BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0057.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002547630.1| hypothetical protein Avi_5870 [Agrobacterium... 470 e-130 ref|YP_764665.1| putative urea amidolyase related protein [Rhizo... 466 e-129 ref|YP_002540579.1| hypothetical protein Arad_7500 [Agrobacteriu... 461 e-128 ref|ZP_05742302.1| urea carboxylase [Silicibacter sp. TrichCH4B]... 461 e-128 ref|YP_003693504.1| urea amidolyase-like protein [Starkeya novel... 459 e-127 >ref|YP_002547630.1| hypothetical protein Avi_5870 [Agrobacterium vitis S4] gb|ACM38914.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 325 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/325 (70%), Positives = 268/325 (82%), Gaps = 2/325 (0%) Query: 1 MAVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMG 60 M ++VL GLATTVQDLGRPGY+H+GIP G MDR AL AANLLVGND GAA LEAVF+G Sbjct: 1 MVIKVLHQGLATTVQDLGRPGYFHLGIPQGGAMDRLALKAANLLVGNDEGAAGLEAVFIG 60 Query: 61 PELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGI 120 P+LEF D VAVTGAE+P +LDGE + WT+FKV+ GQ+LSFDFLK GAR YIAVAGGI Sbjct: 61 PKLEFAADTMVAVTGAEMPIRLDGEEQPGWTAFKVRAGQVLSFDFLKAGARIYIAVAGGI 120 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 DVP+ LGSRSTYA+GALGGF+GR + AGD+LPVG A V +GR + LR P G P E Sbjct: 121 DVPLALGSRSTYAIGALGGFQGRAIAAGDQLPVGQAK-PVSEGRIIPQALRRRP-GAPAE 178 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 LR +PGLYW R+TE A FF D WKVAPEADR+GYRF+GG+ L+FVPR PPFGAGSDPS Sbjct: 179 LRVLPGLYWDRLTEEAKGNFFEDEWKVAPEADRMGYRFRGGRKLDFVPRTPPFGAGSDPS 238 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 NI D+CYPYGSIQVPGG+EPIVLHRDAVSGGGYFMVGTVI+ADMDLIGQLQP+TP +FVK Sbjct: 239 NIVDSCYPYGSIQVPGGSEPIVLHRDAVSGGGYFMVGTVISADMDLIGQLQPHTPTRFVK 298 Query: 301 VDMNQALAARKSRTELLGKLRSAMA 325 VDM QALAAR+ R ++ + ++++ Sbjct: 299 VDMEQALAARRERQAMIRDISASLS 323 >ref|YP_764665.1| putative urea amidolyase related protein [Rhizobium leguminosarum bv. viciae 3841] emb|CAK11864.1| putative urea amidolyase related protein [Rhizobium leguminosarum bv. viciae 3841] Length = 323 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 273/325 (84%), Gaps = 2/325 (0%) Query: 1 MAVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMG 60 MA++VL PGL+T+VQDLGRPGY+H+GIP+ G MDR+A+ AANLLVGND GAA LEAVFMG Sbjct: 1 MAIKVLHPGLSTSVQDLGRPGYFHLGIPIGGAMDRYAMRAANLLVGNDEGAAGLEAVFMG 60 Query: 61 PELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGI 120 P+LEF EDA VAVTGA++P K+DG + WT+FKVK GQ+LSFDFLK GAR IAVAGGI Sbjct: 61 PKLEFAEDALVAVTGADMPAKVDGVGQPGWTAFKVKAGQVLSFDFLKSGARILIAVAGGI 120 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 DVP LGSRSTY +GALGG+KGR L AGD LPVG A + ++G++VA +LR P G P E Sbjct: 121 DVPEALGSRSTYPIGALGGYKGRALAAGDALPVGKAGLA-EEGKSVAEELRRRP-GTPAE 178 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 LR +PGLYW R+T+AA FF+D WKVAPEADR+GYRF+GG+ L+F+ R+ PFGAGSDPS Sbjct: 179 LRVLPGLYWDRLTDAAKASFFADEWKVAPEADRMGYRFRGGRKLDFLDRKQPFGAGSDPS 238 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 NI D+CYPYGSIQVPGGTEPI+LHRDAVSGGGYFMVGTVI+ADMDLIGQLQP+TP +FV+ Sbjct: 239 NIVDSCYPYGSIQVPGGTEPIILHRDAVSGGGYFMVGTVISADMDLIGQLQPHTPARFVE 298 Query: 301 VDMNQALAARKSRTELLGKLRSAMA 325 V M++AL AR R LL +LR +++ Sbjct: 299 VTMDEALKARADRAALLDRLRQSLS 323 >ref|YP_002540579.1| hypothetical protein Arad_7500 [Agrobacterium radiobacter K84] gb|ACM28984.