BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0062.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004302450.1| LamB/YcsF family protein [Polymorphum gilvum... 367 1e-99 ref|YP_003693499.1| LamB/YcsF family protein [Starkeya novella D... 337 8e-91 ref|ZP_01076896.1| hypothetical protein MED121_10355 [Marinomona... 316 2e-84 ref|YP_004144550.1| LamB/YcsF family protein [Mesorhizobium cice... 316 2e-84 ref|ZP_07278390.1| conserved hypothetical protein [Streptomyces ... 303 1e-80 >ref|YP_004302450.1| LamB/YcsF family protein [Polymorphum gilvum SL003B-26A1] gb|ADZ69151.1| LamB/YcsF family protein [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 196/237 (82%) Query: 2 VVINCDMGEAYGLYKMGDDKALMPHIDVANVACGFHASDFNHMRKTVQLAKQFGVKVGAH 61 V INCDMGE++GLY++GDD +MP I +ANVACGFHASDFNHMR+TV+LAK GVKVGAH Sbjct: 3 VTINCDMGESFGLYRIGDDAGIMPFIHIANVACGFHASDFNHMRETVRLAKSHGVKVGAH 62 Query: 62 PSLPDLQGFGRREMKIDREELANCLLYQIGALKAFLDAEGMALNHIKPHGALYGMASRSE 121 PSLPDLQGFGRREMKI REE+ANCL+YQIGAL FL AEGM LNHIKPHG+LYGMA+R E Sbjct: 63 PSLPDLQGFGRREMKIGREEMANCLIYQIGALLGFLKAEGMELNHIKPHGSLYGMAARQE 122 Query: 122 EIAEAVADAADVYKVPLLGMKGTLHQKVYERRGHAFVAEYYADLDYNADGSLIITREHEA 181 EIA AV DAADV++VP+LGM GTLH+ +Y RGH FVAE+YADLDY DGSLI+TREHEA Sbjct: 123 EIAHAVCDAADVFQVPILGMTGTLHETIYPARGHRFVAEFYADLDYRPDGSLIVTREHEA 182 Query: 182 KDPADAATRCARAVNEGKTRTVAGNDIVVGSDSICIHSDTPNAVAIAEAVREAVRPY 238 KDPA A RC RA+ EGK G+DI V ++ICIHSDTPNA IA AV AV P+ Sbjct: 183 KDPALMAARCVRAITEGKGTATDGSDIPVRCETICIHSDTPNAPDIARAVSAAVAPF 239 >ref|YP_003693499.1| LamB/YcsF family protein [Starkeya novella DSM 506] gb|ADH88880.1| LamB/YcsF family protein [Starkeya novella DSM 506] Length = 241 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 158/238 (66%), Positives = 188/238 (78%) Query: 2 VVINCDMGEAYGLYKMGDDKALMPHIDVANVACGFHASDFNHMRKTVQLAKQFGVKVGAH 61 VVINCDMGE YGLY GDD +MPHI + NVACGFHA+D M KTV+LA + GV VGAH Sbjct: 3 VVINCDMGEGYGLYSCGDDAGIMPHIQIGNVACGFHAADPVVMSKTVRLAAEHGVAVGAH 62 Query: 62 PSLPDLQGFGRREMKIDREELANCLLYQIGALKAFLDAEGMALNHIKPHGALYGMASRSE 121 PS PDLQGFGRR+M + REEL+ C+LYQIGALK FLDA GM LNH+KPHGALYG A R E Sbjct: 63 PSFPDLQGFGRRDMAMGREELSACVLYQIGALKGFLDAAGMKLNHVKPHGALYGAAMRRE 122 Query: 122 EIAEAVADAADVYKVPLLGMKGTLHQKVYERRGHAFVAEYYADLDYNADGSLIITREHEA 181 E+A AVADAA VY VP++GM GTLH+KVY RG F++EYY DLDY+A G+LIITREHEA Sbjct: 123 EVAHAVADAAQVYGVPVVGMAGTLHEKVYRARGLTFISEYYVDLDYDASGALIITREHEA 182 Query: 182 KDPADAATRCARAVNEGKTRTVAGNDIVVGSDSICIHSDTPNAVAIAEAVREAVRPYL 239 +DPA+AA R R + EGK T+ G D + +++ICIHSDTPNA +A ++EAVRP+L Sbjct: 183 RDPAEAARRAVRMLTEGKAVTIDGRDFDMKAETICIHSDTPNAAELARVLKEAVRPWL 240 >ref|ZP_01076896.1| hypothetical protein MED121_10355 [Marinomonas sp. MED121] gb|EAQ65115.1| hypothetical protein MED121_10355 [Marinomonas sp. MED121] Length = 246 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 145/236 (61%), Positives = 181/236 (76%) Query: 4 