BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0063.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004302463.1| branched-chain amino acid ABC transporter pe... 621 e-176 ref|YP_004144559.1| extracellular ligand-binding receptor [Mesor... 611 e-173 ref|ZP_02155101.1| branched-chain amino acid ABC transporter, pe... 453 e-125 ref|YP_683756.1| branched-chain amino acid ABC transporter, peri... 451 e-124 ref|ZP_03507002.1| branched-chain amino acid ABC transporter, pe... 320 2e-85 >ref|YP_004302463.1| branched-chain amino acid ABC transporter periplasmic binding protein [Polymorphum gilvum SL003B-26A1] gb|ADZ69164.1| Branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Polymorphum gilvum SL003B-26A1] Length = 395 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 294/394 (74%), Positives = 345/394 (87%), Gaps = 2/394 (0%) Query: 1 MRFTTLLSILAGASALWFTPARAANE-IVVGFATAASGFMQAYDKPAQDAALIRIEEINK 59 M T ++ ++AL PA A ++ I++GFATA SGFMQAYDKPAQDAA+IRI EIN Sbjct: 1 MTLMTRWAVALASTALCALPALADDDRIIIGFATAESGFMQAYDKPAQDAAMIRISEINA 60 Query: 60 AGGLLGKKIKPVFADSKTDQAEGAKAGLAVLDQGADLVIVSCDYDFGAPAALQAQAAGKV 119 AGGLLGK+I+ V AD+KTD+AEGAKAGL+V+D GADLV+VSCDYDFGAPAAL A+++G+V Sbjct: 61 AGGLLGKQIEVVNADTKTDRAEGAKAGLSVVDAGADLVVVSCDYDFGAPAALAAESSGRV 120 Query: 120 SFFLCAEX-KAGIPGVGPFSFSASVLAPVQGATMSEWAYTKKNARSFYRLLDSWTVYNKG 178 SFFLCAE KAGI GVGP SFSASVLA VQGATM+EWAYTKK AR+FYRLLD+WT YNKG Sbjct: 121 SFFLCAESIKAGIQGVGPHSFSASVLAAVQGATMAEWAYTKKEARTFYRLLDTWTEYNKG 180 Query: 179 ICDGFDWMLPRLKEAKLVGSDTFKNDDASIASQITRIKSLPKEPDAIMLCTMMPGAVSAI 238 ICDGFDWMLP+L +AKLVG DTFKN+DASIA+QITRIKSLP+EPDAIMLCTMMPGAVSAI Sbjct: 181 ICDGFDWMLPKLADAKLVGEDTFKNEDASIAAQITRIKSLPEEPDAIMLCTMMPGAVSAI 240 Query: 239 KQIRAAGIKSMILNGSGVDGSYWMNAVPDLSNFYVPVQGSVYGDDPNPKVNEFNKKYKEI 298 KQ+RAAGI SMILNGSGVDGSYW++AVPDLSNF+VPVQGS+YGDDPNP+V FN K++ + Sbjct: 241 KQLRAAGINSMILNGSGVDGSYWLSAVPDLSNFFVPVQGSIYGDDPNPQVTAFNAKFQAV 300 Query: 299 TGGDPSSQYVYPGYVLIDVWAKAVERAKSTDAAAVVAELEKMNSEPTLFGPRTFTKDIHH 358 TG +PS+QY YPGYV++DVWAKAVERA +T+A AVVAELEKM EPTLFGPRTFT ++HH Sbjct: 301 TGAEPSTQYTYPGYVMVDVWAKAVERAGTTEAGAVVAELEKMRDEPTLFGPRTFTSELHH 360 Query: 359 QNQGRYLIVDTEAGKPQVIDQWTISEKIPLDYLV 