BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0042.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08631068.1| transcriptional regulator, IclR family [Brady... 442 e-122 ref|NP_769800.1| transcriptional regulator [Bradyrhizobium japon... 416 e-114 ref|YP_001206871.1| glyoxylate bypass operon transcriptional rep... 408 e-112 ref|YP_002942044.1| IclR family transcriptional regulator [Vario... 242 4e-62 ref|ZP_01902709.1| transcriptional regulatory protein [Roseobact... 239 4e-61 >ref|ZP_08631068.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06169.1| transcriptional regulator, IclR family [Bradyrhizobiaceae bacterium SG-6C] Length = 283 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/275 (77%), Positives = 241/275 (87%) Query: 1 MKRESIRRKPSDPDLRAQPEQDVRDGGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLS 60 MK+ IRRK +P + E D +DG VQSV+RA+ ++ETLAEDDEGYRLTDLA+R GLS Sbjct: 1 MKKSMIRRKTPEPRSHTEAEADAKDGSVQSVNRALTLIETLAEDDEGYRLTDLAVRAGLS 60 Query: 61 PSTVHRLLTTLENRRFVQFDREESKWHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQT 120 STVHRLLTTLE RRFVQFDR ESKWHIGA++F VGSTF RRRNF A A+PYLRKLRDQT Sbjct: 61 TSTVHRLLTTLEKRRFVQFDRSESKWHIGARAFSVGSTFARRRNFVAHAMPYLRKLRDQT 120 Query: 121 RETANLAVVDDESIIVVSRIESREIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAII 180 RETANLAVVDDE+IIV++R+ESREIMRSLTKVGGRVAM+ASGVGKAVLATYSD DVNAII Sbjct: 121 RETANLAVVDDETIIVLTRMESREIMRSLTKVGGRVAMVASGVGKAVLATYSDEDVNAII 180 Query: 181 RRQGMPRLTEKSIVRPGELFKELEIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAI 240 RQGMPRLTEKSIVRPGELF+ LEIVR++GYAVDDEEAR+GLRC+AAVV+NDC+EP AAI Sbjct: 181 HRQGMPRLTEKSIVRPGELFRALEIVRQRGYAVDDEEARMGLRCIAAVVYNDCSEPLAAI 240 Query: 241 SVSGMADRLTNERLPEIGTIVHRIAAELTAELRGN 275 SVSGM R+T+ER+P IGTIV +AAELT L G Sbjct: 241 SVSGMTSRVTDERVPIIGTIVRDVAAELTVALGGT 275 >ref|NP_769800.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48425.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/274 (72%), Positives = 231/274 (84%) Query: 1 MKRESIRRKPSDPDLRAQPEQDVRDGGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLS 60 M + IRRK +P ++ + D RDGGVQSVDRA+ ILETLAEDDEGYRL+DLA+RTGLS Sbjct: 8 MSKNVIRRKSLEPRSPSEADHDARDGGVQSVDRALSILETLAEDDEGYRLSDLAVRTGLS 67 Query: 61 PSTVHRLLTTLENRRFVQFDREESKWHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQT 120 STVHRLL TLE+RRFVQFDR ESKWH+G + F VG++F RRRNF+ QA+PYLRKLRD T Sbjct: 68 ASTVHRLLATLESRRFVQFDRAESKWHVGVRGFTVGASFARRRNFSTQAIPYLRKLRDLT 127 Query: 121 RETANLAVVDDESIIVVSRIESREIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAII 180 RETANLAVVDDE IIV++R+ESREIMRSLT+VGGRVAM+ SGVGKAVLATYSD DV A+I Sbjct: 128 RETANLAVVDDEFIIVLTRMESREIMRSLTQVGGRVAMVTSGVGKAVLATYSDEDVGAVI 187 Query: 181 RRQGMPRLTEKSIVRPGELFKELEIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAI 240 R GMPRLTEKSIVRP +LFKEL +R+QG+A+DDEEA GLRC+AAVV+NDC EP AAI Sbjct: 188 RHHGMPRLTEKSIVRPSDLFKELATIRKQGFAIDDEEACTGLRCIAAVVYNDCAEPLAAI 247 Query: 241 SVSGMADRLTNERLPEIGTIVHRIAAELTAELRG 274 SVSGM RLT++RLPEIG IV +A ELT L G Sbjct: 248 SVSGMTSRLTDDRLPEIGRIVRDVAGELTVALGG 281 >ref|YP_001206871.1| glyoxylate bypass operon transcriptional repressor [Bradyrhizobium sp. ORS 278] emb|CAL78654.1| putative transcriptional repressor for glyoxylate bypass operon, IclR family [Bradyrhizobium sp. ORS 278] Length = 281 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/267 (75%), Positives = 