BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0049.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003693491.1| inner-membrane translocator [Starkeya novell... 384 e-104 ref|YP_003552098.1| inner-membrane translocator [Candidatus Puni... 181 1e-43 ref|ZP_01076895.1| Ribose/xylose/arabinose/galactoside ABC-type ... 178 1e-42 ref|YP_001238515.1| ABC transporter permease [Bradyrhizobium sp.... 177 2e-42 ref|YP_003450314.1| methyl-galactoside transport system permease... 175 7e-42 >ref|YP_003693491.1| inner-membrane translocator [Starkeya novella DSM 506] gb|ADH88872.1| inner-membrane translocator [Starkeya novella DSM 506] Length = 338 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/307 (76%), Positives = 251/307 (81%), Gaps = 25/307 (8%) Query: 30 PVALVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVSM 89 P+ALV LLLGFAAVD VL+P NL+NI QQASYLALFAMAQTVVILTRGFDLALGPTVSM Sbjct: 31 PIALVVLLLGFAAVDSAVLTPGNLVNIVQQASYLALFAMAQTVVILTRGFDLALGPTVSM 90 Query: 90 VSVGTALAMAGATASGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGVNPFVATLGSY 149 VSVG ALAMA A G G+VLL GLAAGF LG ACG+FNGVVIA LGV+PFVATLGSY Sbjct: 91 VSVGAALAMAAGVAGGQEPGTVLLMGLAAGFALGAACGVFNGVVIAYLGVSPFVATLGSY 150 Query: 150 NIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVGAVLHWTLTRTVFGR 209 NIAIGVATT+SSGRPVQGVP FS + YGGS FG+PAAI ITV VG LH LTRTV+GR Sbjct: 151 NIAIGVATTISSGRPVQGVPDLFSWLLYGGSPFGVPAAIVITVIVGIALHLVLTRTVYGR 210 Query: 210 SLYLIGTN-------------------------XALGAIMMTARTGSGEPNLGGALSLQA 244 +LY+IGTN ALGA+MMTARTGSGEPNLGG+LSLQA Sbjct: 211 ALYIIGTNPRAAAVAGLPVKRLLVATYVLCSSLAALGALMMTARTGSGEPNLGGSLSLQA 270 Query: 245 IAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVGVLLD 304 IA AVVGGTSLAGGRGGVGTAV+GALF+TILSNGMNLTRIDGYVQMVVLGAIVI GV+LD Sbjct: 271 IAAAVVGGTSLAGGRGGVGTAVVGALFVTILSNGMNLTRIDGYVQMVVLGAIVIAGVVLD 330 Query: 305 RLRLERR 311 RLRLERR Sbjct: 331 RLRLERR 337 >ref|YP_003552098.1| inner-membrane translocator [Candidatus Puniceispirillum marinum IMCC1322] gb|ADE40014.1| inner-membrane translocator [Candidatus Puniceispirillum marinum IMCC1322] Length = 342 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 174/309 (56%), Gaps = 30/309 (9%) Query: 29 LPVALVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVS 88 LP L+ ++ F + L+ NL+N+ +Q+ YL + +M Q + +LT GFDL++G ++ Sbjct: 29 LPFLLMVAVIVFTLMSDNFLTGKNLMNVLRQSVYLTIVSMGQMLALLTGGFDLSVGTVLA 88 Query: 89 MVSVGTALAMAGATASGHGTGSVLLA---GLAAGFLLGIACGLFNGVVIALLGVNPFVAT 145 + SV AL M