BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0064.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004302462.1| branched-chain amino acid ABC transporter pe... 375 e-102 ref|YP_004144558.1| inner-membrane translocator [Mesorhizobium c... 352 5e-95 ref|YP_683755.1| branched-chain amino acid ABC transporter, perm... 283 3e-74 ref|ZP_08527581.1| branched-chain amino acid ABC transporter, pe... 276 3e-72 ref|ZP_02154652.1| branched-chain amino acid ABC transporter, pe... 265 6e-69 >ref|YP_004302462.1| branched-chain amino acid ABC transporter permease [Polymorphum gilvum SL003B-26A1] gb|ADZ69163.1| branched-chain amino acid ABC transporter, permease protein, putative [Polymorphum gilvum SL003B-26A1] Length = 360 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/347 (58%), Positives = 262/347 (75%), Gaps = 3/347 (0%) Query: 1 MSQRPSVIRQTIITPIVLIVALLIMAALSYQFGSRAFNRTVVEMFINIMVVVGLYVFVGN 60 MS+R SV R+TI+TP++L + L+ +A L++ SR FN+TV+++F+ +++VVGLYVF+GN Sbjct: 1 MSRRASVARRTILTPVLLSLILVGLALLAFFVESRPFNQTVIDIFLRVILVVGLYVFIGN 60 Query: 61 SGLLSFGHISFMCLGAYMTAWLTIPPVMKSITLKGLPAWLLHAQLPMWVATPISGLFAAL 120 SG++SFGHI F CLGAY AWLTIPP+MK ++L GLP WL+ QLP W A ++ LFAA+ Sbjct: 61 SGVISFGHIGFTCLGAYAAAWLTIPPMMKRMSLPGLPDWLIQIQLPYWGAAVLAALFAAI 120 Query: 121 FALIVGRVIMRLSGIAASIATFGLLGVINNVYSNWDSVTGGQGSIVGIPPTMNVWTGWIG 180 FA + GRV+MRLSGIAASIATF +L +IN +YSNW SVTG S+VGIP + W I Sbjct: 121 FAFLFGRVLMRLSGIAASIATFAMLAMINTIYSNWASVTGATSSVVGIPIVRSPWPYLIA 180 Query: 181 GAVAIAIAYLYSISRSGLALRATRDEAVAASASGIDIVRERLIAFVVSAFIIGLAGALYA 240 I +A+L++ISR+GLALRA RDE AA+ASG+DI RERLIAF VS I+GL GAL+A Sbjct: 181 AIAMIFLAWLHAISRAGLALRAARDEPTAAAASGVDIPRERLIAFTVSGAIMGLGGALFA 240 Query: 241 HFLSIVNPGAFYLRTTFITLSMLVVGGMYSLSGAVSGVVAISVLIELFRNLEKGISLGGH 300 H + +V P FYL TFITLSMLVVGGM SLSGAV GVV +S+LI++ R LE+G+S+G Sbjct: 241 HSIGLVTPDTFYLGLTFITLSMLVVGGMGSLSGAVLGVVLLSILIQVLRWLEQGVSVGSS 300 Query: 301 TVGLPNGVQEIAIGIITIAILMYLPTGLTRNQEFSWRRWPLQRRLTP 347 T LPNG+QEIA+GI+ I ILM+ P G+ N+E S WP R TP Sbjct: 301 TFALPNGMQEIALGIVMIVILMFRPAGIMGNRELS---WPRARSATP 344 >ref|YP_004144558.1| inner-membrane translocator [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV14508.1| inner-membrane translocator [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 363 Score = 352 bits (903), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 198/335 (59%), Positives = 250/335 (74%) Query: 4 RPSVIRQTIITPIVLIVALLIMAALSYQFGSRAFNRTVVEMFINIMVVVGLYVFVGNSGL 63 R ++ R+TI+TP++L + LL +A ++ GSR FN+TV+++F+ +++VVGLY+F+GNSG+ Sbjct: 24 RFALARRTILTPVLLSLLLLAIALITVMTGSRPFNQTVIDVFVRVILVVGLYIFIGNSGV 83 Query: 64 LSFGHISFMCLGAYMTAWLTIPPVMKSITLKGLPAWLLHAQLPMWVATPISGLFAALFAL 123 LSFGHI F CLGAY AWLTI