392 QN+ RYLIV+T GKP V+D+WTISE IP+ L+ Sbjct: 361 QNRARYLIVETSNGKPGVVDEWTISEAIPVADLM 394 >ref|YP_004144559.1| extracellular ligand-binding receptor [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV14509.1| Extracellular ligand-binding receptor [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 397 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 292/377 (77%), Positives = 339/377 (89%), Gaps = 4/377 (1%) Query: 20 PARAANE-IVVGFATAASGFMQAYDKPAQDAALIRIEEINKAGGLLGKKIKPVFADSKTD 78 PA A ++ IV+GFATA SGFM+AYDKPAQ+AALIRI+EIN AGGLLGK+IK V AD+K+D Sbjct: 20 PALADDKTIVIGFATAESGFMEAYDKPAQEAALIRIDEINAAGGLLGKQIKVVKADTKSD 79 Query: 79 QAEGAKAGLAVLDQGADLVIVSCDYDFGAPAALQAQAAGKVSFFLCAEX-KAGIPGVGPF 137 +AEGAKAGL+VLDQGADLV+VSCDYDFG+PAAL A+ AG++SFFLCAE KAGI GVGP Sbjct: 80 RAEGAKAGLSVLDQGADLVVVSCDYDFGSPAALAAEDAGRISFFLCAESVKAGIQGVGPH 139 Query: 138 SFSASVLAPVQGATMSEWAYTKKNARSFYRLLDSWTVYNKGICDGFDWMLPRLKE--AKL 195 SFSASVLAPVQGATM+EWA+ +K A+ FYRLLD+WT YNKGICDGFDWM+P+L+ AKL Sbjct: 140 SFSASVLAPVQGATMAEWAFKEKGAKDFYRLLDTWTAYNKGICDGFDWMMPKLEAQGAKL 199 Query: 196 VGSDTFKNDDASIASQITRIKSLPKEPDAIMLCTMMPGAVSAIKQIRAAGIKSMILNGSG 255 VG DTFKN+DASIA+QITRIKSLPKEPDAIMLCTMMPGAVSAIKQ+RAAGI SMILNGSG Sbjct: 200 VGEDTFKNEDASIAAQITRIKSLPKEPDAIMLCTMMPGAVSAIKQLRAAGINSMILNGSG 259 Query: 256 VDGSYWMNAVPDLSNFYVPVQGSVYGDDPNPKVNEFNKKYKEITGGDPSSQYVYPGYVLI 315 VDGSYW++AVPDL+NFYVPVQGS+YGDDPNP+V +FN YK TG DPSSQYV+PGYV++ Sbjct: 260 VDGSYWLSAVPDLTNFYVPVQGSIYGDDPNPEVLKFNATYKAKTGADPSSQYVFPGYVMV 319 Query: 316 DVWAKAVERAKSTDAAAVVAELEKMNSEPTLFGPRTFTKDIHHQNQGRYLIVDTEAGKPQ 375 DVWAKAVERA +TDA AVVAELEKM +EPTLFGPRTFT ++HHQNQ RYLIV+T+AGKP Sbjct: 320 DVWAKAVERAGTTDADAVVAELEKMKNEPTLFGPRTFTPELHHQNQTRYLIVETKAGKPG 379 Query: 376 VIDQWTISEKIPLDYLV 392 V+ WTISE +P++ L+ Sbjct: 380 VVGNWTISEPVPMEALL 396 >ref|ZP_02155101.1| branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Oceanibulbus indolifex HEL-45] gb|EDQ03374.1| branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 389 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 241/389 (61%), Positives = 297/389 (76%), Gaps = 9/389 (2%) Query: 5 TLLSILAGASALWFTPARAANEIVVGFATAASGFMQAYDKPAQDAALIRIEEINKAGGLL 