BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0055.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693498.1| AraC family transcriptional regulator [Stark... 506 e-141 ref|YP_004144568.1| AraC type helix-turn-helix- domain containin... 311 1e-82 ref|YP_004302455.1| AraC-family transcriptional regulator [Polym... 290 2e-76 ref|ZP_01157800.1| transcriptional regulator, AraC family protei... 288 6e-76 ref|ZP_05958586.1| transcriptional regulator [Brucella pinnipedi... 284 1e-74 >ref|YP_003693498.1| AraC family transcriptional regulator [Starkeya novella DSM 506] gb|ADH88879.1| transcriptional regulator, AraC family [Starkeya novella DSM 506] Length = 319 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/319 (73%), Positives = 277/319 (86%) Query: 1 MQVTYTTNDIPLQTRRQYWQEVVSKTYYSLDLRFPSTRDFNARLGAWSMGPVSVSRNIAN 60 M+ Y+TN + RRQ WQ+ VSKTY+ LDLRF S +F+ LGAWS+GPV+VSRN+++ Sbjct: 1 MRAGYSTNQVAPALRRQLWQDAVSKTYFPLDLRFGSGSEFSGSLGAWSLGPVAVSRNVSD 60 Query: 61 GLLYKRHERHLLSEREESFLITVPELAEIRFEQDGKVVHCRPGAFLIERSHLPYEFSHQD 120 GL+Y+RHERHL++EREES+LITVPELAE+RFEQDG+ V CRPGAFLIERSHLPYEFSH+D Sbjct: 61 GLVYRRHERHLVTEREESYLITVPELAEVRFEQDGREVCCRPGAFLIERSHLPYEFSHRD 120 Query: 121 PTALWCLKIPSAVLRARISRPERLATLQFDASRSVGALFVDTLRLSGERIEEMDETARTM 180 P ALW LK+P+AVLR RI RPERLATLQFDASRSVGA+FVD LRL+G RI+EMDE AR + Sbjct: 121 PAALWVLKVPAAVLRTRIVRPERLATLQFDASRSVGAIFVDMLRLTGARIDEMDEPARAL 180 Query: 181 MGKHLIELLAMAIESDDRVLTGHSSSVRNGHLLRCEQFIRARLDDMRLTPQMIADGCGIS 240 MGK L++LLAMAIE+D+RVL GHSSSVRN HL RCE FIR+RL D+RL+PQM+A+GCGIS Sbjct: 181 MGKQLVDLLAMAIEADERVLAGHSSSVRNAHLHRCEHFIRSRLGDVRLSPQMVAEGCGIS 240 Query: 241 LRYLHQIFEGEGLTVCAYIRNQRLSMCDALLRDANCRESISEIAYQWGFADQAQFSRNYR 300 +RYLHQIFEGE +TV AYIRNQRL C+A+LRD NCR+SISEIAY+WGF DQAQFSRNYR Sbjct: 241 VRYLHQIFEGENITVGAYIRNQRLLACEAMLRDPNCRKSISEIAYEWGFGDQAQFSRNYR 300 Query: 301 GRFGCTPSEARAISRTANS 319 RFGCTPSE RA SR+ S Sbjct: 301 TRFGCTPSETRADSRSPAS 319 >ref|YP_004144568.1| AraC type helix-turn-helix- domain containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV14518.1| helix-turn-helix- domain containing protein AraC type [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 326 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 143/309 (46%), Positives = 205/309 (66%) Query: 3 VTYTTNDIPLQTRRQYWQEVVSKTYYSLDLRFPSTRDFNARLGAWSMGPVSVSRNIANGL 62 + Y + I WQ V++ Y+ LD + + R+F+ L +S+G VSVS+ + + Sbjct: 1 MKYVVDTIGGPAGGDAWQAAVTEAYFPLDTEYRNRREFSGTLETFSLGLVSVSKMRCDAV 60 Query: 63 LYKRHERHLLSEREESFLITVPELAEIRFEQDGKVVHCRPGAFLIERSHLPYEFSHQDPT 122 Y+RH RH