BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0029.p         (229 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02928205.1| Cobyrinic acid a,c-diamide synthase [Verrucom...    40   0.30 
ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglob...    39   0.43 
ref|ZP_04636980.1| Threonine dehydratase catabolic [Yersinia int...    39   0.55 
ref|ZP_01047449.1| hypothetical protein NB311A_06036 [Nitrobacte...    39   0.70 
ref|ZP_04618656.1| Threonine dehydratase catabolic [Yersinia ald...    39   0.73 

>ref|ZP_02928205.1| Cobyrinic acid a,c-diamide synthase [Verrucomicrobium spinosum DSM
           4136]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 43  GLIGLREAVELPQQLYGSGRANALA-------EVDRRWGHNALVIADLSNDASYAEVLQQ 95
           GL GL + V++ QQ+  SG   ALA         D R   +  V++D+ N   +++V+  
Sbjct: 122 GLEGLSKIVQIVQQIRESGANPALALEGIVMTMFDSRMNLSQQVVSDVRN--YFSQVVYD 179

Query: 96  TFGPRVIGLQISRSGDGTVVERRPCGHGAILVYTVGRSFL 135
           T  PR I L  + S   +++E  P G GA    ++   FL
Sbjct: 180 TIIPRTIRLGEAPSFGKSIIEYEPNGRGAQAYLSLAEEFL 219


>ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
 gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
           5631]
          Length = 435

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 44  LIGLREAVELPQQLYGSGRANALAEVDRRWGHNALVIADLSNDASYAEVLQQTFGPRVIG 103
           +I + +  E P +L    R N      R +    + + +L    +YA+VL  + G     
Sbjct: 283 VIVVLDVTEKPYKLVHFERFNR-----RPYAEVIMRLKELYRRFNYAKVLIDSTG----- 332

Query: 104 LQISRSGDGTVVERRPCGHGAILVYTVGRSFLIEQFHGFMQANQVRFAAAPELVKAFEQL 163
                 GD  + + +  G    +     +  LI++    ++  ++R+    ELVK   +L
Sbjct: 333 -----VGDPVLEDLQDVGAEGYVFTPKSKVQLIQRLQAALENGEIRYPYIEELVK---EL 384

Query: 164 SELDVEHRQSGTVYTCRAGKHDDLGISCAMLAWAARHRHLSTWFQIAAA 212
              + +  ++G     R G HDD  I+ A+  WAA     + +  +  A
Sbjct: 385 QFFEYQLTRTGIKMEARQGFHDDYVIALALAVWAAEQHSGTGYISLGVA 433


>ref|ZP_04636980.1| Threonine dehydratase catabolic [Yersinia intermedia ATCC 29909]
 gb|EEQ18851.1| Threonine dehydratase catabolic [Yersinia intermedia ATCC 29909]
          Length = 330

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 116 ERRPCGHGAILVYTVG---RSFLIEQFHG--FMQANQVRFAAAPELVKAFEQLSELDVEH 170
           ++R  GH    +Y  G    ++L E+ HG  F++   ++   + ++  AF +LS L  E 
Sbjct: 18  QKRLRGH----IYKTGLARSNYLSERCHGEIFLKFENMQRTGSFKIRGAFNKLSSLSEEE 73

Query: 171 RQSGTVYTCRAGKH-DDLGISCAMLAWAAR 199
           R+ G V  C AG H   + +SCAML   ++
Sbjct: 74  RRQGVV-ACSAGNHAQGVSLSCAMLGINSK 102


>ref|ZP_01047449.1| hypothetical protein NB311A_06036 [Nitrobacter sp. Nb-311A]
 gb|EAQ34554.1| hypothetical protein NB311A_06036 [Nitrobacter sp. Nb-311A]
          Length = 219

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 130 VGRSFLIEQFHGFMQANQVRFAAAPELVKAF-EQLSELDVEHRQSG-TVYTCRAGKHDDL 187
           V +S LI      +   ++RFAAA     A  E+L +   +   +G + +  R G HDDL
Sbjct: 133 VPKSILISTLDARLHLGELRFAAALSEAGAMAEELKDFRRKVTAAGRSTWEARVGSHDDL 192

Query: 188 GISCAMLAWA 197
            +SCA+  W+
Sbjct: 193 VLSCALALWS 202


>ref|ZP_04618656.1| Threonine dehydratase catabolic [Yersinia aldovae ATCC 35236]
 gb|EEP96765.1| Threonine dehydratase catabolic [Yersinia aldovae ATCC 35236]
          Length = 330

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 116 ERRPCGHGAILVYTVG---RSFLIEQFHG--FMQANQVRFAAAPELVKAFEQLSELDVEH 170
           ++R  GH    +Y  G    ++L E+ HG  +++   ++   + ++  AF +LS L  E 
Sbjct: 18  QKRLKGH----IYKTGLARSNYLSERCHGEIYLKFENMQRTGSFKIRGAFNKLSSLSEEE 73

Query: 171 RQSGTVYTCRAGKH-DDLGISCAMLAWAAR 199
           R+ G V  C AG H   + +SCAML   ++
Sbjct: 74  RKQGVV-ACSAGNHAQGVSLSCAMLGINSK 102