64 T L++ GA A+ A++I +GFA A SG+++AYD PA AA IRI+EIN AGGLL Sbjct: 8 TALTLALGAPAM-------ADDITIGFAIAKSGWLEAYDAPAVAAARIRIDEINAAGGLL 60 Query: 65 GKKIKPVFADSKTDQAEGAKAGLAVLDQGADLVIVSCDYDFGAPAALQAQAAGKVSFFLC 124 GK+IK + AD+K+DQA+ A AGL ++D+GA+++IV+CDYDFGAPAAL A+AAG SFFLC Sbjct: 61 GKQIKWIEADTKSDQAQSASAGLQLVDEGAEMLIVTCDYDFGAPAALAAEAAGLNSFFLC 120 Query: 125 AE-XKAGIPGVGPFSFSASVLAPVQGATMSEWAYTKKNARSFYRLLDSWTVYNKGICDGF 183 AE KAGI GVGP SFSASVLA VQGATM+EW+ +++A++ Y LLD+ YNKGIC GF Sbjct: 121 AEDIKAGIQGVGPNSFSASVLAAVQGATMAEWSVKERSAKTGYVLLDTTIEYNKGICTGF 180 Query: 184 DWMLPRLKEAKLVGSDTFKNDDASIASQITRIKSLPKEPDAIMLCTMMPGAVSAIKQIRA 243 DWM P+ ++VG DTF N DASIASQITRIK L EPD IMLC+ +PGA SA++QIRA Sbjct: 181 DWMFPKAG-GEIVGRDTFLNGDASIASQITRIKGLESEPDVIMLCSYIPGAASAVRQIRA 239 Query: 244 AGIKSMILNGSGVDGSYWMNAVPDLSNFYVPVQGSVYGDDPNPKVNEFNKKYKEITGGDP 303 AGI S ILNGS VDGSYW++A PDLSNF VPVQGS+YGDD P VNE ++ TG P Sbjct: 240 AGINSTILNGSAVDGSYWLDAAPDLSNFIVPVQGSIYGDDTRPAVNELRDAFEAATGAGP 299 Query: 304 SSQYVYPGYVLIDVWAKAVERAKSTDAAAVVAELEKMNSEPTLFGPRTFTKDIHHQNQGR 363 SS Y YPGY+LID+WAKA ERA + +A+AV AELEKM+ EPT+FGPR+F+ IHHQN Sbjct: 300 SSTYAYPGYLLIDLWAKAGERAGTVEASAVTAELEKMDGEPTVFGPRSFSDQIHHQNSAE 359 Query: 364 YLIVDTEAGKPQVIDQWTISEKIPLDYLV 392 IV+ GKP VI +TISE +PLD L+ Sbjct: 360 MQIVEITDGKPGVIGSFTISEPVPLDVLL 388 >ref|YP_683756.1| branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Roseobacter denitrificans OCh 114] gb|ABG33070.1| branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Roseobacter denitrificans OCh 114] Length = 389 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 240/389 (61%), Positives = 299/389 (76%), Gaps = 9/389 (2%) Query: 5 TLLSILAGASALWFTPARAANEIVVGFATAASGFMQAYDKPAQDAALIRIEEINKAGGLL 64 T L++ G +A+ A+EI +GFA A SG+++AYD PA AA IRI+EIN AGGLL Sbjct: 8 TTLALSLGTTAI-------ADEITIGFAIAKSGWVEAYDAPAVAAARIRIDEINAAGGLL 60 Query: 65 GKKIKPVFADSKTDQAEGAKAGLAVLDQGADLVIVSCDYDFGAPAALQAQAAGKVSFFLC 124 GK+I+ + AD+K+DQA+ A AGL ++D+GAD++IVSCDYDFGAPAAL A+ AG SFFLC Sbjct: 61 GKQIRWIEADTKSDQAQSASAGLQMVDEGADMLIVSCDYDFGAPAALAAEGAGLNSFFLC 120 Query: 125 AE-XKAGIPGVGPFSFSASVLAPVQGATMSEWAYTKKNARSFYRLLDSWTVYNKGICDGF 183 AE KAGI