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 323 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/324 (68%), Positives = 267/324 (82%), Gaps = 2/324 (0%) Query: 1 MAVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMG 60 MA++VL GLATTVQDLGRPGY+H+GIP+ G MDR+A+ AAN LVGND GAA LEAVFMG Sbjct: 1 MAIKVLHHGLATTVQDLGRPGYFHLGIPVGGAMDRYAMRAANRLVGNDEGAAGLEAVFMG 60 Query: 61 PELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGI 120 P+LEF DA +AVTGA++P K+DG + WT+ K++ GQ+LSFDFLK GAR YIAV+GGI Sbjct: 61 PQLEFLHDAVIAVTGADMPAKIDGVLQPGWTALKIRAGQVLSFDFLKSGARIYIAVSGGI 120 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 DVP+ LGSRSTY +G LGG+KGR L GDELPVG SV V+DGR+V LR P G P E Sbjct: 121 DVPLALGSRSTYPIGTLGGYKGRALAVGDELPVGQGSV-VQDGRSVEEGLRRRP-GTPAE 178 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 LR +PGLYW R+T+ A FF+D WKVAPEADR+GYRF+GG+ LEFV R+ PFGAGSDPS Sbjct: 179 LRVLPGLYWDRLTDEAKKSFFADPWKVAPEADRMGYRFRGGRKLEFVERKQPFGAGSDPS 238 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 NI D+CYPYGSIQVPGGTEPI+LHRDAVSGGGYFM+GTVI+ADMDLIGQLQP+TP +FV+ Sbjct: 239 NIVDSCYPYGSIQVPGGTEPIILHRDAVSGGGYFMLGTVISADMDLIGQLQPHTPTRFVE 298 Query: 301 VDMNQALAARKSRTELLGKLRSAM 324 V M +ALAAR R L+ ++R+ + Sbjct: 299 VTMEEALAARAERQALIERMRACL 322 >ref|ZP_05742302.1| urea carboxylase [Silicibacter sp. TrichCH4B] gb|EEW57623.1| urea carboxylase [Silicibacter sp. TrichCH4B] Length = 323 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/324 (70%), Positives = 262/324 (80%), Gaps = 2/324 (0%) Query: 1 MAVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMG 60 M + ++KPGLATTVQDLGRPGY+H+GIP G MDR AL AAN+LVGN+ GAA LEAVFMG Sbjct: 1 MTLEIVKPGLATTVQDLGRPGYFHLGIPEGGAMDRLALSAANMLVGNEDGAACLEAVFMG 60 Query: 61 PELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGI 120 PE++F D TVAVTGAELP LDG PR+TWTSF VK GQ+LSF FLK GAR YIAV+GGI Sbjct: 61 PEVKFGADMTVAVTGAELPVMLDGAPRDTWTSFSVKAGQVLSFGFLKEGARIYIAVSGGI 120 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 D P LGSRSTYA+GALGGF+GR + AGD +PVG A + DGR+V LR P G P Sbjct: 121 DTPPALGSRSTYAIGALGGFEGRPVAAGDVIPVGKA-MEGSDGRSVPQALRRRP-GKPAV 178 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 LR +PGLYWHR+TE + N FF D W VAPEADR+GYRF+GG+ +EFV RE PFGAGSDPS Sbjct: 179 LRVLPGLYWHRLTEKSQNAFFDDDWTVAPEADRMGYRFRGGQQMEFVVREQPFGAGSDPS 238 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 NI D CY YGSIQVPGG EPIVLHRDAVSGGGYF +G VI+ADMDLIGQLQPN PVKF + Sbjct: 239 NIVDGCYSYGSIQVPGGLEPIVLHRDAVSGGGYFTLGAVISADMDLIGQLQPNAPVKFER 298 Query: 301 VDMNQALAARKSRTELLGKLRSAM 324 VDM+QALAARK+R E + ++R A+ Sbjct: 299 VDMDQALAARKARKETIEQIRQAL 322 >ref|YP_003693504.1| urea amidolyase-like protein [Starkeya novella DSM 506] gb|ADH88885.1| urea amidolyase related protein [Starkeya novella DSM 506] Length = 331 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/319 (71%), Positives = 263/319 (82%), Gaps = 3/319 (0%) Query: 2 AVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMGP 61 ++ V+KPGLATTVQDLGRPGYYH+G+PLSG MDR AL+AAN LVGN+ GAA LEAVF+GP Sbjct: 5 SIEVVKPGLATTVQDLGRPGYYHLGLPLSGAMDRFALIAANRLVGNEDGAAGLEAVFLGP 64 Query: 62 ELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGID 121 EL FT DA VAVTGAELPPKLDG + WT+F VK GQ+LSF FLK GAR YIA+AGGID Sbjct: 65 ELRFTSDALVAVTGAELPPKLDGVEQPLWTAFAVKAGQVLSFAFLKSGARAYIAIAGGID 124 Query: 122 VPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTEL 181 VP VLGSRSTYALGALGGF+GR L+AGD +P+G S ++G T+ + R E+ Sbjct: 125 VPEVLGSRSTYALGALGGFEGRALKAGDVVPLGTPSGAWREGATLPPEGRRPVQASGVEI 184 Query: 182 RAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPSN 241 R +PGLYWHR+TE A GFF DTWKVAPEADRIGYRF+GGK L+FVPRE PFGAGSDPSN Sbjct: 185 RVVPGLYWHRVTEDAQAGFFEDTWKVAPEADRIGYRFRGGKKLDFVPREQPFGAGSDPSN 244 Query: 242 ITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVKV 301 I D+CYPYGSIQVPGGTEPIVLHRDAVSGGGYFM+GTVIAADMDLIGQLQP+ PV+F V Sbjct: 245 IVDSCYPYGSIQVPGGTEPIVLHRDAVSGGGYFMIGTVIAADMDLIGQLQPHQPVRFTAV 304 Query: 302 DMNQALAAR---KSRTELL 317 +++AL AR K+R + L Sbjct: 305 TLDEALQARVVEKARVQGL 323