BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0051.p (512 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693493.1| ABC transporter [Starkeya novella DSM 506] >... 847 0.0 ref|YP_002822347.1| ribose import ATP-binding protein rbsA [Sino... 489 e-136 ref|ZP_01076894.1| sugar ABC transporter ATP-binding protein [Ma... 489 e-136 ref|YP_521416.1| ABC transporter-like protein [Rhodoferax ferrir... 474 e-131 ref|ZP_06053195.1| ABC transporter ATP-binding protein [Grimonti... 474 e-131 >ref|YP_003693493.1| ABC transporter [Starkeya novella DSM 506] gb|ADH88874.1| ABC transporter related protein [Starkeya novella DSM 506] Length = 515 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/500 (83%), Positives = 458/500 (91%) Query: 13 LLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSGTFPPDEGTFHF 72 LL L+GISKRFTGVRALD VDLDVRAGELHVLFGENGAGKSTLINV++GTFPPDEG+FHF Sbjct: 16 LLELKGISKRFTGVRALDHVDLDVRAGELHVLFGENGAGKSTLINVIAGTFPPDEGSFHF 75 Query: 73 GDEEIHHLTPQRARTIGISPVFQEFSLIPSLTVEENLFLGREVTHGSVLRSREMRKRARA 132 EEI HL+PQRAR IGISPVFQEFSL+PSLTVEENLFLGREV+ G VLR+ MRK+ARA Sbjct: 76 DGEEIRHLSPQRARAIGISPVFQEFSLVPSLTVEENLFLGREVSTGGVLRAGAMRKKARA 135 Query: 133 LIDELGFDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTASLTERETGRLFELI 192 LIDELGFDLDP +R+DDLSRAHQQMAEIAKALLG+VRLLILDEPTASLTERETGRLFELI Sbjct: 136 LIDELGFDLDPGRRVDDLSRAHQQMAEIAKALLGKVRLLILDEPTASLTERETGRLFELI 195 Query: 193 ARLKSQNVGLIYVSHRMREIRALADRVTVLRDGRHIQTLDAAGSTDGELVELMTGRRIDL 252 A+LK+Q VGLIYVSHRMREIRALADRVTVLRDGRHI+TLDAA TDGELVELMTGRRID+ Sbjct: 196 AKLKAQGVGLIYVSHRMREIRALADRVTVLRDGRHIRTLDAARVTDGELVELMTGRRIDV 255 Query: 253 LFPTIAHRPDKVMVDIENLTLADGSVQEVNFHARAGEITGIAGLVGCGKSELIRAVYGIE 312 LFPTI H P +V VD+E+LTLADGSVQEVNF+AR+GEITGIAGLVGCGKSEL+RA+YG+E Sbjct: 256 LFPTIPHAPTEVAVDVEDLTLADGSVQEVNFYARSGEITGIAGLVGCGKSELVRAIYGLE 315 Query: 313 PTASGVIRIDGLPYEFPAPRQSLKRGIAYFPANRVAEGLALSRPIRENASMTVLDLPAFA 372 P G +RI+G PY+ P+PR+SL G+AYFPANRVAEGLALSRPIRENASMT LDLPAFA Sbjct: 316 PIVGGTMRIEGTPYDAPSPRESLTHGVAYFPANRVAEGLALSRPIRENASMTALDLPAFA 375 Query: 373 RYGVLRQAAERITIADIMERLQLRPPNIERSVGALSGGNRQKVMLARALTRELTVFLFDE 432 R+G+LRQ AER + MERL+LRPPNIER GALSGGNRQKVML RALTREL VFLFDE Sbjct: 376 RFGLLRQGAERGLVGRAMERLKLRPPNIERPAGALSGGNRQKVMLGRALTRELKVFLFDE 435 Query: 433 PSVGIDVGAKLEVYQFMKRLVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIAAELKGAE 492 PSVGIDVGAKLEVY+FMK+LVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIA EL G + Sbjct: 436 PSVGIDVGAKLEVYEFMKQLVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIATELTGDD 495 Query: 493 KTEQNVLSSFFRDHLAAEVA 512 KTEQNVL+SFF++HLA E A Sbjct: 496 KTEQNVLASFFKEHLATEAA 515 >ref|YP_002822347.1| ribose import ATP-binding protein rbsA [Sinorhizobium fredii NGR234] gb|ACP21594.1| ribose import ATP-binding protein rbsA [Sinorhizobium fredii NGR234] Length = 516 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 243/491 (49%), Positives = 344/491 (70%) Query: 13 LLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSGTFPPDEGTFHF 72 LL G++KR+ GV AL +D ++R GE+HVLFGENGAGKSTLI++++G P EG Sbjct: 21 LLTTEGLTKRYPGVTALASIDFELRHGEVHVLFGENGAGKSTLISLLAGAQQPTEGRIRM 80 Query: 73 GDEEIHHLTPQRARTIGISPVFQEFSLIPSLTVEENLFLGREVTHGSVLRSREMRKRARA 132 +E+ + AR G+ VFQEFSL+P LTVEEN+FLG+E G L +R++AR Sbjct: 81 CGQEVSFQSVHDARAHGVRAVFQEFSLVPQLTVEENMFLGQEFRRGPFLDKAMLRRQARE 140 Query: 133 LIDELGFDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTASLTERETGRLFELI 192 ++D L F+L P + LSRA QQM EIAKA V +LILDEPTASLTERET RLF LI Sbjct: 141 ILDRLEFELRPEALVATLSRADQQMVEIAKAFTEGVSVLILDEPTASLTERETDRLFALI 200 Query: 193 ARLKSQNVGLIYVSHRMREIRALADRVTVLRDGRHIQTLDAAGSTDGELVELMTGRRIDL 252 K G++Y++HRM EIR + DR+TVLRDGR + +L A + D +L+ELMTGR ID Sbjct: 201 ETAKRNGTGIVYITHRMAEIRRIGDRITVLRDGRKVASLRADEANDDQLIELMTGRVIDQ 260 Query: 253 LFPTIAHRPDKVMVDIENLTLADGSVQEVNFHARAGEITGIAGLVGCGKSELIRAVYGIE 312 ++P IAHRP++V+++++ +TLA+ ++ V+ + RAGE+ G+AGLVG GKS + RA +G+E Sbjct: 261 IYPRIAHRPERVLLELDRVTLANRLLRSVSLNVRAGEVVGVAGLVGSGKSNIGRAAFGLE 320 Query: 313 PTASGVIRIDGLPYEFPAPRQSLKRGIAYFPANRVAEGLALSRPIRENASMTVLDLPAFA 372 G IR G + ++ G+ Y P++R EGL + R REN +++ LD P+FA Sbjct: 321 KIEDGRIRFKGRDVTGFSVSTMMQEGLFYVPSDRRDEGLVMMRGARENMALSALDSPSFA 380 Query: 373 RYGVLRQAAERITIADIMERLQLRPPNIERSVGALSGGNRQKVMLARALTRELTVFLFDE 432 R+G+LR++AE +D+ + L+LRP ++ER V SGGN+QKVM+A+AL RE+ +F+FDE Sbjct: 381 RFGILRRSAEVKRASDLAKHLKLRPMDLERGVEQFSGGNQQKVMIAKALAREIDLFIFDE 440 Query: 433 PSVGIDVGAKLEVYQFMKRLVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIAAELKGAE 492 P+VG+DV + +Y+ + +L EAGA ++++SS+LPE+L LSNR YVM+ G + AEL GAE Sbjct: 441 PTVGVDVATRTSIYELIGKLCEAGAGILLISSDLPEILNLSNRAYVMYRGELRAELSGAE 500 Query: 493 KTEQNVLSSFF 503 T++NVL FF Sbjct: 501 