GVGP SFSASVLA VQGAT++EW+ +++A++ Y LLD+ YNKGIC GF Sbjct: 121 AEDIKAGIQGVGPNSFSASVLAAVQGATVAEWSVQERDAKTGYVLLDTTIEYNKGICTGF 180 Query: 184 DWMLPRLKEAKLVGSDTFKNDDASIASQITRIKSLPKEPDAIMLCTMMPGAVSAIKQIRA 243 DWM P+ ++VG+DTF N DASIASQITRIKSL +EPD IMLC+ +PGA SA++QIRA Sbjct: 181 DWMFPKAG-GEIVGTDTFLNGDASIASQITRIKSLAEEPDVIMLCSYIPGAASAVRQIRA 239 Query: 244 AGIKSMILNGSGVDGSYWMNAVPDLSNFYVPVQGSVYGDDPNPKVNEFNKKYKEITGGDP 303 AGI S ILNGS VDGSYW++A PDLSNF VPVQGS+YGDD P VN ++ TG P Sbjct: 240 AGINSTILNGSAVDGSYWLDAAPDLSNFIVPVQGSIYGDDTRPAVNALRDAFEAATGAGP 299 Query: 304 SSQYVYPGYVLIDVWAKAVERAKSTDAAAVVAELEKMNSEPTLFGPRTFTKDIHHQNQGR 363 SS Y YPGY+LID+WAKAVERA + +A+AV AELEKM++EPT FGPR+F+ +HHQN Sbjct: 300 SSTYAYPGYLLIDLWAKAVERAGTVEASAVTAELEKMDNEPTAFGPRSFSDQLHHQNTAE 359 Query: 364 YLIVDTEAGKPQVIDQWTISEKIPLDYLV 392 IV+ GKP VI +TISE +PLD L+ Sbjct: 360 MQIVEITNGKPGVIGSFTISEPVPLDVLL 388 >ref|ZP_03507002.1| branched-chain amino acid ABC transporter, periplasmic binding protein, putative [Rhizobium etli Brasil 5] Length = 298 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 162/298 (54%), Positives = 210/298 (70%), Gaps = 1/298 (0%) Query: 27 IVVGFATAASGFMQAYDKPAQDAALIRIEEINKAGGLLGKKIKPVFADSKTDQAEGAKAG 86 +VVGFATA SGFM YD A + A + I++ N AGGLLG++I AD+K+D+ EGA+AG Sbjct: 1 MVVGFATAQSGFMAGYDGDAANMAKLWIDDRNAAGGLLGQQIIVTSADTKSDRIEGARAG 60 Query: 87 LAVLDQGADLVIVSCDYDFGAPAALQAQAAGKVSFFLCAEX-KAGIPGVGPFSFSASVLA 145 V+D GAD+VIV+CDYDFGAPAA AQ A KVS FLCAE KAG+ G G F+F++S A Sbjct: 61 QTVVDAGADIVIVTCDYDFGAPAAGVAQRANKVSVFLCAEDPKAGVQGAGAFAFTSSTAA 120 Query: 146 PVQGATMSEWAYTKKNARSFYRLLDSWTVYNKGICDGFDWMLPRLKEAKLVGSDTFKNDD 205 VQGA ++ WA + Y LLD+ + YNK +C GF W L +L ++VG DTF NDD Sbjct: 121 HVQGAGIAGWAAKNLGMKRPYILLDTASEYNKSLCSGFRWALSQLDGVEIVGEDTFVNDD 180 Query: 206 ASIASQITRIKSLPKEPDAIMLCTMMPGAVSAIKQIRAAGIKSMILNGSGVDGSYWMNAV 265 ASI SQITRI L ++PDAI+LC+ +PG SA++QIRAAGI + IL GS +DG+YW ++V Sbjct: 181 ASIQSQITRINGLAEQPDAIVLCSYIPGGASALRQIRAAGIATPILAGSSMDGTYWTDSV 240 Query: 266 PDLSNFYVPVQGSVYGDDPNPKVNEFNKKYKEITGGDPSSQYVYPGYVLIDVWAKAVE 323 P LS+ ++PVQ SV GDDP P+VN +Y+E P + Y P Y +D+WAKAVE Sbjct: 241 PGLSDLFLPVQASVRGDDPRPEVNTMIARYEEKYKAKPFTVYALPIYAFLDLWAKAVE 298