P+MK +L GLP WLL +LP W + ++ LFAAL AL Sbjct: 84 LSFGHIGFTCLGAYAAAWLTINPMMKRGSLPGLPEWLLATRLPYWQSATLAALFAALAAL 143 Query: 124 IVGRVIMRLSGIAASIATFGLLGVINNVYSNWDSVTGGQGSIVGIPPTMNVWTGWIGGAV 183 I GRV+MRLSGIAASIATF +L +IN +YSNW+SVTG S+VGIP +W IG V Sbjct: 144 IFGRVLMRLSGIAASIATFAMLAMINTIYSNWESVTGATSSVVGIPIVRVIWPYLIGAVV 203 Query: 184 AIAIAYLYSISRSGLALRATRDEAVAASASGIDIVRERLIAFVVSAFIIGLAGALYAHFL 243 AI IA+ ++ISRSGLALRA RDE AA+ASGIDI RERL+AFV+S ++GL GAL AH + Sbjct: 204 AIFIAWAHAISRSGLALRAARDEPTAAAASGIDIPRERLVAFVISGAVMGLGGALMAHSI 263 Query: 244 SIVNPGAFYLRTTFITLSMLVVGGMYSLSGAVSGVVAISVLIELFRNLEKGISLGGHTVG 303 +V P FYL TFITLSMLVVGGM SLSG V GVV +S LI+ R LE G+SLG T Sbjct: 264 GVVTPDTFYLGLTFITLSMLVVGGMGSLSGGVVGVVLLSALIQALRWLEAGVSLGESTFA 323 Query: 304 LPNGVQEIAIGIITIAILMYLPTGLTRNQEFSWRR 338 LP GVQEIA+G+I I IL P+GL N+E + R Sbjct: 324 LPKGVQEIALGVIMIVILALRPSGLMGNREITLPR 358 >ref|YP_683755.1| branched-chain amino acid ABC transporter, permease protein, putative [Roseobacter denitrificans OCh 114] gb|ABG33069.1| branched-chain amino acid ABC transporter, permease protein, putative [Roseobacter denitrificans OCh 114] Length = 342 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/326 (48%), Positives = 214/326 (65%), Gaps = 4/326 (1%) Query: 14 TPIVLIVALLIMAALSYQFGSRAFNRTVVEMFINIMVVVGLYVFVGNSGLLSFGHISFMC 73 TPI+LI L + L G + R + I + VVGL++FVGNSG++SFGH +M Sbjct: 15 TPILLIAILAVFTLLVTLLGDNSLARMAAQTLIRVTFVVGLWIFVGNSGIVSFGHAGYMA 74 Query: 74 LGAYMTAWLTIPPVMKSITLKGLPAWLLHAQLPMWVATPISGLFAALFALIVGRVIMRLS 133 +GAY +AWLT+ P MK + L L +L A+ ++ A +SGL AA AL+ G I+RLS Sbjct: 75 VGAYCSAWLTLRPQMKGMFLPDLWPFLATAEWSVFPAAVVSGLLAAFIALLSGAAILRLS 134 Query: 134 GIAASIATFGLLGVINNVYSNWDSVTGGQGSIVGIPPTMNVWT--GWIGGAVAIAIAYLY 191 GIAASIATF L ++ VYS+W+ VTG S+VG+ + W GW + I A Y Sbjct: 135 GIAASIATFAFLAIVYTVYSSWEGVTGATSSVVGLTRYADQWVTLGW--ASATILAAAWY 192 Query: 192 SISRSGLALRATRDEAVAASASGIDIVRERLIAFVVSAFIIGLAGALYAHFLSIVNPGAF 251 + S SGLALRA+R++ VAA ASGI++ R RLIA VVSAF G+AGAL+ H L ++NP +F Sbjct: 193 ANSASGLALRASREDEVAADASGINMYRHRLIALVVSAFFAGVAGALFGHSLGVLNPNSF 252 Query: 252 YLRTTFITLSMLVVGGMYSLSGAVSGVVAISVLIELFRNLEKGISLGGHTVGLPNGVQEI 311 YL TFITL+MLVVGG+ SL+GAV GV+ +S++IE +E+G+ +G T LP G QEI Sbjct: 253 YLGVTFITLAMLVVGGIGSLTGAVMGVLVLSIIIEALVRMERGMEIGEATFALPTGAQEI 312 Query: 312 AIGIITIAILMYLPTGLTRNQEFSWR 337 IG+I I +L+ PTGLT +E R Sbjct: 313 IIGVIMILVLILRPTGLTGGRELRLR 338 >ref|ZP_08527581.1| branched-chain amino acid ABC transporter, permease protein [Agrobacterium sp. ATCC 31749] gb|EGL65717.1| branched-chain amino acid ABC transporter, permease protein [Agrobacterium sp. ATCC 31749] Length = 356 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/336 (43%), Positives = 