BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0035.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767502.1| hypothetical protein bsr0862 [Bradyrhizobium ja...   116   1e-24
ref|YP_571901.1| hypothetical protein Nham_4487 [Nitrobacter ham...    38   0.62 
ref|NP_774903.1| hypothetical protein bsr8263 [Bradyrhizobium ja...    37   1.1  

>ref|NP_767502.1| hypothetical protein bsr0862 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46127.1| bsr0862 [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 65/69 (94%)

Query: 1  MKYSAELIQTMRDALDAVMASVPADQSVFGLKAAVAECILRAAAHGQTSFDGLVTSASDQ 60
          M+YS+ELI+TMR AL+ VMASVPA QSVFGLKAAVAECIL+AAAHGQTS+DGLV SASDQ
Sbjct: 1  MQYSSELIRTMRQALETVMASVPAHQSVFGLKAAVAECILKAAAHGQTSYDGLVASASDQ 60

Query: 61 LQSIISMLT 69
          +Q++ISML+
Sbjct: 61 IQTMISMLS 69


>ref|YP_571901.1| hypothetical protein Nham_4487 [Nitrobacter hamburgensis X14]
 gb|ABE65069.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 72

 Score = 37.7 bits (86), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 2  KYSAELIQTMRDALDAVMASVPADQSVFGLKAAVAECILRAAAHGQTSFDGLVTSASDQ 60
          K++ EL+ TMR  L+  +  + A       KA +AE ILR AA G T     +T A ++
Sbjct: 8  KFAPELVSTMRSVLNVAVDQIDAAHRTPATKAKMAERILRTAAEGVTEAQDFITVAIEE 66


>ref|NP_774903.1| hypothetical protein bsr8263 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53528.1| bsr8263 [Bradyrhizobium japonicum USDA 110]
          Length = 78

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 3  YSAELIQTMRDALDAVMASVPADQSVFGLKAAVAECILRAAAHGQTSFDGLVTSASDQLQ 62
          + AE+   +R  LD V  ++P  ++  G +A VA  +L AAAHGQ S D L  +    L 
Sbjct: 15 FDAEMTALLRAVLDEVCENIPVSET--GARAYVASKLLDAAAHGQLSTDALKAAGRKALN 72