ITQENVLGHFF 511 >ref|ZP_01076894.1| sugar ABC transporter ATP-binding protein [Marinomonas sp. MED121] gb|EAQ65113.1| sugar ABC transporter ATP-binding protein [Marinomonas sp. MED121] Length = 544 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/502 (47%), Positives = 346/502 (68%) Query: 2 DVEIDPKPAEPLLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSG 61 ++ + + +PLL+L ISK + GV ALD++ L + GE+H+LFGENGAGKSTLI+ ++G Sbjct: 37 NINTNNEKVQPLLKLDRISKLYPGVVALDKMQLTIMPGEVHILFGENGAGKSTLISTIAG 96 Query: 62 TFPPDEGTFHFGDEEIHHLTPQRARTIGISPVFQEFSLIPSLTVEENLFLGREVTHGSVL 121 G +F E++ + Q AR +GIS VFQEFSL+P L++ ENLFLG E +L Sbjct: 97 AHQASSGDMYFAGEKVLLHSVQEARKLGISAVFQEFSLVPQLSIAENLFLGAEPLRAGLL 156 Query: 122 RSREMRKRARALIDELGFDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTASLT 181 A+AL+ +LGF+LD Q++ LSRA QQM EIAKA ++LILDEPTASLT Sbjct: 157 DQTANLTAAKALLSKLGFELDAEQKVAYLSRAEQQMVEIAKAFRTEPKILILDEPTASLT 216 Query: 182 ERETGRLFELIARLKSQNVGLIYVSHRMREIRALADRVTVLRDGRHIQTLDAAGSTDGEL 241 E+E+ RLFEL+++LK++ VG+IY++HRM EIR + DR+T++RDG++I TL+ +++ L Sbjct: 217 EKESDRLFELVSQLKAKGVGIIYITHRMSEIRRIGDRITIMRDGKYISTLNVKDTSEDAL 276 Query: 242 VELMTGRRIDLLFPTIAHRPDKVMVDIENLTLADGSVQEVNFHARAGEITGIAGLVGCGK 301 + LMTGR ID +FP +A P + I NL+ D S+++V+ + GEI G+AGL+G GK Sbjct: 277 LTLMTGRVIDKVFPKVAFHPTSTALSINNLSTKDNSLKKVSIEVKRGEIVGLAGLIGSGK 336 Query: 302 SELIRAVYGIEPTASGVIRIDGLPYEFPAPRQSLKRGIAYFPANRVAEGLALSRPIRENA 361 SEL+RA +G+EP ASG + +G +P+Q L RG Y A+R EGLA++R REN Sbjct: 337 SELLRACFGLEPLASGSVHFNGEEVTGFSPKQMLDRGFFYNSADRKNEGLAMNRSCRENI 396 Query: 362 SMTVLDLPAFARYGVLRQAAERITIADIMERLQLRPPNIERSVGALSGGNRQKVMLARAL 421 ++ L F+ L++ E D+ ++LQL+P NIER V SGGN+QKV+LA+ L Sbjct: 397 TLASLTTQRFSLGLFLKRFKELKECKDLAKKLQLQPFNIEREVENFSGGNQQKVLLAKCL 456 Query: 422 TRELTVFLFDEPSVGIDVGAKLEVYQFMKRLVEAGAAVIVVSSELPEVLALSNRLYVMHH 481 TR++++++FDEP+VG+DVG + E+YQ + L E+GAAV+++SS+LPE++ LS+R YVM+ Sbjct: 457 TRDVSLYVFDEPTVGVDVGTRTEIYQLIANLCESGAAVVLISSDLPEIIHLSHRAYVMYR 516 Query: 482 GRIAAELKGAEKTEQNVLSSFF 503 G + AEL G EQ +L+ FF Sbjct: 517 GELKAELSGTNINEQMLLNHFF 538 >ref|YP_521416.1| ABC transporter-like protein [Rhodoferax ferrireducens T118] gb|ABD67885.1| ABC transporter related [Rhodoferax ferrireducens T118] Length = 497 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 246/497 (49%), Positives = 336/497 (67%), Gaps = 4/497 (0%) Query: 10 AEPLLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSGTFPPDEGT 69 ++ LL + G+SK+F GVRALD VD ++ AGE+H +FGENGAGKSTLI++++G P G Sbjct: 2 SDVLLSIEGLSKKFPGVRALDGVDFELLAGEVHAIFGENGAGKSTLISIIAGAQPQGSGI 61 Query: 70 FHFGDEEIHHLTPQRARTIGISPVFQEFSLIPSLTVEENLFLGREVTHG--SVLRSREMR 127 EE+ + AR GIS VFQEFSL P LTVEENL LG E H +L+ M Sbjct: 62 IRMHGEELRFSSVADARRHGISAVFQEFSLAPHLTVEENLCLGEERLHQRFGLLQLSAMS 121 Query: 128 KRARALIDELGFDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTASLTERETGR 187 + A AL+ L FD+DP + + LSRA QQM EIAKAL ++ +LILDEPTASLTERE+ + Sbjct: 122 RHASALLQRLNFDIDPQRVVATLSRAEQQMVEIAKALRAKLSVLILDEPTASLTERESEQ 181 Query: 188 LFELIARLKSQNVGLIYVSHRMREIRALADRVTVLRDGRHIQTLDAAGSTDGELVELMTG 247 LF + LK Q VG+IY++HR++EI+ LADRVTVLRDG+HI +DAA +T+ +L+E+M G Sbjct: 182 LFATVRSLKQQGVGIIYITHRIQEIKRLADRVTVLRDGKHIGVVDAATTTEAKLIEMMAG 241 Query: 248 RRIDLLFPTIAHRPDKVMVDIENLTLADGSVQEVNFHARAGEITGIAGLVGCGKSELIRA 307 R ++ ++P+IA P + ++++ + G + +F AR GE+ G+AGLVGCGKSEL+R Sbjct: 242 RTVEKIYPSIAANPGRTILELSQMRGGVG-IDVDHFVAREGEVVGVAGLVGCGKSELLRM 300 Query: 308 VYGIEPTASGVIRIDGLPYEFPAPRQSLKRGIAYFPANRVAEGLALSRPIRENASMTVL- 366 +GIEP SGV+++DG + P PR+ L G+ Y P +R EGL LS +N S+ L Sbjct: 301 AFGIEPMKSGVVKLDGQTIKKPTPRRMLDAGVFYLPPDRREEGLMLSASTADNISLNALT 360 Query: 367 DLPAFARYGVLRQAAERITIADIMERLQLRPPNIERSVGALSGGNRQKVMLARALTRELT 426 P R G L +AER DI R+ + P N+ R+ LSGGN+QKV+ R LTR + Sbjct: 361 QQPIHFRSGFLSLSAERTVTRDIGRRVDIHPSNMPRATALLSGGNQQKVLFGRGLTRSIK 420 Query: 427 VFLFDEPSVGIDVGAKLEVYQFMKRLVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIAA 486 +++FDEP+VG+DVG + +Y +K L E GAAVI++SS+LPE+L LS+R YVM GRIAA Sbjct: 421 LYIFDEPTVGVDVGTRSAIYYLIKELCEKGAAVILISSDLPEILHLSHRAYVMRSGRIAA 480 Query: 487 ELKGAEKTEQNVLSSFF 503 E+ + TE VL FF Sbjct: 481 EIDRSCLTEAAVLQHFF 497 >ref|ZP_06053195.1| ABC transporter ATP-binding protein [Grimontia hollisae CIP 101886] gb|EEY71945.1| ABC transporter ATP-binding protein [Grimontia hollisae CIP 101886] Length = 506 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 243/493 (49%), Positives = 337/493 (68%), Gaps = 1/493 (0%) Query: 12 PLLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSGTFPPDEGTFH 71 PLL L GI K++ GV+ALD VD + GE+HVLFGENGAGKSTLI+++ G P G Sbjct: 5 PLLSLNGIHKQYPGVKALDGVDFTLEPGEVHVLFGENGAGKSTLISIICGANQPTAGEIR 64 Query: 72 FGDEEIHHLTPQRARTIGISPVFQEFSLIPSLTVEENLFLGREVTHGSVLRSREMRKRAR 