INCDMGEAYGLYKMGDDKALMPHIDVANVACGFHASDFNHMRKTVQLAKQFGVKVGAHPS 63 INCDMGE++GLYK GDD+A+MP+I ANVACGFH SD NHM+ T+ LAK VKVGAH S Sbjct: 7 INCDMGESFGLYKFGDDEAIMPYISEANVACGFHGSDPNHMQNTINLAKAHKVKVGAHFS 66 Query: 64 LPDLQGFGRREMKIDREELANCLLYQIGALKAFLDAEGMALNHIKPHGALYGMASRSEEI 123 LPDLQGFGRREMKIDR E+ N ++YQIGALK FLDA G+ LNH+KPHGALYGMA++ EE Sbjct: 67 LPDLQGFGRREMKIDRVEMRNLIIYQIGALKGFLDAAGVPLNHLKPHGALYGMAAKFEET 126 Query: 124 AEAVADAADVYKVPLLGMKGTLHQKVYERRGHAFVAEYYADLDYNADGSLIITREHEAKD 183 A A+ADAA V+ VP+ G+ TLH+ V+ RG F+ E++ADLDY+ G LIITREH+A Sbjct: 127 AHAIADAASVFNVPVFGLSNTLHESVFNARGIEFIPEFFADLDYDNQGGLIITREHDAVS 186 Query: 184 PADAATRCARAVNEGKTRTVAGNDIVVGSDSICIHSDTPNAVAIAEAVREAVRPYL 239 P AA +C RAV +G +V G ++ V + +ICIHSDTPNA+A+A AV + P + Sbjct: 187 PEQAAEKCFRAVTQGLVTSVDGKEVAVSAKTICIHSDTPNALAVASAVNAKLAPLM 242 >ref|YP_004144550.1| LamB/YcsF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV14500.1| LamB/YcsF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 145/237 (61%), Positives = 184/237 (77%) Query: 2 VVINCDMGEAYGLYKMGDDKALMPHIDVANVACGFHASDFNHMRKTVQLAKQFGVKVGAH 61 V +NCDMGE++GLYK+GDD +MP IDVANVACGFHASD +HM V+ AK GVK+GAH Sbjct: 3 VTLNCDMGESFGLYKVGDDMGMMPIIDVANVACGFHASDPDHMHAAVRSAKASGVKIGAH 62 Query: 62 PSLPDLQGFGRREMKIDREELANCLLYQIGALKAFLDAEGMALNHIKPHGALYGMASRSE 121 P LPD+QGFGRREM++ REE+ N ++YQ+GAL FL AEG+ L+HIKPHG+LY MA + E Sbjct: 63 PGLPDIQGFGRREMRMTREEVRNTIIYQVGALAGFLKAEGVELHHIKPHGSLYFMAMQQE 122 Query: 122 EIAEAVADAADVYKVPLLGMKGTLHQKVYERRGHAFVAEYYADLDYNADGSLIITREHEA 181 IA V DAA+++ VPL GM GTLH+K+Y+ RG FVAE+YADLDY+A G LI+TR H+A Sbjct: 123 AIAHGVCDAAEIFGVPLFGMTGTLHEKIYQERGIPFVAEFYADLDYDASGKLILTRVHDA 182 Query: 182 KDPADAATRCARAVNEGKTRTVAGNDIVVGSDSICIHSDTPNAVAIAEAVREAVRPY 238 KDPA+ A RC RA+ EG+ G+ V ++IC+HSDTPNA+ IA AVR A+ P+ Sbjct: 183 KDPAEMAERCVRAIREGEGTAEDGSFFPVRCETICVHSDTPNAIEIARAVRTAIAPW 239 >ref|ZP_07278390.1| conserved hypothetical protein [Streptomyces sp. AA4] gb|EFL06759.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 240 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 150/240 (62%), Positives = 184/240 (76%) Query: 1 MVVINCDMGEAYGLYKMGDDKALMPHIDVANVACGFHASDFNHMRKTVQLAKQFGVKVGA 60 MV INCDMGEAY +Y+ GDD+ +MP+I VANVACGFHA+D MR+TV LA + VKVGA Sbjct: 1 MVAINCDMGEAYSIYRCGDDEGIMPYITVANVACGFHAADPVVMRRTVALAHEHSVKVGA 60 Query: 61 HPSLPDLQGFGRREMKIDREELANCLLYQIGALKAFLDAEGMALNHIKPHGALYGMASRS 120 HPS PD GFGRRE+K++ EEL ++YQ+GAL FL GM LNHIKPHGALYG+ASR Sbjct: 61 HPSFPDRDGFGRRELKMEPEELTAAVVYQVGALTGFLAEHGMPLNHIKPHGALYGLASRD 120 Query: 121 EEIAEAVADAADVYKVPLLGMKGTLHQKVYERRGHAFVAEYYADLDYNADGSLIITREHE 180 E +A A+A+AADV+ VPL+GM T+H+KV+ +R F+AEYY DLDY ADGSLIITREH Sbjct: 121 EAVARAIAEAADVFDVPLMGMANTVHEKVWGKRSQGFIAEYYTDLDYRADGSLIITREHV 180 Query: 181 AKDPADAATRCARAVNEGKTRTVAGNDIVVGSDSICIHSDTPNAVAIAEAVREAVRPYLT 240 A DPA AA R RAV EG +V G DI + +D IC+HSDTP AV +A++V +A+ PYLT Sbjct: 181 AYDPAIAAERSVRAVTEGLATSVDGQDIPMRADCICVHSDTPGAVDLAKSVHDALTPYLT 240