BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0052.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693494.1| periplasmic protein/LacI transcriptional reg... 611 e-173 ref|ZP_01076893.1| hypothetical periplasmic protein TorT [Marino... 260 2e-67 ref|YP_611490.1| TMAO reductase system periplasmic protein TorT ... 251 1e-64 ref|ZP_03528701.1| periplasmic sensory protein associated with t... 249 4e-64 ref|ZP_08733014.1| TMAO reductase system periplasmic protein Tor... 249 8e-64 >ref|YP_003693494.1| periplasmic protein/LacI transcriptional regulator [Starkeya novella DSM 506] gb|ADH88875.1| periplasmic binding protein/LacI transcriptional regulator [Starkeya novella DSM 506] Length = 369 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/352 (86%), Positives = 327/352 (92%), Gaps = 1/352 (0%) Query: 16 RRAL-GLAAGLTLATAVAPAAAETPWFPMKVYDASSGTPKPAEYTPLPKAEKPYRLCVLF 74 RRAL G A A +++PAAA+ WFPMK+YD+SSGTPKPAEYTPL KA+KPY +CVLF Sbjct: 18 RRALTGAALIAFAAASLSPAAAQEKWFPMKIYDSSSGTPKPAEYTPLAKAQKPYNICVLF 77 Query: 75 PHMKDSFWVAVAYGIVKQAEAMNVNMNLYEAGGYENLPKQLSQFDDCMASGPDAIIVGAI 134 PHMKDSFWVAVAYG+VKQAEA NVNMNLYEAGGYENLPKQLSQFDDCMA+ DAIIVG I Sbjct: 78 PHMKDSFWVAVAYGVVKQAEASNVNMNLYEAGGYENLPKQLSQFDDCMAAKADAIIVGTI 137 Query: 135 SGAGLSKKFEEAKAKGVPVVGVTNPLPPNALPAANYVDFVAMGEVNGAGLLAQTKPGDKL 194 SGAGL KKFEEAKAKG+PVVGVTNPLPPNALPAANYVDF AMGEV G GLLAQ+KP ++L Sbjct: 138 SGAGLMKKFEEAKAKGIPVVGVTNPLPPNALPAANYVDFTAMGEVTGEGLLAQSKPDEEL 197 Query: 195 NIVTFPGPAGSGWAESFNEGFKKAVAKNPNAKILAEKFGDSGVAVQLQLIQDALQAYPGM 254 NIVTFPGPAGSGWAE+FNEGFKKAVAKNP AKIL EKFGDSGVAVQLQLIQDALQAYP M Sbjct: 198 NIVTFPGPAGSGWAEAFNEGFKKAVAKNPKAKILGEKFGDSGVAVQLQLIQDALQAYPSM 257 Query: 255 NVIWGTAPTAEAAIGAVAEAGRSDLKIVSSYENQAMLDALNRGDILAFATQYPVGEGAVA 314 NVIWG+APTAEAAIGAVAEAGRSD+K++SSYENQAMLDALNRGDILAFATQYPVGEGA+A Sbjct: 258 NVIWGSAPTAEAAIGAVAEAGRSDIKVISSYENQAMLDALNRGDILAFATQYPVGEGAIA 317 Query: 315 IDQAVRLIEKKPVMSLVQPIAAVIDKTTVPKLQMDLVLAPASWTPVYSVKAK 366 IDQAVRLIEKKPV +LVQPIAAVIDKTTVPK+QMDLVLAPASW+PVYSVKAK Sbjct: 318 IDQAVRLIEKKPVTALVQPIAAVIDKTTVPKVQMDLVLAPASWSPVYSVKAK 369 >ref|ZP_01076893.1| hypothetical periplasmic protein TorT [Marinomonas sp. MED121] gb|EAQ65112.1| hypothetical periplasmic protein TorT [Marinomonas sp. MED121] Length = 365 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 217/357 (60%), Gaps = 9/357 (2%) Query: 13 WPIRRALGLAAGLTLATAVAPAAAETPWFPMKVYDASSGTPKP---AEYTPLPKAEKPYR 69 W + + + AG + T+++ A A+ F ++V++ + P +Y L KA+K + Sbjct: 11 WLKQPNVSVLAGALILTSISQAQADES-FHVEVWEPAFDMSSPRHQQDYVRLDKAQKQWD 69 Query: 70 LCVLFPHMKDSFWVAVAYGIVKQAEAMNVNMNLYEAGGYENLPKQLSQFDDCMASGPDAI 129 +CV FPHMKD++W AV YGIV +A+ + V M L EAGGY NL KQ+SQ +DC++SG DA+ Sbjct: 70 