T +V LA G AG L G G+ NG+ +A GV+PF+ + Sbjct: 89 LTSVIGALTMT--TIYMASPDAVFLAITLGCLAGILAGTLIGVINGIGVAFFGVSPFMMS 146 Query: 146 LGSYNIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVGAVLHWTLTRT 205 LG ++ G+A L+ G PV G+P F I G GIP + +T+ + +L+ L RT Sbjct: 147 LGMASVGFGIALYLTGGVPVYGMPQAFGDIIGFGVFLGIPTPVYVTILIAILLYIFLYRT 206 Query: 206 VFGRSLYLIGTNX-------------------------ALGAIMMTARTGSGEPNLGGAL 240 FGR LY +G N AL +++TAR +GE N+G ++ Sbjct: 207 TFGRYLYAVGGNLKAARLSGISTRAVLFTTYTLCAALAALSGMLLTARLDTGEANIGASM 266 Query: 241 SLQAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVG 300 LQ+IA V+ G SL GG G + + +LGALFI ++ NGMNL RI+ Y+Q VVLGA++I+ Sbjct: 267 PLQSIAACVIAGVSLRGGVGRLESVILGALFIGLVQNGMNLARIESYLQTVVLGALLILA 326 Query: 301 VLLDRLRLE 309 V+ D+LRL Sbjct: 327 VIADQLRLR 335 >ref|ZP_01076895.1| Ribose/xylose/arabinose/galactoside ABC-type transport systems,permease component [Marinomonas sp. MED121] gb|EAQ65114.1| Ribose/xylose/arabinose/galactoside ABC-type transport systems,permease component [Marinomonas sp. MED121] Length = 344 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 30/309 (9%) Query: 29 LPVALVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLALGPTVS 88 LP L+A ++ F+ + L+ N++N+ +Q+SYL L AM Q +LT GFDL++G V+ Sbjct: 31 LPFLLLAAIIIFSLLSENFLTGRNVMNVFRQSSYLMLIAMGQMFALLTGGFDLSVGTIVA 90 Query: 89 MVSVGTALAMAGATASGHGTGSVLLA---GLAAGFLLGIACGLFNGVVIALLGVNPFVAT 145 + SV +A+ M+ T ++ L+ G G +G + GL NG+ +A+ VNPF+ T Sbjct: 91 ITSVVSAIVMS--TLFSLYPDAIWLSISVGALVGLFVGTSIGLINGIGVAIFKVNPFMMT 148 Query: 146 LGSYNIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVGAVLHWTLTRT 205 LG ++ G A L+ G PV G+P FS F G + GIPA I I A L + T Sbjct: 149 LGMSSVGFGAALYLTGGSPVYGMPMDFSDTFGFGKLLGIPAPIWICFLCFAALALLVNWT 208 Query: 206 VFGRSLYLIGTN-------------------------XALGAIMMTARTGSGEPNLGGAL 240 GR Y +G N A+ I++TAR +GE N+G + Sbjct: 209 RTGRYFYAVGGNLKAAQLSGINTKKMLMLAYMISGLVAAVCGILLTARLDTGEANIGASF 268 Query: 241 SLQAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGAIVIVG 300 L++IA V+ G SL GG G +G VLGALFI +++NGMNL RI+ Y+Q VV+G ++I Sbjct: 269 PLESIAACVIAGVSLRGGVGRIGNVVLGALFIGLITNGMNLARIESYLQTVVIGLLLIFA 328 Query: 301 VLLDRLRLE 309 V+ D+LRL+ Sbjct: 329 VIADQLRLK 337 >ref|YP_001238515.