131 F D+ + + AR GIS VFQEFSL+ +LTV +NLFLG E G L + + A+ Sbjct: 65 FLDDTVRFNSVYDARQKGISAVFQEFSLVDTLTVAQNLFLGEEPLTGRFLDNTALHSDAQ 124 Query: 132 ALIDELGFDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTASLTERETGRLFEL 191 AL++++GF LD + +LSRA +QM EIAKAL G++ +LILDEPTASLT +ET +LF L Sbjct: 125 ALLEKMGFALDANLPVSELSRAEKQMVEIAKALRGKLSVLILDEPTASLTHQETEQLFSL 184 Query: 192 IARLKSQNVGLIYVSHRMREIRALADRVTVLRDGRHIQTLDAAGSTDGELVELMTGRRID 251 I +LK++ VG+IY+SHRM EIR +ADR+TVLRDG++I T + +L+ +MTGR ID Sbjct: 185 IEQLKAKEVGIIYISHRMGEIRQIADRITVLRDGKYIGTRKVDEVEEQDLITMMTGREID 244 Query: 252 LLFPTIAHRPDKVMVDIENLTLADGSVQEVNFHARAGEITGIAGLVGCGKSELIRAVYGI 311 ++P + P + ++D+ +L+ + +V+ ++FH RAGEI G AGLVGCGKSE +RA +G Sbjct: 245 NVYPHVPFLPTQTVLDVHSLSTHNRTVENLSFHVRAGEIVGFAGLVGCGKSEALRACFGA 304 Query: 312 EPTASGVIRIDGLPYEFPAPRQSLKRGIAYFPANRVAEGLALSRPIRENASMTVL-DLPA 370 E +SG + +G + R+ L RG Y +R EGL L+R REN S+ L LP Sbjct: 305 ERVSSGSVIFNGENVTGLSIREMLNRGFFYNSRDRKDEGLVLNRSCRENISLPSLGSLPL 364 Query: 371 FARYGVLRQAAERITIADIMERLQLRPPNIERSVGALSGGNRQKVMLARALTRELTVFLF 430 R+G L A ER + RL+L P ER VG SGGN+QKV+LA+ LTRE+++++F Sbjct: 365 SRRHGALDLAHEREQTHSLATRLKLYPMQTERDVGQFSGGNQQKVLLAKCLTREVSLYVF 424 Query: 431 DEPSVGIDVGAKLEVYQFMKRLVEAGAAVIVVSSELPEVLALSNRLYVMHHGRIAAELKG 490 DEP+VG+DVG + E+Y+F+ L E GAAV+++SS+LPEV+ LS+RLYVM G+IAA L+G Sbjct: 425 DEPTVGVDVGTRAEIYRFIASLCEQGAAVVIISSDLPEVVHLSHRLYVMREGQIAAHLQG 484 Query: 491 AEKTEQNVLSSFF 503 + +E L+ FF Sbjct: 485 TDISETEALNHFF 497 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 17/237 (7%) Query: 9 PAEPLLRLRGISKRFTGVRALDRVDLDVRAGELHVLFGENGAGKSTLINVVSGTFPPDEG 68 P + +L + +S T R ++ + VRAGE+ G G GKS + G G Sbjct: 254 PTQTVLDVHSLS---THNRTVENLSFHVRAGEIVGFAGLVGCGKSEALRACFGAERVSSG 310 Query: 69 TFHFGDEEIHHLTPQRARTIGI---SPVFQEFSLIPSLTVEENLFLGREVT------HGS 119 + F E + L+ + G S ++ L+ + + EN+ L + HG+ Sbjct: 311 SVIFNGENVTGLSIREMLNRGFFYNSRDRKDEGLVLNRSCRENISLPSLGSLPLSRRHGA 370 Query: 120 VLRSREMRKRARALIDELG-FDLDPAQRIDDLSRAHQQMAEIAKALLGRVRLLILDEPTA 178 + + E R++ +L L + + + + S +QQ +AK L V L + DEPT Sbjct: 371 LDLAHE-REQTHSLATRLKLYPMQTERDVGQFSGGNQQKVLLAKCLTREVSLYVFDEPTV 429 Query: 179 SLTERETGRLFELIARLKSQNVGLIYVSHRMREIRALADRVTVLRDGR---HIQTLD 232 + ++ IA L Q ++ +S + E+ L+ R+ V+R+G+ H+Q D Sbjct: 430 GVDVGTRAEIYRFIASLCEQGAAVVIISSDLPEVVHLSHRLYVMREGQIAAHLQGTD 486