ICVSFPHMKDAYWTAVNYGIVSEAKRLGVQMQLVEAGGYTNLSKQISQIEDCISSGADAL 129 Query: 130 IVGAISGAGLSKKFEEAKAKGVPVVGVTNPLPPNALPAANYVDFVAMGEVNGAGLLAQTK 189 +VGAIS GL+ +EAK KG+PV+ + N + + + A + V F MG G LA Sbjct: 130 VVGAISYDGLNNVIKEAKQKGIPVIDIINGVSSSDIAAKSLVSFGEMGFKAGE-YLADLH 188 Query: 190 P--GDKLNIVTFPGPAGSGWAESFNEGFKKAVAKNPNAKILAEKFGDSGVAVQLQLIQDA 247 P +K+ + FPGP G+GW E+ N+GF+ A+ KN N ++ K+GD+G QL+L++D Sbjct: 189 PIGSEKVKVAWFPGPPGAGWVEAGNKGFQAAI-KNSNVTLVETKYGDTGKETQLKLVEDT 247 Query: 248 LQAYPGMNVIWGTAPTAEAAIGAVAEAGRSD-LKIVSSYENQAMLDALNRGDILAFATQY 306 L+A+P +N I GTA TAEAA+ + +D +K++S Y A+ A+ G ++A T Sbjct: 248 LEAHPDINYIVGTAVTAEAAVVLLRSRELTDQIKLMSYYYTPAIHRAIQYGQVMAAPTDS 307 Query: 307 PVGEGAVAIDQAVRLIEKKPVMSLVQPIAAVIDKTTVPKLQMDLVLAPASWTPVYSV 363 V +G +AIDQAVR++E KP V PI V+D + LAP ++ PV+ V Sbjct: 308 TVIQGRIAIDQAVRILENKPYEKHVGPILTVVDTFNIQDFNQSAALAPTNFKPVFQV 364 >ref|YP_611490.1| TMAO reductase system periplasmic protein TorT [Ruegeria sp. TM1040] gb|ABF62228.1| periplasmic binding protein/LacI transcriptional regulator [Ruegeria sp. TM1040] Length = 356 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/353 (40%), Positives = 208/353 (58%), Gaps = 11/353 (3%) Query: 19 LGLAAGLTLATAVAPAAAETPWFPMKVYD-----ASSGTPKPAEYTPLPKAEKPYRLCVL 73 L A+ L L+ A+ PA A+ WFP + ++ G+ Y PL AEKP+ +CV Sbjct: 5 LNTASALLLSVAL-PATAQEAWFPYPAEEVTPAFSADGSVAEITYEPLAAAEKPWNICVS 63 Query: 74 FPHMKDSFWVAVAYGIVKQAEAMNVNMNLYEAGGYENLPKQLSQFDDCMASGPDAIIVGA 133 FPHMKD++W+ V YG+V +AE + VN+N+ EAGGY L Q+SQ +DC+ASG DA+IVGA Sbjct: 64 FPHMKDAYWLGVDYGVVAEAERLGVNLNVVEAGGYTELNTQISQIEDCVASGADAVIVGA 123 Query: 134 ISGAGLSKKFEEAKAKGVPVVGVTNPLPPNALPAANYVDFVAMGEVNGAGLLAQTKP--G 191 IS GL+ E KG+PV+ V N + + A + V F MG G LA+ P Sbjct: 124 ISYDGLNNVISEVAGKGIPVIDVINGVSSTEIAAKSLVSFRTMGFETGK-YLAEKHPAGA 182 Query: 192 DKLNIVTFPGPAGSGWAESFNEGFKKAVAKNPNAKILAEKFGDSGVAVQLQLIQDALQAY 251 D + + FPGPAG+GW E+ N GF AV + K+L ++GD+G QL+L++D LQA Sbjct: 183 DPVTVGWFPGPAGAGWVEAANTGFMAAV-EGSAVKVLEPRYGDTGKEAQLKLVEDVLQAN 241 Query: 252 PGMNVIWGTAPTAEAAIGAVAEAG-RSDLKIVSSYENQAMLDALNRGDILAFATQYPVGE 310 P ++ I GTA TAEAA G + E G + ++ I++ Y + + RG I V + Sbjct: 242 PEISYIAGTAVTAEAAQGVIRERGLKGEVDILAFYMTPGVYSGIQRGFITGAPADSMVIQ 301 Query: 311 GAVAIDQAVRLIEKKPVMSLVQPIAAVIDKTTVPKLQMDLVLAPASWTPVYSV 363 G VA+DQAVR++E K + V P V+D+ V + + +L P ++PV+SV Sbjct: 302 GRVAVDQAVRVLEGKDYLKHVGPKIFVVDQDNVKDVARENILPPDGFSPVFSV 354 >ref|ZP_03528701.1| periplasmic sensory protein associated with the TorRS two-component regulatory system [Rhizobium etli CIAT 894] Length = 349 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 206/341 (60%), Gaps = 10/341 (2%) Query: 31 VAPAAAETPWFPMKVYD-----ASSGTPKPAEYTPLPKAEKPYRLCVLFPHMKDSFWVAV 85 +A AA W+P A+ G +Y PL KAEK + +CV FPHMKD++W+ V Sbjct: 10 LASAAHADTWYPYLAQKIEPAFAADGKSVDVDYIPLEKAEKAWNVCVSFPHMKDAYWLGV 69 Query: 86 AYGIVKQAEAMNVNMNLYEAGGYENLPKQLSQFDDCMASGPDAIIVGAISGAGLSKKFEE 145 YG+V+QA+ + + +N+ EAGGY L KQ+SQ +DC+A G A+++GAIS GL+ E Sbjct: 70 DYGVVEQAKDLGIKLNVVEAGGYTELAKQISQIEDCVAGGAQAVVIGAISFDGLNNLVNE 129 Query: 146 AKAKGVPVVGVTNPLPPNALPAANYVDFVAMGEVNGAGLLAQTKP--GDKLNIVTFPGPA 203 KG+PV+ V N + + A + V F MG G+ LA+ P GD + + FPGPA Sbjct: 130 ITKKGIPVIDVINGISSPNVTAKSLVSFYTMGYETGS-YLAKKHPAGGDPVKVGWFPGPA 188 Query: 204 GSGWAESFNEGFKKAVAKNPNAKILAEKFGDSGVAVQLQLIQDALQAYPGMNVIWGTAPT 263 G+GW E+ N+GF +AV K + +IL KFGD+G VQL+L++D LQA P + I GTA T Sbjct: 189 GAGWVEAANKGFLEAV-KGSSLQILDPKFGDTGKEVQLKLVEDVLQAEPDVKYIAGTAVT 247 Query: 264 AEAAIGAVAEAG-RSDLKIVSSYENQAMLDALNRGDILAFATQYPVGEGAVAIDQAVRLI 322 AEAA G + E G + ++++S Y + + + RG I A V +G VA+DQAVR + Sbjct: 248 AEAAQGLIRERGLKGQVELLSFYMTPGVFEGIKRGLIAASPADSMVIQGRVAVDQAVRAL 307 Query: 323 EKKPVMSLVQPIAAVIDKTTVPKLQMDLVLAPASWTPVYSV 363 EKK ++ V P V+D + + +++ D +L P + P ++V Sbjct: 308 EKKELVKHVGPKIFVVDSSNISQVRKDTILPPDGFKPQFNV 348 >ref|ZP_08733014.1| TMAO reductase system periplasmic protein TorT [Vibrio nigripulchritudo ATCC 27043] gb|EGU59362.1| TMAO reductase system periplasmic protein TorT [Vibrio nigripulchritudo ATCC 27043] Length = 361 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 147/362 (40%), Positives = 212/362 (58%), Gaps = 15/362 (4%) Query: 15 IRRALGLAAGLTL----ATAVAPAAAETPW-FPMKV----YDASSGTPKPAEYTPLPKAE 65 ++R AA LTL A A +P + W + + V +D SS K +Y P+ KA+ Sbjct: 1 MKRNTSHAAWLTLTAIFAVASSPTSHAKDWSYTVDVWTTPFDMSSDR-KVMDYKPVTKAQ 59 Query: 66 KPYRLCVLFPHMKDSFWVAVAYGIVKQAEAMNVNMNLYEAGGYENLPKQLSQFDDCMASG 125 KP+ +CV FPH+KD++W AV YG+V +A+ V M L EAGGY NL Q+SQ +DC+ASG Sbjct: 60 KPWDICVSFPHLKDAYWTAVNYGVVAEAKRTGVGMQLVEAGGYTNLNNQISQIEDCVASG 119 Query: 126 PDAIIVGAISGAGLSKKFEEAKAKGVPVVGVTNPLPPNALPAANYVDFVAMGEVNGAGLL 185 DA+I+GAIS GL+ + G+PV+ + N + L A + V F MG G L Sbjct: 120 ADAVIIGAISYEGLNNLVKNIAKSGIPVIDIVNGMSSPDLSAKSLVSFGEMGSKIGK-YL 178 Query: 186 AQTKPGD--KLNIVTFPGPAGSGWAESFNEGFKKAVAKNPNAKILAEKFGDSGVAVQLQL 243 A D K+ + FPGP G+GW E+ N+GF+ A+ + N +++ K+GD+G VQL+L Sbjct: 179 ADIHKHDNKKVKVGWFPGPPGAGWVEAGNKGFQSAI-EGSNIEVVETKYGDTGKEVQLKL 237 Query: 244 IQDALQAYPGMNVIWGTAPTAEAAIGAVAEAGRSD-LKIVSSYENQAMLDALNRGDILAF 302 ++D L+A+P + I GTA TAEAA + G ++ +K++S Y + + R ILA Sbjct: 238 VEDTLEAHPDLEYIVGTAVTAEAATSLLRARGLTNQIKVLSYYFTPGVYQGIKRKLILAA 297 Query: 303 ATQYPVGEGAVAIDQAVRLIEKKPVMSLVQPIAAVIDKTTVPKLQMDLVLAPASWTPVYS 362 T V +G VAIDQAVR++E KP V P VID + + D LAPA++ P +S Sbjct: 298 PTDSAVIQGRVAIDQAVRILEGKPYTKHVGPQLYVIDASIIDHFDRDSSLAPANFKPTFS 357 Query: 363 VK 364 VK Sbjct: 358 VK 359