L+ER+ S LIT+PE++E+ F Q + V+CRPG FL+ER PYEF H P Sbjct: 61 SYRRHRRHFLNERDASLLITIPEMSEVNFSQGSRTVNCRPGGFLVERGDAPYEFWHGKPN 120 Query: 123 ALWCLKIPSAVLRARISRPERLATLQFDASRSVGALFVDTLRLSGERIEEMDETARTMMG 182 ALW LK+PS+ +RARI ERL+ L FDA++ + ALF+DT+R + ++E+ E AR MMG Sbjct: 121 ALWVLKVPSSSVRARIGSAERLSALSFDATQGIAALFLDTVRTTIGHLDEITEVAREMMG 180 Query: 183 KHLIELLAMAIESDDRVLTGHSSSVRNGHLLRCEQFIRARLDDMRLTPQMIADGCGISLR 242 +H++E+L ++I SDDRVL SS+R GHL R EQ+IR L + L PQ +AD CGISLR Sbjct: 181 RHILEMLCLSIVSDDRVLDSSISSIRAGHLHRAEQYIRDNLKNSDLGPQAVADACGISLR 240 Query: 243 YLHQIFEGEGLTVCAYIRNQRLSMCDALLRDANCRESISEIAYQWGFADQAQFSRNYRGR 302 YL +F+ ++ +IR+ RL +C L S++EIAY+WGFADQ+QF ++YR R Sbjct: 241 YLQVLFQDSNQSINGFIRDARLELCAEELMSVTNISSVAEIAYRWGFADQSQFCKHYRTR 300 Query: 303 FGCTPSEAR 311 FGC P++ R Sbjct: 301 FGCAPTDTR 309 >ref|YP_004302455.1| AraC-family transcriptional regulator [Polymorphum gilvum SL003B-26A1] gb|ADZ69156.1| AraC-family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 318 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 141/311 (45%), Positives = 197/311 (63%) Query: 1 MQVTYTTNDIPLQTRRQYWQEVVSKTYYSLDLRFPSTRDFNARLGAWSMGPVSVSRNIAN 60 M+ T TT DI + R ++W E + + Y+ LDL F S F+ L W +G VS+SR ++ Sbjct: 1 MKTTITTKDIDIAGRSRHWHEAIGRAYFPLDLTFRSPEAFDGELSMWQLGEVSLSRLTSD 60 Query: 61 GLLYKRHERHLLSEREESFLITVPELAEIRFEQDGKVVHCRPGAFLIERSHLPYEFSHQD 120 LLY+R +H E FL+T+P +E+RF Q GK V PG+F IERSH PYEFSH + Sbjct: 61 ALLYRRLPKHFQQPGPEEFLVTLPAKSEVRFSQGGKEVRAAPGSFFIERSHEPYEFSHAE 120 Query: 121 PTALWCLKIPSAVLRARISRPERLATLQFDASRSVGALFVDTLRLSGERIEEMDETARTM 180 LW +K+ SA+L R+ P R +L+FDA+ LFVD + L +R + M E R+ Sbjct: 121 HADLWVMKLSSAMLGTRLRAPGRFCSLEFDATNGANGLFVDMIHLIPQRYDAMTEETRST 180 Query: 181 MGKHLIELLAMAIESDDRVLTGHSSSVRNGHLLRCEQFIRARLDDMRLTPQMIADGCGIS 240 +G+ L++LLA+A++SD+RVLT +SSVR HL R E F+R + + L P +A GCGIS Sbjct: 181 VGRQLVDLLALALQSDERVLTSGASSVRAAHLGRIEAFVRRHIANPDLGPDEVAAGCGIS 240 Query: 241 LRYLHQIFEGEGLTVCAYIRNQRLSMCDALLRDANCRESISEIAYQWGFADQAQFSRNYR 300 +RYLH++ T+ +IR+QRL+ LR++ SI EIAY GF DQAQFSR +R Sbjct: 241 VRYLHELLRDTNQTLGQWIRDQRLAAAYEDLRNSADGRSIGEIAYARGFTDQAQFSRAFR 300 Query: 301 GRFGCTPSEAR 311 R+G TP+EAR Sbjct: 301 NRYGITPTEAR 311 >ref|ZP_01157800.1| transcriptional regulator, AraC family protein [Oceanicola granulosus HTCC2516] gb|EAR50102.1| transcriptional regulator, AraC family protein [Oceanicola granulosus HTCC2516] Length = 315 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 140/293 (47%), Positives = 183/293 (62%) Query: 19 WQEVVSKTYYSLDLRFPSTRDFNARLGAWSMGPVSVSRNIANGLLYKRHERHLLSEREES 