BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0050.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693492.1| inner-membrane translocator [Starkeya novell... 471 e-131 ref|YP_611488.1| inner-membrane translocator [Ruegeria sp. TM104... 224 1e-56 ref|YP_003552098.1| inner-membrane translocator [Candidatus Puni... 224 2e-56 ref|ZP_06053194.1| ribose ABC transport system permease protein ... 218 1e-54 ref|ZP_05742354.1| inner-membrane translocator [Silicibacter sp.... 212 8e-53 >ref|YP_003693492.1| inner-membrane translocator [Starkeya novella DSM 506] gb|ADH88873.1| inner-membrane translocator [Starkeya novella DSM 506] Length = 341 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 261/322 (81%), Positives = 287/322 (89%), Gaps = 6/322 (1%) Query: 17 RSIAGRVGFLPALLVLLVAGMSAVDPQFYGIINILNILRNASLLAIVACGQALVIIAGGF 76 RS+ GR+GFLPALL+L++ GMSAVDPQFYG INILNILRNA+ L I+ACGQALVII GGF Sbjct: 20 RSLLGRIGFLPALLILVIVGMSAVDPQFYGPINILNILRNAAFLTIIACGQALVIIGGGF 79 Query: 77 DLSVGAVVALASVVXKKK------KIPGNNALIIASGMAAGLGSGAVVGLVNGFCVAKLK 130 DLSVGAVVALASVV K PGN+ALIIA G+AAGLGSGA VGLVNG CVA+LK Sbjct: 80 DLSVGAVVALASVVTAKTMGVIAASFPGNDALIIAGGLAAGLGSGAAVGLVNGLCVARLK 139 Query: 131 VSGFVVTLGTMSATAGVGLMITNGIPVYGMPDIFVKGFGRAQALGLPTAVHVALVIIIVM 190 VSGFVVTLGTMSATAGV LMIT+GIPVYGMP FV+ FGRAQ GLPTA++VAL++++VM Sbjct: 140 VSGFVVTLGTMSATAGVALMITSGIPVYGMPQSFVRDFGRAQFFGLPTAIYVALIVLLVM 199 Query: 191 VFAQRRTLFGRYVYAIGGNVDAAIVSGVSIQRHVVGTYVVSSMLAALTGILLTAQVGSGQ 250 VF QRRTLFGRYVYAIGGN DAAIVSGV +RH+VGTYV+S +LAALTGILLTAQVGSGQ Sbjct: 200 VFVQRRTLFGRYVYAIGGNTDAAIVSGVGTRRHLVGTYVLSGVLAALTGILLTAQVGSGQ 259 Query: 251 ASFGGDRMMLQSIAAAVIGGVSLRGGVGRIEIVAISALFLTILGNALNLLHVDSRLQPVF 310 ASFGGDRMMLQSIAAAVIGGVSLRGGVGR+EIVA+SALFLTILGNALNLLH+DSRLQPVF Sbjct: 260 ASFGGDRMMLQSIAAAVIGGVSLRGGVGRVEIVAVSALFLTILGNALNLLHIDSRLQPVF 319 Query: 311 LGVIMVAAVALDELSRRSKARV 332 LG+IMV AVALDEL RR K RV Sbjct: 320 LGIIMVVAVALDELGRRRKLRV 341 >ref|YP_611488.1| inner-membrane translocator [Ruegeria sp. TM1040] gb|ABF62226.1| inner-membrane translocator [Ruegeria sp. TM1040] Length = 336 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 145/333 (43%), Positives = 204/333 (61%), Gaps = 9/333 (2%) Query: 1 VNTALVTANPQGAIGLRSIAGRVGFLPALLVLLVAGMSAVDPQFYGIINILNILRNASLL 60 + T ++ NP G I R I RVG LP L+ + S + P+F NI+N++R + L Sbjct: 1 MTTQILPLNPFGVI--RKIFVRVGVLPFFLLAALVVFSLLSPKFLTGQNIVNVMRQSVYL 58 Query: 61 AIVACGQALVIIAGGFDLSVGAVVALASVVXKKKKI------PGNNALIIASGMAAGLGS 114 +V+ GQ LV+I+GGFDLSVG +AL SVV + P L+I G AGL + Sbjct: 59 