215/336 (63%), Gaps = 6/336 (1%) Query: 15 PIVLIVALLIMAALSYQFGSRAFNRTVVEMFINIMVVVGLYVFVGNSGLLSFGHISFMCL 74 P +L+ + ++ L+ F S + T+VEM I I+VVVG+Y+F+GNSG++SFGHI FMC+ Sbjct: 19 PAILVSCIALIVVLASFFDSSVISTTIVEMMIRIVVVVGIYIFIGNSGIVSFGHIGFMCI 78 Query: 75 GAYMTAWLTIPPVMKSITLKGLPAWLLHAQLPMWVATPISGLFAALFALIVGRVIMRLSG 134 GAY AW+ P+ K + L GLP + Q P V ++ + AL +G IMR+SG Sbjct: 79 GAYAAAWVGADPIFKDVMLSGLPDIVRLHQYPFMVGVALAVFLSTCVALGLGIAIMRISG 138 Query: 135 IAASIATFGLLGVINNVYSNWDSVTGGQGSIVGIPPTMNVWTGWIGGAVAIAIAYLYSIS 194 + +SIATF L ++N++YSNW+SVT G SI GIP + W + +AI IA+ + S Sbjct: 139 VGSSIATFAFLMIVNSLYSNWESVTAGVSSITGIPTVVEPWIALVFAGIAICIAFAFQTS 198 Query: 195 RSGLALRATRDEAVAASASGIDIVRERLIAFVVSAFIIGLAGALYAHFLSIVNPGAFYLR 254 R G+ L+ATRD+ VAA ASG+ +V RL+AFV+SA ++G G LYA+FL I+ FYL+ Sbjct: 199 RIGIMLKATRDDPVAAVASGVSLVGVRLLAFVLSAAVVGAGGGLYAYFLGILTVDPFYLQ 258 Query: 255 TTFITLSMLVVGGMYSLSGAVSGVVAISVLIELFRNLEKGISLGGHTVGLPNGVQEIAIG 314 F+T++MLVVGGM SL+GAVSGV+ ++++ E R LE+G + LP G QE+ +G Sbjct: 259 LCFLTIAMLVVGGMSSLTGAVSGVIFVTLVTESLRALERGDGF----IALPTGSQELGLG 314 Query: 315 IITIAILMYLPTGLTRNQEFSWRRWPLQRRLTPPVQ 350 ++ +L+ P GL+ +E ++ QR P Q Sbjct: 315 VLMAVMLVVRPLGLSNGKEILLFKF--QRNKPPRSQ 348 >ref|ZP_02154652.1| branched-chain amino acid ABC transporter, permease protein, putative [Oceanibulbus indolifex HEL-45] gb|EDQ03823.1| branched-chain amino acid ABC transporter, permease protein, putative [Oceanibulbus indolifex HEL-45] Length = 342 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 159/326 (48%), Positives = 215/326 (65%), Gaps = 4/326 (1%) Query: 14 TPIVLIVALLIMAALSYQFGSRAFNRTVVEMFINIMVVVGLYVFVGNSGLLSFGHISFMC 73 TPI+LI L++ L G ++ R + I + VVGL++FVGNSGL+SFGH +M Sbjct: 15 TPILLIAILVVFTLLVTLLGDKSLARMAAQTLIRVTFVVGLWIFVGNSGLVSFGHAGYMA 74 Query: 74 LGAYMTAWLTIPPVMKSITLKGLPAWLLHAQLPMWVATPISGLFAALFALIVGRVIMRLS 133 +GAY +AWLT+ P MK + L L +L A+ + A SGL AA+ ALI G I+RLS Sbjct: 75 IGAYCSAWLTLRPQMKGMFLPDLWPYLATAEWHGFPAAVASGLLAAVIALISGAAILRLS 134 Query: 134 GIAASIATFGLLGVINNVYSNWDSVTGGQGSIVGIPPTMNVWT--GWIGGAVAIAIAYLY 191 GIAASIATF L ++ VYS+W+ VTG S+VG+ + W GW +V + A Y Sbjct: 135 GIAASIATFAFLAIVYTVYSSWEGVTGATSSVVGLTRYADQWVTLGW--ASVTVLAAAWY 192 Query: 192 SISRSGLALRATRDEAVAASASGIDIVRERLIAFVVSAFIIGLAGALYAHFLSIVNPGAF 251 + S SGLALRA+R++ VAA ASGI++ RLI+ VVSAF G+AGAL+ H L ++NP +F Sbjct: 193 ANSASGLALRASREDEVAADASGINMYGHRLISLVVSAFFAGVAGALFGHSLGVLNPNSF 252 Query: 252 YLRTTFITLSMLVVGGMYSLSGAVSGVVAISVLIELFRNLEKGISLGGHTVGLPNGVQEI 311 YL TFITL+MLVVGG+ SL+GAV GV+ +S++IE +E+G+ +G T+ LP G QEI Sbjct: 253 YLGITFITLAMLVVGGIGSLTGAVMGVLVLSIIIEGLVRMERGMEIGETTLALPTGAQEI 312 Query: 312 AIGIITIAILMYLPTGLTRNQEFSWR 337 IGII I +L+ P GLT +E R Sbjct: 313 IIGIIMILVLILRPAGLTGGRELRLR 338