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ34609.1| monosaccharide ABC transporter membrane protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 348 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 27/312 (8%) Query: 23 WLWSAALPVALVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILTRGFDLA 82 +L LP L A L+ F+ V + L+ NL N+A+Q+ YL L ++ Q + ++T GFDL+ Sbjct: 29 FLRVGVLPFFLFATLIAFSLVSKEFLALQNLTNVARQSVYLILVSLGQMLALVTGGFDLS 88 Query: 83 LGPTVSMVSVGTALAMAGATA--SGHGTGSVLLAGLAAGFLLGIACGLFNGVVIALLGVN 140 +G +++ SV +ALAM + S V++ G AG + G NG+ +A+ GV+ Sbjct: 89 VGTAIALTSVVSALAMVTLSHMLSPDMLWLVIVLGCCAGLAAALVIGSINGLGVAVFGVS 148 Query: 141 PFVATLGSYNIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVGAVLHW 200 PF+ TLG ++ G+A L+ G PV GVP F I G VF IP + + + A + Sbjct: 149 PFIMTLGVQSVGAGIALFLTGGVPVSGVPYEFGDILGFGRVFDIPVPVLVAIVAAATIWL 208 Query: 201 TLTRTVFGRSLYLIGTNX-------------------------ALGAIMMTARTGSGEPN 235 + RT G+ + +G N ++ +++TAR GSGE N Sbjct: 209 VMNRTRLGKHIQAVGGNAKAARLSGVNTTKVLFIAYALCALLASVAGLLLTARVGSGETN 268 Query: 236 LGGALSLQAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQMVVLGA 295 LGG ++L++IA V+ G SL GG G V VLG FI +L NGMN+ +I Y+QMV+LG+ Sbjct: 269 LGGTIALESIAACVIAGVSLHGGIGRVENVVLGGFFIVLLQNGMNIAQIGSYMQMVLLGS 328 Query: 296 IVIVGVLLDRLR 307 ++++ V+LD+ R Sbjct: 329 LLVLAVILDQFR 340 >ref|YP_003450314.1| methyl-galactoside transport system permease protein [Azospirillum sp. B510] dbj|BAI73770.1| methyl-galactoside transport system permease protein [Azospirillum sp. B510] Length = 350 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 126/317 (39%), Positives = 180/317 (56%), Gaps = 28/317 (8%) Query: 19 APGR--WLWSAALPVALVALLLGFAAVDRGVLSPANLLNIAQQASYLALFAMAQTVVILT 76 A GR +L LP L L FA L+ NL+N+A+Q+ YL L ++ Q +V++T Sbjct: 25 AAGRALFLRLGVLPFFLAVALAVFALTSDRFLTTDNLVNVARQSVYLVLVSLGQMMVLIT 84 Query: 77 RGFDLALGPTVSMVSVGTALAMAGATASGHGTGSVLLA-GLAAGFLLGIACGLFNGVVIA 135 GFDLA+G TV++ SV +AL MA A+ +++A G AGF++ GL NG +A Sbjct: 85 GGFDLAVGATVALTSVVSALVMAALGAAFPDAPVLVIAFGALAGFVVAALVGLANGAGVA 144 Query: 136 LLGVNPFVATLGSYNIAIGVATTLSSGRPVQGVPAPFSQIFYGGSVFGIPAAIAITVGVG 195 L GV+PF+ TLG ++A G + L+ G PV G+PA F+ +F G GIP + + Sbjct: 145 LFGVSPFIMTLGVSSVAAGGSLFLTGGVPVSGLPAEFADLFGFGRWLGIPVPVLVAAVAI 204 Query: 196 AVLHWTLTRTVFGRSLYLIGTN-------------------------XALGAIMMTARTG 230 A+ +TRT G LY +G N AL +++TAR Sbjct: 205 AIAWVVMTRTRTGAHLYAVGGNIKAARLSAIDTGRTLIVAYVLCALIAALTGLLLTARVE 264 Query: 231 SGEPNLGGALSLQAIAGAVVGGTSLAGGRGGVGTAVLGALFITILSNGMNLTRIDGYVQM 290 SGE NLGG L+L++IA V+ G SL GG G V T VLGA FI ++ NGMNL +I Y+QM Sbjct: 265 SGEANLGGTLALESIAACVIAGVSLRGGIGRVETVVLGAFFIVLVQNGMNLAQIGSYLQM 324 Query: 291 VVLGAIVIVGVLLDRLR 307 V+LG ++I+ V+ D++R Sbjct: 325 VLLGGLLILAVIFDQIR 341