VLVSLGQMLVLISGGFDLSVGTAIALTSVVSATAMVWLAGIFPDAIFLVILLGALAGLLA 118 Query: 115 GAVVGLVNGFCVAKLKVSGFVVTLGTMSATAGVGLMITNGIPVYGMPDIFVKGFGRAQAL 174 A VGL+NG VA VS F++TLG S G L++T G+PV G+P F FG + Sbjct: 119 AACVGLLNGIGVAYFDVSPFIMTLGASSLAGGAALLLTGGVPVSGLPFAFADVFGFGRLW 178 Query: 175 GLPTAVHVALVIIIVMVFAQRRTLFGRYVYAIGGNVDAAIVSGVSIQRHVVGTYVVSSML 234 G+P V VA++ I VM RT G VYA+GGN+ AA +S ++ +R ++ TYV +++ Sbjct: 179 GVPVPVIVAMICIAVMWVFMSRTSLGTQVYAVGGNIKAAHLSAINTKRTLMMTYVGCALI 238 Query: 235 AALTGILLTAQVGSGQASFGGDRMMLQSIAAAVIGGVSLRGGVGRIEIVAISALFLTILG 294 AALTG+LLTA+V SG+A+ GG + L+SIAA VI GVSLRGG+GR+E V + F+ ++ Sbjct: 239 AALTGLLLTARVESGEANLGGS-LTLESIAACVIAGVSLRGGIGRVENVVLGGFFIVLVQ 297 Query: 295 NALNLLHVDSRLQPVFLGVIMVAAVALDELSRR 327 N +NL V S +Q V LG +++ AV D+L R Sbjct: 298 NGMNLAQVSSYMQMVLLGALLILAVIFDQLRYR 330 >ref|YP_003552098.1| inner-membrane translocator [Candidatus Puniceispirillum marinum IMCC1322] gb|ADE40014.1| inner-membrane translocator [Candidatus Puniceispirillum marinum IMCC1322] Length = 342 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/315 (43%), Positives = 198/315 (62%), Gaps = 7/315 (2%) Query: 22 RVGFLPALLVLLVAGMSAVDPQFYGIINILNILRNASLLAIVACGQALVIIAGGFDLSVG 81 R+G LP LL++ V + + F N++N+LR + L IV+ GQ L ++ GGFDLSVG Sbjct: 25 RIGILPFLLMVAVIVFTLMSDNFLTGKNLMNVLRQSVYLTIVSMGQMLALLTGGFDLSVG 84 Query: 82 AVVALASVVXKKKKI------PGNNALIIASGMAAGLGSGAVVGLVNGFCVAKLKVSGFV 135 V+AL SV+ P L I G AG+ +G ++G++NG VA VS F+ Sbjct: 85 TVLALTSVIGALTMTTIYMASPDAVFLAITLGCLAGILAGTLIGVINGIGVAFFGVSPFM 144 Query: 136 VTLGTMSATAGVGLMITNGIPVYGMPDIFVKGFGRAQALGLPTAVHVALVIIIVMVFAQR 195 ++LG S G+ L +T G+PVYGMP F G LG+PT V+V ++I I++ Sbjct: 145 MSLGMASVGFGIALYLTGGVPVYGMPQAFGDIIGFGVFLGIPTPVYVTILIAILLYIFLY 204 Query: 196 RTLFGRYVYAIGGNVDAAIVSGVSIQRHVVGTYVVSSMLAALTGILLTAQVGSGQASFGG 255 RT FGRY+YA+GGN+ AA +SG+S + + TY + + LAAL+G+LLTA++ +G+A+ G Sbjct: 205 RTTFGRYLYAVGGNLKAARLSGISTRAVLFTTYTLCAALAALSGMLLTARLDTGEANIGA 264 Query: 256 DRMMLQSIAAAVIGGVSLRGGVGRIEIVAISALFLTILGNALNLLHVDSRLQPVFLGVIM 315 M LQSIAA VI GVSLRGGVGR+E V + ALF+ ++ N +NL ++S LQ V LG ++ Sbjct: 265 S-MPLQSIAACVIAGVSLRGGVGRLESVILGALFIGLVQNGMNLARIESYLQTVVLGALL 323 Query: 316 VAAVALDELSRRSKA 330 + AV D+L R A Sbjct: 324 ILAVIADQLRLRYLA 338 >ref|ZP_06053194.1| ribose ABC transport system permease protein RbsC [Grimontia hollisae CIP 101886] gb|EEY71944.1| ribose ABC transport system permease protein RbsC [Grimontia hollisae CIP 101886] Length = 352 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 213/337 (63%), Gaps = 7/337 (2%) Query: 2 