78 WQ VS Y+ L+ + F L W+MG + +SR + +LY+R RH L+E E S Sbjct: 15 WQSQVSDAYFQLETDYRDREAFRGSLQRWNMGVIDLSRIECDAVLYRRKRRHFLNETESS 74 Query: 79 FLITVPELAEIRFEQDGKVVHCRPGAFLIERSHLPYEFSHQDPTALWCLKIPSAVLRARI 138 LI +PE ++F Q + CRPG FLIERS PYE+ H P A W LK+P++ +RAR+ Sbjct: 75 LLIAIPETESVQFIQSERRTSCRPGGFLIERSDAPYEYWHAAPNAQWVLKVPTSSVRARV 134 Query: 139 SRPERLATLQFDASRSVGALFVDTLRLSGERIEEMDETARTMMGKHLIELLAMAIESDDR 198 RL L FDA V F+ +LR + + ++DE R G+HL++LL +AI+ DDR Sbjct: 135 GPSGRLGGLTFDAREGVANYFLTSLRAAAAHVADLDEAGREAAGRHLLDLLCLAIQRDDR 194 Query: 199 VLTGHSSSVRNGHLLRCEQFIRARLDDMRLTPQMIADGCGISLRYLHQIFEGEGLTVCAY 258 VL +SSVR HL R EQ IR RL D LTPQ +AD CGISLRYL Q+F +V Y Sbjct: 195 VLHSQTSSVRAAHLFRAEQVIRDRLKDRDLTPQAVADACGISLRYLQQLFAETEQSVQGY 254 Query: 259 IRNQRLSMCDALLRDANCRESISEIAYQWGFADQAQFSRNYRGRFGCTPSEAR 311 IR +RLS CD LR +S++EIAY+WGFADQ+QFSR+Y+ RFG TP AR Sbjct: 255 IRERRLSRCDEDLRQPGRSDSVAEIAYRWGFADQSQFSRHYKARFGRTPRAAR 307 >ref|ZP_05958586.1| transcriptional regulator [Brucella pinnipedialis B2/94] ref|ZP_06000421.1| transcriptional regulator [Brucella sp. F5/99] ref|ZP_06099168.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gb|EEY02109.1| transcriptional regulator [Brucella pinnipedialis B2/94] gb|EEY24692.1| transcriptional regulator [Brucella sp. F5/99] gb|EEZ29069.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 320 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/315 (44%), Positives = 190/315 (60%) Query: 1 MQVTYTTNDIPLQTRRQYWQEVVSKTYYSLDLRFPSTRDFNARLGAWSMGPVSVSRNIAN 60 M+ + TT+ R ++W + ++ Y+ LDL F F+ L W G VS+SR ++ Sbjct: 1 MKTSITTSATRAPDRSRHWHDAIASAYFPLDLHFREADRFSGDLTTWEFGNVSISRLTSD 60 Query: 61 GLLYKRHERHLLSEREESFLITVPELAEIRFEQDGKVVHCRPGAFLIERSHLPYEFSHQD 120 L Y R H S REE FL+TVP AE+ F Q G+ V CRPG F +ERS PY FSH + Sbjct: 61 ALQYLRLPHHFGSSREEEFLVTVPVKAEVYFSQCGREVRCRPGGFFLERSSEPYHFSHAE 120 Query: 121 PTALWCLKIPSAVLRARISRPERLATLQFDASRSVGALFVDTLRLSGERIEEMDETARTM 180 +W LK+ L R+ P+R TLQF A+ G LF D L+L +R + M + AR Sbjct: 121 AADMWVLKVEGDALCGRMRAPDRFCTLQFGANNGAGGLFTDMLQLLPDRFDGMTQEARIT 180 Query: 181 MGKHLIELLAMAIESDDRVLTGHSSSVRNGHLLRCEQFIRARLDDMRLTPQMIADGCGIS 240 +G+ L++LL +AI++DDRVLT +S+VR+ HL R E +IR L D RL P IA CGIS Sbjct: 181 VGRQLVDLLVLAIKADDRVLTSGNSTVRSAHLARIEAYIRTNLQDFRLDPDRIARACGIS 240 Query: 241 LRYLHQIFEGEGLTVCAYIRNQRLSMCDALLRDANCRESISEIAYQWGFADQAQFSRNYR 300 RYLH++F+ G TV +IR QRL+ C L D + ++ +EIAY WGF DQ QFSR ++ Sbjct: 241 TRYLHELFKDTGQTVRHWIREQRLAACREALEDPDNIQTAAEIAYSWGFNDQTQFSRAFK 300 Query: 301 GRFGCTPSEARAISR 315 +FG P E R +R Sbjct: 301 AQFGLPPGEHRENAR 315