229/267 (85%), Gaps = 2/267 (0%) Query: 6 IRRKPSDPDLRAQPEQDVRDGGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVH 65 IRRK +P RA + RDGGVQSV RA+QILE LAEDDEGYRL+DLAIR GLS STVH Sbjct: 2 IRRKTIEP--RADAAAEPRDGGVQSVGRALQILEILAEDDEGYRLSDLAIRAGLSTSTVH 59 Query: 66 RLLTTLENRRFVQFDREESKWHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETAN 125 RLLTTLE RRFVQFDR ESKWH+GAQSF VG+ F RRRNF A A+PYLR+LRDQ+RETAN Sbjct: 60 RLLTTLEKRRFVQFDRMESKWHVGAQSFAVGAIFTRRRNFVALAIPYLRRLRDQSRETAN 119 Query: 126 LAVVDDESIIVVSRIESREIMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGM 185 LAVVDDES++V+ R+ESREIMRSLTKVGGR++M+ASG+GKAVLATYSD DVN II RQGM Sbjct: 120 LAVVDDESLMVLLRLESREIMRSLTKVGGRLSMVASGMGKAVLATYSDDDVNGIIHRQGM 179 Query: 186 PRLTEKSIVRPGELFKELEIVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGM 245 PRLTEKSI+R +LF+ELE +RRQGYAVDDEEARLGLRC+AAVV + C EP AAISVSG+ Sbjct: 180 PRLTEKSIIRASDLFRELETIRRQGYAVDDEEARLGLRCIAAVVHDSCREPLAAISVSGL 239 Query: 246 ADRLTNERLPEIGTIVHRIAAELTAEL 272 A RLT ER+P +G +V IAAELTA L Sbjct: 240 ASRLTEERVPMVGGMVRDIAAELTAAL 266 >ref|YP_002942044.1| IclR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS16778.1| transcriptional regulator, IclR family [Variovorax paradoxus S110] Length = 279 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 168/250 (67%) Query: 25 DGGVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREES 84 DG VQS+ RAMQ+LE LA+DDEGYRL D+A R+GLS ST HRLLTTLE R+FVQFDRE S Sbjct: 27 DGTVQSLTRAMQLLELLADDDEGYRLVDIAARSGLSSSTAHRLLTTLEQRQFVQFDRETS 86 Query: 85 KWHIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVDDESIIVVSRIESRE 144 W++G + F VG+ F RRR A ALP +R+LRD + E+ NL + D I+ V+++ESRE Sbjct: 87 LWYVGVRCFSVGAAFGRRRRIAHLALPVMRRLRDSSGESINLGIADLGDIVFVTQVESRE 146 Query: 145 IMRSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKELE 204 +MR++ K G R + + +G+A+LA ++ DV +R G+P+LT +I R L + L Sbjct: 147 LMRAIGKPGFRAPLHGTAMGQAILAAMAEDDVLQYLRTYGLPKLTPNTIARASRLHETLG 206 Query: 205 IVRRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHRI 264 VRR GYAVDDE+ +GLRC+AA + ++ +P+ AIS+ G R+ ++G V Sbjct: 207 EVRRAGYAVDDEQNAVGLRCIAAAIRDEHGQPFGAISLVGPTQRIKAADFAQLGATVRGA 266 Query: 265 AAELTAELRG 274 A E+TA G Sbjct: 267 ADEITAAYGG 276 >ref|ZP_01902709.1| transcriptional regulatory protein [Roseobacter sp. AzwK-3b] gb|EDM71530.1| transcriptional regulatory protein [Roseobacter sp. AzwK-3b] Length = 268 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 130/256 (50%), Positives = 177/256 (69%) Query: 27 GVQSVDRAMQILETLAEDDEGYRLTDLAIRTGLSPSTVHRLLTTLENRRFVQFDREESKW 86 GVQSV RA+ +L L+ DEG R++D A GL+ ST HRLLTTLE + F QF+ E + W Sbjct: 8 GVQSVVRALNLLRILSRHDEGLRVSDAAREAGLAVSTAHRLLTTLELQGFAQFEPENALW 67 Query: 87 HIGAQSFVVGSTFVRRRNFAAQALPYLRKLRDQTRETANLAVVDDESIIVVSRIESREIM 146 H+G ++F G+ F RR NF A ALPYLR+LRD TRETANL ++D++ ++ VS++ESREIM Sbjct: 68 HVGREAFAAGAAFGRRHNFVAPALPYLRRLRDATRETANLGLLDNDELVTVSQVESREIM 127 Query: 147 RSLTKVGGRVAMIASGVGKAVLATYSDADVNAIIRRQGMPRLTEKSIVRPGELFKELEIV 206 R+++ GGRV + SG+GKA+LAT++D D+ A + R G LT +S +++ + Sbjct: 128 RAISPPGGRVPVFCSGMGKAILATWTDEDIKAFVARTGFHPLTARSHRNLKTALQDIADI 187 Query: 207 RRQGYAVDDEEARLGLRCVAAVVFNDCNEPYAAISVSGMADRLTNERLPEIGTIVHRIAA 266 RR+GYA+DDEE GLRC+AAVV++ E AISVSG+A RL +++L IG IV R AA Sbjct: 188 RRRGYALDDEEHVTGLRCLAAVVWSPQGEAACAISVSGLAARLQDDKLDRIGQIVARAAA 247 Query: 267 ELTAELRGNRTQQAQA 282 ELT L G + QA Sbjct: 248 ELTENLGGVPPESHQA 263