NTALVTANPQGAIGLRSIAGRVGFLPALLVLLVAGMSAVDPQFYGIINILNILRNASLLA 61 NT L + Q L + +VG LP L+++ V ++ F N+LN+LR +S L Sbjct: 14 NTDLSASGGQFTHRLTRLFVKVGVLPILVIVAVTIFASASDNFLTTRNLLNLLRQSSYLV 73 Query: 62 IVACGQALVIIAGGFDLSVGAVVALASVVXKKK------KIPGNNALIIASGMAAGLGSG 115 +V+ GQ V++ GFDLSVG ++AL+SVV +P + L I +GMAAG+ G Sbjct: 74 MVSIGQMFVLLTAGFDLSVGTIIALSSVVGATTMAAVYAALPDSVHLAILAGMAAGVAVG 133 Query: 116 AVVGLVNGFCVAKLKVSGFVVTLGTMSATAGVGLMITNGIPVYGMPDIFVKGFGRAQALG 175 VVGL+NG VA +VS FV+TLG S G+ L +T G PVYGMP F FG LG Sbjct: 134 LVVGLINGVGVALFQVSPFVMTLGISSIGFGIALYMTGGSPVYGMPVEFGNTFGFGNILG 193 Query: 176 LPTAVHVALVIIIVMVFAQRRTLFGRYVYAIGGNVDAAIVSGVSIQRHVVGTYVVSSMLA 235 LPT + VAL++ + + RT GRY YA+GGN++AA +SG++ + ++ Y++ + A Sbjct: 194 LPTPIIVALLMTLFALVIVNRTRLGRYFYAVGGNINAARLSGINTHKTLILAYLLCASFA 253 Query: 236 ALTGILLTAQVGSGQASFGGDRMMLQSIAAAVIGGVSLRGGVGRIEIVAISALFLTILGN 295 A+ G+L+TA++ +G+A+ G M L+SIAA VI GVSLRGG+GR+E V + A+F++++ N Sbjct: 254 AMAGMLITARLDTGEANIGAA-MPLESIAACVIAGVSLRGGIGRVEHVVLGAVFISLVQN 312 Query: 296 ALNLLHVDSRLQPVFLGVIMVAAVALDELSRRSKARV 332 +NL V+S LQ V +G +++ AV +D++ R +A++ Sbjct: 313 GMNLTRVESYLQTVVIGALLIFAVIVDQIRIRLRAKL 349 >ref|ZP_05742354.1| inner-membrane translocator [Silicibacter sp. TrichCH4B] gb|EEW57675.1| inner-membrane translocator [Silicibacter sp. TrichCH4B] Length = 336 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 134/318 (42%), Positives = 195/318 (61%), Gaps = 7/318 (2%) Query: 16 LRSIAGRVGFLPALLVLLVAGMSAVDPQFYGIINILNILRNASLLAIVACGQALVIIAGG 75 +R I RVG LP L+ + + + P+F N++N++R + L +V+ GQ LV+I+GG Sbjct: 14 IRKIFLRVGVLPFFLLGALVVFTLLSPKFLTGQNLVNVMRQSVYLVLVSLGQMLVLISGG 73 Query: 76 FDLSVGAVVALASVVXKKKKI------PGNNALIIASGMAAGLGSGAVVGLVNGFCVAKL 129 FDLSVG +AL SVV + P L+I G AG + A VGL+NG VA Sbjct: 74 FDLSVGTAIALTSVVSATVMVWLAGIFPDAIFLVILLGALAGFAAAACVGLLNGIGVAYF 133 Query: 130 KVSGFVVTLGTMSATAGVGLMITNGIPVYGMPDIFVKGFGRAQALGLPTAVHVALVIIIV 189 VS F++TLG S G L++T G+PV G+P F FG + G+P V VAL+ I+ Sbjct: 134 DVSPFIMTLGASSLAGGAALLLTGGVPVSGLPFAFADVFGFGRLWGVPVPVIVALLCIVA 193 Query: 190 MVFAQRRTLFGRYVYAIGGNVDAAIVSGVSIQRHVVGTYVVSSMLAALTGILLTAQVGSG 249 M RT G VYA+GGN+ AA +S ++ +R ++ YV +++A+LTG+LLTA+V SG Sbjct: 194 MWVFMSRTSLGTQVYAVGGNIKAAHLSAINTKRTLMMAYVGCALIASLTGLLLTARVESG 253 Query: 250 QASFGGDRMMLQSIAAAVIGGVSLRGGVGRIEIVAISALFLTILGNALNLLHVDSRLQPV 309 +A+ GG + L+SIAA VI GVSLRGG+GR+E V + F+ ++ N +NL + S +Q V Sbjct: 254 EANLGGT-ITLESIAACVIAGVSLRGGIGRVENVVLGGFFIVLVQNGMNLAQISSYMQMV 312 Query: 310 FLGVIMVAAVALDELSRR 327 LG +++ AV D+L R Sbjct: 313 LLGALLILAVIFDQLRYR 330