query: 181 RKDSIKLADLASEPYLMLTVDEAERSAMRYWQHTAYVPNVIFRTLSVEAVRSMVATGMGI 240 +I LAD+A EPY+MLTVDEA +A RYW+ P +F T SVEAVRSMVA GMG+ Sbjct: 181 SAPAITLADVAQEPYIMLTVDEASETAGRYWERAGLQPETVFVTSSVEAVRSMVAAGMGL 240 Query: 241 TILSDMVYRPWSLEGHRIDLKTLDDDVHTMDVGLAWKDKAKLSPAARAFCEFVA 294 TILSDMVYRPWSLEG RI+L+TL D + +MDVGLAW + + AA F F++ Sbjct: 241 TILSDMVYRPWSLEGQRIELRTLVDSIPSMDVGLAWARERPMQEAAAVFRAFIS 294 >ref|ZP_06053198.1| putative transcriptional regulatory protein LysR-family [Grimontia hollisae CIP 101886] gb|EEY71948.1| putative transcriptional regulatory protein LysR-family [Grimontia hollisae CIP 101886] Length = 307 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 148/290 (51%), Positives = 201/290 (69%) Query: 4 TFRQVRHFIATAETGRVSAAAAALSVTQSAVTASIKALEAELGHKLFDRHSNGVTLTFDG 63 T +Q+R+FIATA++G+VS AA A+ V+QSA+T ++K LE L LF R +G+ LT++G Sbjct: 4 TMKQIRYFIATADSGQVSQAANAMHVSQSAITTAVKQLEEMLNVSLFVRQPHGMLLTYEG 63 Query: 64 REFLQRARAIEASVSDAIRGPHRWGMQVDGTVDVAVSYTIAGYFLPPLLSRFWRSFPGIT 123 +F Q A I + +A+ HR QV GT+ +A+SYT+AGYF+PP L+RF RS+P + Sbjct: 64 NQFYQHATHIVKELEEAMLLSHRRANQVSGTITLAMSYTLAGYFVPPYLTRFQRSYPNVN 123 Query: 124 VRLHEFSRDAIEQSLISGSVDAAIMLVANLHDRHSIRSRLLLRSPRRLWTCVNHPLLRKD 183 V+L E +R IE+ ++SG D A ML +NL ++ I + LL S RRLW +HPLL + Sbjct: 124 VKLVEATRSNIEEGVVSGEFDVAFMLTSNLLNQEDISFQTLLSSQRRLWLSSSHPLLERK 183 Query: 184 SIKLADLASEPYLMLTVDEAERSAMRYWQHTAYVPNVIFRTLSVEAVRSMVATGMGITIL 243 + L D+A PY+MLTVDEA +A RYW T Y PN +FRT SVE+VRS+VA GITIL Sbjct: 184 MVTLHDVAQYPYIMLTVDEASNTAQRYWNQTPYQPNTVFRTTSVESVRSLVANDYGITIL 243 Query: 244 SDMVYRPWSLEGHRIDLKTLDDDVHTMDVGLAWKDKAKLSPAARAFCEFV 293 SDMVYRPWSLEG R++++ L D V MDVG+ W K + S A +AFCEF+ Sbjct: 244 SDMVYRPWSLEGRRVEVRPLADHVPAMDVGVVWSRKRERSSAVKAFCEFM 293 >ref|ZP_08733015.1| LysR family transcriptional regulator [Vibrio nigripulchritudo ATCC 27043] gb|EGU59363.1| LysR family transcriptional regulator [Vibrio nigripulchritudo ATCC 27043] Length = 307 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/296 (50%), Positives = 200/296 (67%) Query: 1 MSLTFRQVRHFIATAETGRVSAAAAALSVTQSAVTASIKALEAELGHKLFDRHSNGVTLT 60 M T +Q+R+FIATA++G+VS AA A+ V+QSA+T +IK+LE L LF R +G+ LT Sbjct: 1 MQPTMKQIRYFIATADSGQVSQAANAMHVSQSAITTAIKSLEEMLNVNLFVRQPHGMMLT 60 Query: 61 FDGREFLQRARAIEASVSDAIRGPHRWGMQVDGTVDVAVSYTIAGYFLPPLLSRFWRSFP 120 ++G +F Q A I + +A+ HR QV G + +A+SYT+AGYF+PP L+RF RS+P Sbjct: 61 YEGNQFYQHATHIVKEIEEAMLLSHRSSNQVQGVIRLAMSYTVAGYFVPPYLTRFQRSYP 120 Query: 121 GITVRLHEFSRDAIEQSLISGSVDAAIMLVANLHDRHSIRSRLLLRSPRRLWTCVNHPLL 180 + V+L E +R IE+ ++SG D A ML +NL ++ I + LL SPRRLW +HPLL Sbjct: 121 KVDVKLVEATRSEIEEGVVSGDYDLAFMLTSNLINQEDISFQTLLSSPRRLWVSSSHPLL 180 Query: 181 RKDSIKLADLASEPYLMLTVDEAERSAMRYWQHTAYVPNVIFRTLSVEAVRSMVATGMGI 240 D+A PY+MLTVDEA +A RYW T Y PN IFRT SVE+VRS+VA G+ Sbjct: 181 ENKLATFHDVAQYPYIMLTVDEASNTAQRYWNQTPYQPNTIFRTSSVESVRSLVANDYGV 240 Query: 241 TILSDMVYRPWSLEGHRIDLKTLDDDVHTMDVGLAWKDKAKLSPAARAFCEFVAHS 296 TILSDMVYRPWSLEG R++++ L D V M+VGL W K + S A AFCEF+ S Sbjct: 241 TILSDMVYRPWSLEGRRVEVRPLADHVPDMEVGLVWSRKRERSTAVAAFCEFMEMS 296